Project name: 12f4dceada40fd

Status: done

Started: 2026-11-12 11:49:35
Settings
Chain sequence(s) MAPGPFSSGLLSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLILGNNQIRKVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGGGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGANDSATERRLVAAELTSSSVLIRWPAQRPVPGIRMYQVQYNSSADDSLVYRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYKVYGDGDSRRIKGTSRSPPRVSHVCSQTNGSSAQQASAPPAPDRYEALREVAVPAAIEAKAMEAEATSTELEVVLGRSLGGSATSLCLLPSEETSGEESRAVTGPRRSRSGALGPPTSAPPTLALVRGGSPARPRPQQRYSFDGDYGALFQSHSYPRRARRTKRHRSTPHLDGAGGGAAGEDGDLGLGSARARLAFTSTEWMLESTV input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:10:39)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/12f4dceada40fd/tmp/folded.pdb                 (00:10:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:21:59)
Show buried residues

Minimal score value
-3.9895
Maximal score value
5.4635
Average score
-0.4948
Total score value
-379.0181

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0281
2 A A 0.4105
3 P A -0.2782
4 G A -0.3270
5 P A 0.3182
6 F A 1.5546
7 S A 0.6315
8 S A 0.4218
9 G A 0.4473
10 L A 2.0099
11 L A 2.0482
12 S A 0.6789
13 P A -0.1868
14 P A -0.5274
15 P A -0.1093
16 A A 0.4682
17 A A 1.3624
18 L A 2.6189
19 P A 2.5053
20 F A 3.9248
21 L A 3.7261
22 L A 3.9627
23 L A 4.1107
24 L A 3.7202
25 W A 3.0423
26 A A 1.5339
27 G A 0.5444
28 A A 0.0440
29 S A -1.3395
30 R A -2.4953
31 G A -1.8208
32 Q A -1.7471
33 P A -0.9520
34 C A -0.1281
35 P A -0.4426
36 G A -0.9614
37 R A -1.7295
38 C A -0.1483
39 I A 1.4456
40 C A 0.5550
41 Q A -0.1107
42 N A -0.5688
43 V A 0.9665
44 A A 0.3388
45 P A 0.1067
46 T A -0.1202
47 L A -0.5297
48 T A -0.1995
49 M A 0.0000
50 L A 0.1550
51 C A 0.0000
52 A A -1.2092
53 K A -2.0037
54 T A -1.0978
55 G A -0.1115
56 L A 1.1247
57 L A 2.8521
58 F A 2.2763
59 V A 0.0000
60 P A 0.0000
61 P A -0.3568
62 A A -0.2336
63 I A 0.0000
64 D A -1.2288
65 R A -1.7735
66 R A -2.2864
67 V A 0.0000
68 V A -0.3163
69 E A -0.5673
70 L A 0.0000
71 R A -0.8992
72 L A 0.0000
73 T A -1.0714
74 D A -1.2709
75 N A 0.0000
76 F A 2.2037
77 I A 0.0000
78 A A 0.6356
79 A A -0.0783
80 V A 0.0000
81 R A -2.0253
82 R A -3.1173
83 R A -3.1199
84 D A 0.0000
85 F A 0.0000
86 A A -2.1733
87 N A -2.5036
88 M A 0.0000
89 T A -1.6667
90 S A -1.2598
91 L A 0.0000
92 V A -0.3549
93 H A -0.4878
94 L A 0.0000
95 T A -0.7520
96 L A 0.0000
97 S A 0.0000
98 R A -1.7528
99 N A 0.0000
100 T A -0.1890
101 I A 0.0000
102 G A -1.6604
103 Q A -1.7412
104 V A 0.0000
105 A A -1.4346
106 A A -1.2798
107 G A -1.6720
108 A A 0.0000
109 F A 0.0000
110 A A -2.1197
111 D A -2.5680
112 L A 0.0000
113 R A -2.9245
114 A A -1.4199
115 L A 0.0000
116 R A -1.5193
117 A A 0.0000
118 L A 0.0000
119 H A -0.5657
120 L A 0.0000
121 D A -1.2120
122 S A -1.6731
123 N A 0.0000
124 R A -2.9195
125 L A 0.0000
126 A A -2.5129
127 E A -3.2663
128 V A 0.0000
129 R A -2.6100
130 G A 0.0000
131 D A -1.6326
132 Q A -1.6527
133 L A 0.0000
134 R A -2.9565
135 G A -2.3346
136 L A 0.0000
137 G A -1.9912
