Project name: 118dc1eccdc366

Status: done

Started: 2026-11-12 11:50:56
Settings
Chain sequence(s) MPAESGKRFKPSKYVPVSAAAIFLVGATTLFFAFTCPGLSLDVSPAVPIYNAIMFLFVLANFSMATFMDPGIFPRAEEDEDKEDDFRAPLYKTVEIKGIQVRMKWCATCRFYRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYRYFFLFLLSLTAHIMGVFGFGLLYVLCHIEELSGVRTAVTMAVMCVAGLFFIPVAGLTGFHVVLVARGRTTNEQVTGKFRGGVNPFTNGCCNNVSRVLCSSPAPRYLGRPKKEKTIVIRPPFLRPEVSDGQITVKIMDNGIQGELRRTKSKGSLEITESQSADAEPPPPPKPDLSRYTGLRTHLSLATNEDSSLLGKDSPPTPTMYKYRPGYSSSSTSAAMPHSSSAKLSRGDSLKEPTSIADSSRHPSYRSEPSLEPESFRSPTFGKSFHFDPLSSGSRSSSLKSAQGTGFELGQLQSIRSEGTTSTSYKSLANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSARLAQQREAERHPRLLPTGPPHREPSPVRYDNLSRHIVASLQEREKLLRQSPPLAGREEEPGLGDSGIQSTPGSGHAPRTSSSSDDSKRSPLSKTPLGRPAVPRFGKPDGLRGRGLGSPEPGTTAPYLGRSMSYSSQKAPSGVSETEEVALQPLLTPKDEVQLKTTYSKSNGQPKSIGSASPGPGQPPLSSPTRGGVKKVSGVGGTTYEISV input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:12:46)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/118dc1eccdc366/tmp/folded.pdb                 (00:12:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:23:58)
Show buried residues

Minimal score value
-5.1478
Maximal score value
3.869
Average score
-0.5159
Total score value
-368.8442

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6874
2 P A -0.2073
3 A A -0.7762
4 E A -2.2089
5 S A -2.1049
6 G A -2.1826
7 K A -2.8639
8 R A -2.3599
9 F A -0.5388
10 K A -1.6513
11 P A -0.5323
12 S A -0.2679
13 K A -0.4706
14 Y A 0.8121
15 V A 1.6094
16 P A 1.1376
17 V A 1.1236
18 S A 1.3531
19 A A 1.6240
20 A A 0.0000
21 A A 1.5642
22 I A 2.3565
23 F A 1.5533
24 L A 0.0000
25 V A 1.6386
26 G A 1.1630
27 A A 1.0488
28 T A 0.0000
29 T A 0.7684
30 L A 1.0448
31 F A 0.0000
32 F A 0.8288
33 A A 0.6321
34 F A 0.8135
35 T A 0.0000
36 C A 0.0000
37 P A 0.0584
38 G A 0.0789
39 L A 0.0000
40 S A 0.5478
41 L A 0.8435
42 D A -0.5335
43 V A 0.6560
44 S A 0.4819
45 P A 0.5864
46 A A 1.0215
47 V A 0.0000
48 P A 1.6073
49 I A 3.0064
50 Y A 2.6976
51 N A 0.0000
52 A A 2.8020
53 I A 3.8690
54 M A 2.7056
55 F A 2.5761
56 L A 3.0615
57 F A 2.7359
58 V A 0.0000
59 L A 1.6786
60 A A 1.1625
61 N A 0.0000
62 F A 0.0000
63 S A 0.8764
64 M A 0.9091
65 A A 0.0000
66 T A 0.9900
67 F A 2.0143
68 M A 1.1654
69 D A 0.0579
70 P A 0.0000
71 G A 0.0000
72 I A -0.3066
73 F A -0.1413
74 P A -0.7520
75 R A -1.9891
76 A A -2.8989
77 E A -4.2058
78 E A -4.7943
79 D A -4.9279
80 E A -5.1478
81 D A -4.6388
82 K A -4.6719
83 E A -4.2817
84 D A -3.6965
85 D A -3.2272
86 F A -0.7168
87 R A -1.7738
88 A A -1.1412
89 P A -0.2055
90 L A 0.9408
