Mateusz  Kurciński photo

Mateusz Kurciński

Postdoc

Contact

Emailmkurc@chem.uw.edu.pl
Phone(+48) 22 55 26 364Dial the number
AddressRoom 3.132
Biological and Chemical Research Centre
University of Warsaw
Zwirki i Wigury 101
02-089 Warsaw, Poland
rooms 3.132, 3.133

Publications

  1. Protein Structure Prediction Using Coarse-Grained ModelsComputational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes: 27-59, 2019Błaszczyk Maciej, Gront Dominik, Kmiecik Sebastian, Kurciński Mateusz, Kolinski Michal, Ciemny Maciej, Ziolkowska Katarzyna, Panek Marta, Kolinski Andrzej
  2. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structuresNucleic Acids Res, 46: W338-W343, 2018Kuriata Aleksander, Gierut A. M., Oleniecki T., Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
  3. CABS-flex standalone: a simulation environment for fast modeling of protein flexibilityBioinformatics, 4: 694–695, 2018Kurciński Mateusz, Oleniecki T., Ciemny Maciej, Kuriata Aleksander, Kolinski A., Kmiecik Sebastian
  4. Protein-peptide docking using CABS-dock and contact informationBriefings in Bioinformatics, 2018Błaszczyk Maciej, Ciemny Maciej, Kolinski A., Kurciński Mateusz, Kmiecik Sebastian
  5. Protein-peptide docking: opportunities and challengesDrug Discovery Today, 23: 1530-1537, 2018Ciemny Maciej, Kurciński Mateusz, Kamel Karol, Kolinski Andrzej, Alam Nawsad, Schueler-Furman Ora, Kmiecik Sebastian
  6. A protocol for CABS-dock protein-peptide docking driven by side-chain contact informationBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej
  7. Highly Flexible Protein-Peptide Docking Using CABS-DockMethods in Molecular Biology, 1561: 69-94, 2017Ciemny Maciej, Kurciński Mateusz, Konrad Kozak, Andrzej Kolinski, Kmiecik Sebastian
  8. Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motifBiomedical Engineering Online, 16, 2017Kurciński Mateusz, Błaszczyk Maciej, Kolinski Andrzej, Kmiecik Sebastian, Ciemny Maciej
  9. Flexible protein-peptide docking using CABS-dock with knowledge about the binding siteProceedings Of The International Work-conference On Bioinformatics And Biomedical Engineering (iwwbio) In Granada, Spain, 195-201, Arxiv:1605.09269, 2016Kurciński Mateusz, Ciemny Maciej, Błaszczyk Maciej, Andrzej Koliński, Kmiecik Sebastian
  10. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible dockingMethods, 93: 72-83, 2016Błaszczyk Maciej, Kurciński Mateusz, Kouza Maksim, Wieteska Lukasz, Debinski Aleksander, Kolinski Andrzej, Kmiecik Sebastian
  11. Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interactionScientific Reports, 6, 2016Ciemny Maciej, Aleksander Debinski, Marta Paczkowska, Andrzej Kolinski, Kurciński Mateusz, Kmiecik Sebastian
  12. Towards protein-protein docking with significant structural changes using CABS-dockProceedings Of The International Work-conference On Bioinformatics And Biomedical Engineering (iwwbio) In Granada, Spain, 207-213, Arxiv:1605.09266, 2016Ciemny Maciej, Kurciński Mateusz, Andrzej Koliński, Kmiecik Sebastian
  13. CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding siteNucleic Acids Research, 43: W419-W424, 2015Kurciński Mateusz, Michal Jamroz, Błaszczyk Maciej, Andrzej Koliński, Kmiecik Sebastian
  14. Coarse-grained modeling of protein structure, dynamics and protein-protein interactionsTask Quarterly, 18: 219–229, 2014Kolinski Andrzej, Kmiecik Sebastian, Jamroz Michal, Błaszczyk Maciej, Kouza Maksim, Kurciński Mateusz
  15. Mechanism of Folding and Binding of an Intrinsically Disordered Protein As Revealed by ab Initio SimulationsJournal Of Chemical Theory And Computation, 10: 2224-2231, 2014Kurciński Mateusz, Kolinski Andrzej, Kmiecik Sebastian

  16. ...And 2 more - see all publications of this author