138 N A -1.8167
139 L A 0.0000
140 R A -1.5957
141 H A -1.1037
142 L A 0.0000
143 I A -0.2993
144 L A 0.0000
145 G A 0.0000
146 N A -1.9289
147 N A 0.0000
148 Q A -2.9709
149 I A 0.0000
150 R A -3.8340
151 K A -3.9895
152 V A 0.0000
153 E A -2.2088
154 S A -1.6308
155 A A -1.6130
156 A A 0.0000
157 F A 0.0000
158 D A -2.2310
159 A A -1.6707
160 F A 0.0000
161 L A -0.8844
162 S A -0.7098
163 T A -0.7820
164 V A 0.0000
165 E A -1.4221
166 D A -1.0989
167 L A 0.0000
168 D A -0.4005
169 L A 0.0000
170 S A -0.4409
171 Y A -0.4993
172 N A 0.0000
173 N A -2.5385
174 L A 0.0000
175 E A -2.8602
176 A A -1.7328
177 L A 0.0000
178 P A 0.0000
179 W A 0.0000
180 E A -2.3235
181 A A 0.0000
182 V A 0.0000
183 G A -1.0198
184 Q A -1.3041
185 M A 0.0000
186 V A -0.1806
187 N A -1.1037
188 L A 0.0000
189 N A -1.3238
190 T A -1.0615
191 L A 0.0000
192 T A 0.0000
193 L A 0.0000
194 D A -0.3439
195 H A -0.6490
196 N A 0.0000
197 L A -1.1502
198 I A 0.0000
199 D A -1.8339
200 H A -2.0350
201 I A 0.0000
202 A A -1.5095
203 E A -2.2042
204 G A -1.2768
205 T A 0.0000
206 F A 0.0000
207 V A 0.6533
208 Q A -0.5324
209 L A 0.0000
210 H A -1.5273
211 K A -2.2903
212 L A 0.0000
213 V A -0.7427
214 R A -1.3134
215 L A 0.0000
216 D A -0.6625
217 M A 0.0000
218 T A -0.7265
219 S A -0.5248
220 N A 0.0000
221 R A -1.5403
222 L A 0.0000
223 H A -1.5363
224 K A -1.4401
225 L A 0.0000
226 P A 0.0000
227 P A -0.7426
228 D A -0.3466
229 G A -0.0069
230 L A 0.0000
231 F A 0.0000
232 L A 0.7691
233 R A -0.3048
234 S A -0.5114
235 Q A -1.3003
236 G A -1.5969
237 G A -1.4484
238 G A -1.4267
239 P A -1.5400
240 K A -2.3580
241 P A -1.2369
242 P A -0.8571
243 T A -0.8781
244 P A -0.8459
245 L A 0.0000
246 T A -0.5662
247 V A 0.0000
248 S A -0.7273
249 F A 0.0000
250 G A -0.8281
251 G A -0.7939
252 N A 0.0000
253 P A -0.9641
254 L A 0.0000
255 H A -0.8403
256 C A 0.0000
257 N A 0.0000
258 C A -0.1944
259 E A -0.2893
260 L A 0.0000
261 L A -0.6562
262 W A -0.4126
263 L A 0.0000
264 R A -1.2128
265 R A -1.8933
266 L A 0.0000
267 T A -1.4668
268 R A -2.4401
269 E A -3.2945
270 D A -3.2076
271 D A -2.7094
272 L A -0.7575
273 E A 0.0000
274 T A -0.6928
275 C A 0.0000
276 A A -1.2612
277 T A -1.3692
278 P A -1.2679
279 E A -2.4603
280 H A -2.1349
281 L A 0.0000
282 T A -2.0485
283 D A -2.5396
284 R A -1.6889
285 Y A -0.4577
286 F A 0.0000
287 W A -1.0881
288 S A -0.3674
289 I A 0.0000
290 P A -1.4796
291 E A -2.0135
292 E A -2.3208
293 E A -1.7339
294 F A 0.0000
295 L A -0.1017
296 C A -0.7606
297 E A -1.7119
298 P A -1.2684
299 P A 0.0000
300 L A 0.8037
301 I A -0.0674
302 T A -0.8183
303 R A -2.7479
304 Q A -2.4507
305 A A -2.2614
306 G A -2.0337
307 G A -2.1211
308 R A -2.4876
309 A A -0.7372
310 L A 1.1611
311 V A 1.0685
312 V A 1.2876
313 E A 0.3075
314 G A 0.0527
315 Q A -0.4440
316 A A -0.0805
317 V A 0.1307
318 S A -0.6884
319 L A 0.0000
320 R A -2.7058
321 C A 0.0000
322 R A -2.5593
323 A A 0.0000
324 V A -0.0024
325 G A -0.6086
326 D A -1.2803
327 P A -1.1313
328 E A -1.6239
329 P A -0.4966
330 V A 0.6882
331 V A -0.2660