91 Y A 0.0914
92 K A -1.0654
93 T A -1.5252
94 V A -1.2383
95 E A -2.4569
96 I A -1.3886
97 K A -2.1314
98 G A -1.6074
99 I A -1.0324
100 Q A -2.1620
101 V A -1.6177
102 R A -1.9455
103 M A -0.9921
104 K A -0.6451
105 W A 0.0022
106 C A 0.0000
107 A A -0.3348
108 T A -0.6973
109 C A 0.0000
110 R A -2.1190
111 F A -0.9034
112 Y A -0.1993
113 R A -0.7419
114 P A -0.5528
115 P A -0.6788
116 R A -0.7923
117 C A 0.0000
118 S A -0.4897
119 H A -0.3462
120 C A 0.0000
121 S A -0.0326
122 V A 0.6927
123 C A 0.1995
124 D A -0.5889
125 N A -0.6048
126 C A 0.0000
127 V A 0.0000
128 E A -0.6899
129 E A -0.8196
130 F A -0.4039
131 D A 0.0000
132 H A -0.2883
133 H A -0.0943
134 C A -0.0521
135 P A 0.1253
136 W A 0.4943
137 V A 0.0000
138 N A 0.2600
139 N A 0.2401
140 C A 0.0000
141 I A 0.0000
142 G A 0.0000
143 R A -1.4046
144 R A -1.2124
145 N A 0.0000
146 Y A -0.2606
147 R A -0.3049
148 Y A 0.2745
149 F A 0.0000
150 F A 0.0000
151 L A 0.6811
152 F A 0.0000
153 L A 0.0000
154 L A 0.7861
155 S A 0.0000
156 L A 0.0000
157 T A 0.7124
158 A A 0.5399
159 H A 0.0000
160 I A 0.0000
161 M A 0.9625
162 G A 0.7584
163 V A 0.0000
164 F A 1.3918
165 G A 0.7645
166 F A 1.1256
167 G A 0.0000
168 L A 1.7207
169 L A 1.8087
170 Y A 0.0000
171 V A 0.0000
172 L A 2.4233
173 C A 1.3552
174 H A 0.3783
175 I A 0.9586
176 E A -1.5086
177 E A -1.6057
178 L A 0.0850
179 S A -0.2334
180 G A -0.0574
181 V A 1.3021
182 R A 0.0977
183 T A 0.0000
184 A A 0.5813
185 V A 0.9213
186 T A 0.0000
187 M A 1.1972
188 A A 0.7782
189 V A 0.0000
190 M A 1.5115
191 C A 1.7906
192 V A 1.8434
193 A A 0.0000
194 G A 1.9766
195 L A 2.6230
196 F A 2.0325
197 F A 2.2492
198 I A 2.4860
199 P A 1.1447
200 V A 0.0000
201 A A 0.9084
202 G A 0.7174
203 L A 1.1886
204 T A 0.0000
205 G A 0.8962
206 F A 1.6916
207 H A 0.0000
208 V A 1.8483
209 V A 2.0551
210 L A 0.0000
211 V A 0.0000
212 A A 0.1377
213 R A -1.3498
214 G A -0.9476
215 R A -1.1248
216 T A 0.0000
217 T A 0.1393
218 N A -0.1104
219 E A 0.0000
220 Q A -0.6812
221 V A 1.0012
222 T A -0.0328
223 G A -0.9454
224 K A -1.5196
225 F A -1.2929
226 R A -2.0994
227 G A -1.3635
228 G A -0.3639
229 V A 1.2409
230 N A 0.0000
231 P A 0.0000
232 F A -0.3990
233 T A -0.9600
234 N A -1.6900
235 G A -0.9308
236 C A 0.1092
237 C A 0.1650
238 N A -0.9046
239 N A 0.0000
240 V A 0.4204
241 S A 0.1808
242 R A -0.5195
243 V A 0.1206
244 L A 0.6396
245 C A 0.5421
246 S A -0.0338
247 S A -0.2987
248 P A -0.8290
249 A A -0.9570
250 P A -1.2558
251 R A -1.8197
252 Y A -0.7326
253 L A -0.9178
254 G A -1.6825
255 R A -3.0009
256 P A -2.7544
257 K A -3.9424
258 K A -4.2422
259 E A -3.7656
260 K A -2.4745
261 T A 0.0962
262 I A 2.4015
263 V A 2.9134
264 I A 2.4956
265 R A 0.3239
266 P A 0.4310
267 P A 0.5493
268 F A 1.6890
269 L A 0.7635
270 R A -1.1596
271 P A -1.3108
272 E A -2.3547
273 V A -1.5048
274 S A -1.7487
275 D A -2.1666
276 G A -1.5134
277 Q A -1.4089
278 I A -0.1067
279 T A 0.3899
280 V A 0.9886
281 K A -0.3755
282 I A 1.4503
283 M A 0.9567
284 D A -1.3295
285 N A -1.3846
286 G A -0.3889
287 I A 0.9039
288 Q A -0.9471
289 G A -1.1599
290 E A -1.9818
291 L A -0.8712
292 R A -2.4385
293 R A -2.7807
294 T A -2.2027
295 K A -2.6202
296 S A -2.1031
297 K A -2.3237
298 G A -1.3023
299 S A -0.4408
300 L A 0.7300
301 E A -0.2164
302 I A 1.0170
303 T A -0.2891
304 E A -1.7928
305 S A -1.5299
306 Q A -2.0285
307 S A -1.4177
308 A A -1.3402
309 D A -2.3747
310 A A -1.7828
311 E A -2.4168
312 P A -1.5142
313 P A -1.0433
314 P A -1.1293
315 P A -1.0622
316 P A -1.5798
317 K A -2.2211
318 P A -1.5587
319 D A -1.6292
320 L A 0.2781
321 S A -0.5217
322 R A -1.1436
323 Y A 0.4657
324 T A -0.2924
325 G A -0.4374
326 L A 0.4923
327 R A -0.7491
328 T A -0.3753
329 H A -0.0666
330 L A 1.1452
331 S A 0.4856
332 L A 0.8524
333 A A 0.3208
334 T A -0.7618
335 N A -2.3542
336 E A -3.1928
337 D A -2.9973
338 S A -1.0473
339 S A -0.2361
340 L A 1.6344
341 L A 1.6121
342 G A -0.6440
343 K A -2.3335
344 D A -2.8708
345 S A -1.6692
346 P A -0.9327
347 P A -0.5236
348 T A -0.4194
349 P A -0.0629
350 T A 0.3646
351 M A 1.2978
352 Y A 1.1215
353 K A -0.5929
354 Y A 0.0269
355 R A -1.5214
356 P A -0.6728
357 G A -0.2857
358 Y A 0.6467
359 S A 0.2395
360 S A -0.2355
361 S A -0.4794
362 S A -0.4441
363 T A -0.3082
364 S A -0.2532
365 A A 0.1818
366 A A 0.5020
367 M A 0.7308
368 P A -0.2033
369 H A -1.0233
370 S A -0.9168
371 S A -0.6033
372 S A -0.6958
373 A A -0.6734
374 K A -1.0281
375 L A 0.2593
376 S A -0.6809
377 R A -2.3249
378 G A -2.5119
379 D A -2.3943
380 S A -1.1797
381 L A -0.3111
382 K A -1.9672
383 E A -2.4407
384 P A -1.6990
385 T A -0.2270
386 S A 0.7920
387 I A 1.5430
388 A A 0.0258
389 D A -1.4923
390 S A -1.5651
391 S A -1.8510
392 R A -2.5380
393 H A -2.1210
394 P A -1.0564
395 S A -0.2860
396 Y A 0.2330
397 R A -1.7527
398 S A -1.8752
399 E A -2.4722
400 P A -0.9248
401 S A -0.3729
402 L A 0.2535
403 E A -1.6254
404 P A -1.7232
405 E A -1.8381
406 S A -0.5821
407 F A 0.5030
408 R A -1.1107
409 S A -0.8500
410 P A -0.3776
411 T A 0.5970
412 F A 1.3042
413 G A -0.4148
414 K A -1.2481
415 S A -0.3596
416 F A 1.3933
417 H A 0.4987