332 H A -0.0078
333 W A 0.0000
334 V A -0.6681
335 A A -1.3520
336 P A -1.9877
337 D A -2.8269
338 G A -2.0005
339 R A -2.2177
340 L A -0.6374
341 L A -0.7659
342 G A -1.5418
343 N A -2.2563
344 S A -1.5111
345 S A -0.9442
346 R A -0.9063
347 T A -1.3539
348 R A -2.3791
349 V A -1.7946
350 R A -1.9510
351 G A -1.4012
352 D A -2.1414
353 G A 0.0000
354 T A 0.0000
355 L A 0.0000
356 D A -1.0554
357 V A 0.0000
358 T A -0.0139
359 I A 0.9583
360 T A 0.0000
361 T A -0.2095
362 L A -0.0402
363 R A -1.9963
364 D A -1.1518
365 S A -0.7494
366 G A -1.4146
367 T A -1.4461
368 F A 0.0000
369 T A -0.3113
370 C A 0.0000
371 I A 0.1174
372 A A 0.0000
373 S A -0.3921
374 N A -0.9464
375 A A -0.7736
376 A A -0.9335
377 G A -1.2697
378 E A -1.4244
379 A A -0.3908
380 T A -0.1615
381 A A 0.0000
382 P A -1.0395
383 V A 0.0000
384 E A -2.3513
385 V A 0.0000
386 C A 0.2479
387 V A 0.0000
388 V A 1.7620
389 P A 1.3196
390 L A 1.9759
391 P A 1.6169
392 L A 2.2959
393 M A 1.8521
394 A A 0.7606
395 P A 0.0607
396 P A -0.3086
397 P A -0.4210
398 A A -0.2279
399 A A -0.2372
400 P A -0.2602
401 P A -0.1543
402 P A 0.1069
403 L A 0.9192
404 T A -0.3779
405 E A -1.7641
406 P A -1.4213
407 G A -1.0971
408 S A -1.0448
409 S A -0.8684
410 D A -0.8985
411 I A 1.0637
412 A A 0.4968
413 T A -0.0401
414 P A -0.9664
415 G A -1.5391
416 R A -2.3639
417 P A -1.5631
418 G A -1.3928
419 A A -1.3722
420 N A -2.2681
421 D A -2.7469
422 S A -2.1304
423 A A -1.9040
424 T A -2.1798
425 E A -3.4054
426 R A -3.5791
427 R A -3.0914
428 L A 0.0000
429 V A -0.5338
430 A A -0.2058
431 A A -0.4111
432 E A -1.2109
433 L A 0.0720
434 T A -0.6059
435 S A -1.2105
436 S A -1.4589
437 S A -0.9052
438 V A 0.0000
439 L A 0.0684
440 I A 0.0000
441 R A -1.1600
442 W A 0.0000
443 P A -1.8952
444 A A -1.2945
445 Q A -1.5353
446 R A -2.0326
447 P A -1.0960
448 V A -0.3771
449 P A -0.8946
450 G A -1.2455
451 I A -1.0649
452 R A -2.0012
453 M A -0.5949
454 Y A 0.0000
455 Q A 0.2456
456 V A 0.0000
457 Q A 0.2975
458 Y A 0.0000
459 N A -1.2968
460 S A -1.6432
461 S A -1.5705
462 A A -1.6387
463 D A -2.8585
464 D A -2.7061
465 S A -1.2266
466 L A 0.0226
467 V A 0.6557
468 Y A 1.1453
469 R A -0.1810
470 M A 0.4595
471 I A 0.0000
472 P A -0.5536
473 S A -0.7922
474 T A -0.6451
475 S A -0.8085
476 Q A -1.5987
477 T A -0.5595
478 F A 0.1122
479 L A 0.7974
480 V A 0.0000
481 N A -1.8311
482 D A -2.4557
483 L A 0.0000
484 A A -1.2962
485 A A -1.5334
486 G A -1.6307
487 R A -1.7537
488 A A -1.1771
489 Y A 0.0000
490 D A -1.2044
491 L A 0.0000
492 C A 0.4263
493 V A 0.0000
494 L A 0.8942
495 A A 0.0000
496 V A 0.0000
497 Y A -0.9483
498 D A -1.3306
499 D A -0.7269
500 G A -0.7707
501 A A -0.2172
502 T A 0.0581
503 A A 0.1610
504 L A 0.9733
505 P A -0.2313
506 A A -0.2104
507 T A 0.0596
508 R A 0.2258
509 V A 1.6484
510 V A 0.4682
511 G A 0.1394
512 C A 0.1958
513 V A 0.0000
514 Q A -1.2602
515 F A 0.0000
516 T A -0.8071
517 T A 0.0000
518 A A -0.9313
519 G A -1.8094
520 D A -2.1944
521 P A -1.1913
522 A A -0.9755
523 P A -0.7814
524 C A -0.3812
525 R A -1.5541