418 F A 0.7881
419 D A -0.7867
420 P A -0.0137
421 L A 0.9220
422 S A 0.2802
423 S A -0.2771
424 G A -1.0825
425 S A -1.4078
426 R A -2.1898
427 S A -1.3445
428 S A -0.4809
429 S A 0.0447
430 L A 0.5358
431 K A -1.0811
432 S A -0.9963
433 A A -1.0931
434 Q A -1.4934
435 G A -1.2827
436 T A -0.3832
437 G A -0.0325
438 F A 1.1231
439 E A -0.2957
440 L A 0.5125
441 G A -0.3480
442 Q A -0.5673
443 L A 0.2490
444 Q A -0.4022
445 S A 0.0281
446 I A 0.7367
447 R A -1.4480
448 S A -1.6748
449 E A -2.5868
450 G A -1.4344
451 T A -0.8142
452 T A -0.5117
453 S A -0.1909
454 T A -0.1989
455 S A -0.1495
456 Y A 0.5149
457 K A -0.9092
458 S A -0.1756
459 L A 0.7322
460 A A -0.3568
461 N A -1.7329
462 Q A -2.2486
463 T A -2.2454
464 R A -3.1163
465 N A -2.4530
466 G A -1.4233
467 S A -0.0501
468 L A 1.2713
469 S A 0.6802
470 Y A 1.2621
471 D A -0.1694
472 S A 0.6751
473 L A 2.2964
474 L A 1.8166
475 T A 0.2156
476 P A -0.3335
477 S A -1.1281
478 D A -2.3758
479 S A -1.4679
480 P A -1.3053
481 D A -1.7310
482 F A 0.0528
483 E A -1.0384
484 S A -0.3373
485 V A 0.6905
486 Q A -0.4541
487 A A -0.4591
488 G A -1.1719
489 P A -1.4017
490 E A -2.5885
491 P A -2.2655
492 D A -2.4977
493 P A -0.9963
494 P A -0.0961
495 L A 1.4242
496 G A 0.8047
497 Y A 1.3152
498 T A 0.5012
499 S A 0.6151
500 P A 1.0779
501 F A 2.4595
502 L A 1.9758
503 S A 0.7664
504 A A 0.0049
505 R A -1.2708
506 L A 0.0678
507 A A -0.9546
508 Q A -2.4491
509 Q A -2.9703
510 R A -3.7781
511 E A -3.8339
512 A A -2.8307
513 E A -3.5709
514 R A -3.4612
515 H A -2.8651
516 P A -1.8354
517 R A -1.0825
518 L A 1.2550
519 L A 1.7172
520 P A 0.4287
521 T A -0.1792
522 G A -0.8437
523 P A -1.1371
524 P A -1.6020
525 H A -2.5631
526 R A -3.3905
527 E A -3.1851
528 P A -1.5747
529 S A -0.9827
530 P A -0.1908
531 V A 0.6362
532 R A -1.3744
533 Y A -0.7164
534 D A -2.4350
535 N A -2.1747
536 L A -0.8832
537 S A -1.0905
538 R A -2.0282
539 H A -1.0951
540 I A 0.4915
541 V A -0.5609
542 A A -1.1626
543 S A -1.4591
544 L A -1.1983
545 Q A -2.0815
546 E A -3.2092
547 R A -3.1837
548 E A -2.8274
549 K A -3.2925
550 L A -1.3784
551 L A -0.8715
552 R A -2.6537
553 Q A -2.1020
554 S A -0.7204
555 P A -0.3612
556 P A 0.0886
557 L A 1.0277
558 A A -0.2531
559 G A -1.5846
560 R A -3.5063
561 E A -4.1853
562 E A -4.2509
563 E A -3.4332
564 P A -1.7502
565 G A -0.6599
566 L A 0.4496
567 G A -0.8425
568 D A -1.8922
569 S A -0.9534
570 G A -0.2790
571 I A 1.1162
572 Q A -0.4404
573 S A -0.5187
574 T A -0.6375
575 P A -0.6027
576 G A -0.8263
577 S A -0.9612
578 G A -1.1427
579 H A -1.2895
580 A A -1.0302
581 P A -1.3157
582 R A -2.0637
583 T A -1.2937
584 S A -0.8568
585 S A -0.6860
586 S A -0.8434
587 S A -1.6020
588 D A -2.9799
589 D A -3.2760
590 S A -2.7163
591 K A -3.2408
592 R A -3.0018
593 S A -1.2685
594 P A -0.0831
595 L A 0.8501
596 S A -0.2228
597 K A -1.5294
598 T A -0.6047
599 P A -0.0342
600 L A 0.7929
601 G A -0.6992
602 R A -1.6655
603 P A -0.8301
604 A A 0.0021
605 V A 0.9659
606 P A 0.0688
607 R A -0.6872
608 F A 0.2971
609 G A -0.8672
610 K A -2.1188
611 P A -1.7907
612 D A -2.4818
613 G A -1.1929
614 L A -0.1218
615 R A -2.0209
616 G A -2.0317
617 R A -2.3812
618 G A -0.8219
619 L A 0.6839
620 G A 0.0175
621 S A -0.6320
622 P A -1.3861
623 E A -2.1975
624 P A -1.4324
625 G A -0.9935
626 T A -0.3718
627 T A -0.2329
628 A A 0.1533
629 P A 0.6523
630 Y A 1.8427
631 L A 1.4411
632 G A -0.3806
633 R A -1.6006
634 S A -0.5879
635 M A 0.7717
636 S A 0.8623
637 Y A 1.2975
638 S A 0.0379
639 S A -0.9901
640 Q A -2.2619
641 K A -2.4309
642 A A -1.1722
643 P A -0.7587
644 S A -0.1632
645 G A 0.2790
646 V A 1.0114
647 S A -0.4845
648 E A -1.9795
649 T A -2.3559
650 E A -2.7656
651 E A -1.8520
652 V A 0.9012
653 A A 1.0840
654 L A 1.2648
655 Q A -0.2542
656 P A 0.5355
657 L A 2.0492
658 L A 2.2605
659 T A 0.4098
660 P A -1.2547
661 K A -3.1112
662 D A -3.1603
663 E A -2.4759
664 V A 0.1420
665 Q A -0.4092
666 L A 0.5576
667 K A -1.1023
668 T A -0.2989
669 T A 0.2882
670 Y A 0.8189
671 S A -0.4467
672 K A -1.9188
673 S A -1.8101
674 N A -2.2242
675 G A -1.7588
676 Q A -2.1879
677 P A -1.7882
678 K A -1.8164
679 S A -0.1213
680 I A 1.2472
681 G A 0.2641
682 S A -0.0471
683 A A -0.2905
684 S A -0.4378
685 P A -0.6234
686 G A -0.8472
687 P A -1.0322
688 G A -1.3109
689 Q A -1.6466
690 P A -0.7313
691 P A 0.0600
692 L A 1.1882
693 S A 0.2931
694 S A -0.4051
695 P A -0.7914
696 T A -1.3414
697 R A -1.8869
698 G A -0.7418
699 G A -0.2588
700 V A 0.6157
701 K A -0.9506
702 K A -1.7317
703 V A 0.1147
704 S A -0.0003
705 G A 0.4723
706 V A 1.2875
707 G A 0.0170
708 G A -0.1199
709 T A 0.2290
710 T A -0.0343
711 Y A 0.1735
712 E A -1.1338
713 I A 0.2399
714 S A 0.4450
715 V A 1.3438
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.1643 5.7017 View CSV PDB
4.5 -0.2318 5.7017 View CSV PDB
5.0 -0.3155 5.7017 View CSV PDB
5.5 -0.399 5.7017 View CSV PDB
6.0 -0.4651 5.7017 View CSV PDB
6.5 -0.5023 5.7016 View CSV PDB
7.0 -0.5109 5.7016 View CSV PDB
7.5 -0.5001 5.7016 View CSV PDB
8.0 -0.479 5.7015 View CSV PDB
8.5 -0.4505 5.7012 View CSV PDB
9.0 -0.4139 5.7001 View CSV PDB