526 P A -0.7540
527 L A 0.2156
528 R A -1.0548
529 A A -0.0278
530 H A 0.1129
531 F A 1.8618
532 L A 2.1872
533 G A 1.6679
534 G A 2.0082
535 T A 2.4976
536 M A 3.1793
537 I A 4.0254
538 I A 3.9149
539 A A 3.4054
540 I A 4.4357
541 G A 3.6094
542 G A 3.1623
543 V A 4.4581
544 I A 4.6853
545 V A 4.5667
546 A A 3.8083
547 S A 3.8847
548 V A 5.0338
549 L A 5.1484
550 V A 5.1324
551 F A 5.4635
552 I A 4.5308
553 V A 4.6199
554 L A 4.2980
555 L A 3.2394
556 M A 3.1314
557 I A 2.6609
558 R A 1.1883
559 Y A 1.5328
560 K A -0.0684
561 V A 1.2279
562 Y A 0.8644
563 G A -0.9973
564 D A -2.3725
565 G A -2.2481
566 D A -3.3442
567 S A -2.7111
568 R A -3.4308
569 R A -2.5646
570 I A -0.2579
571 K A -1.6178
572 G A -1.0287
573 T A -0.9104
574 S A -1.3021
575 R A -2.1297
576 S A -1.3950
577 P A -1.2784
578 P A -1.0187
579 R A -1.3077
580 V A 0.4773
581 S A 0.1435
582 H A 0.1628
583 V A 1.4410
584 C A 0.9984
585 S A -0.2070
586 Q A -1.3378
587 T A -1.4400
588 N A -1.9127
589 G A -1.3761
590 S A -0.7997
591 S A -0.6291
592 A A -0.9964
593 Q A -1.8892
594 Q A -1.8889
595 A A -0.8901
596 S A -0.4538
597 A A -0.2090
598 P A -0.3928
599 P A -0.4008
600 A A -0.5907
601 P A -1.4762
602 D A -2.6291
603 R A -2.5836
604 Y A -0.8356
605 E A -1.1793
606 A A -0.2478
607 L A -0.1589
608 R A -1.4954
609 E A -1.5076
610 V A 0.8762
611 A A 1.2930
612 V A 2.0337
613 P A 0.7142
614 A A 0.7387
615 A A 0.5954
616 I A 1.1218
617 E A -1.0815
618 A A -1.2945
619 K A -1.7920
620 A A -0.7473
621 M A -0.1412
622 E A -1.6780
623 A A -1.6090
624 E A -2.1919
625 A A -1.2573
626 T A -0.7628
627 S A -0.6731
628 T A -1.0036
629 E A -1.5378
630 L A 0.0247
631 E A -0.2522
632 V A 2.5016
633 V A 3.0320
634 L A 2.2836
635 G A -0.2338
636 R A -1.5429
637 S A -0.6915
638 L A 0.6262
639 G A -0.1252
640 G A -0.4617
641 S A -0.5596
642 A A -0.2584
643 T A 0.0758
644 S A 0.6658
645 L A 2.1820
646 C A 2.6540
647 L A 2.9976
648 L A 2.3206
649 P A 0.3248
650 S A -1.3172
651 E A -2.9051
652 E A -2.9220
653 T A -1.6307
654 S A -1.5573
655 G A -2.0791
656 E A -3.0625
657 E A -3.3108
658 S A -2.3692
659 R A -1.8706
660 A A -0.1602
661 V A 1.2604
662 T A 0.5661
663 G A -0.6045
664 P A -1.7731
665 R A -2.9990
666 R A -3.3458
667 S A -2.6040
668 R A -2.6055
669 S A -1.3776
670 G A -0.5596
671 A A 0.4210
672 L A 1.1838
673 G A 0.1224
674 P A -0.2893
675 P A -0.5546
676 T A -0.3495
677 S A -0.3244
678 A A -0.2547
679 P A -0.4172
680 P A -0.1135
681 T A 0.4811
682 L A 1.8250
683 A A 2.0059
684 L A 2.3341
685 V A 1.5737
686 R A -0.9454
687 G A -1.3091
688 G A -1.2998
689 S A -0.6533
690 P A -0.8585
691 A A -1.2593
692 R A -2.4034
693 P A -2.2467
694 R A -2.9126
695 P A -2.3227
696 Q A -2.6490
697 Q A -2.6644
698 R A -1.9264
699 Y A 0.1502
700 S A 0.1031
701 F A 0.7146
702 D A -1.3073
703 G A -1.3435
704 D A -1.7388
705 Y A 0.3743
706 G A 0.0490
707 A A 0.9203
708 L A 2.3048
709 F A 1.9831
710 Q A -0.2338
711 S A -0.3717
712 H A -0.9266
713 S A -0.5990
714 Y A 0.1162
715 P A -1.1677
716 R A -2.7476
717 R A -3.2509
718 A A -2.7723
719 R A -3.6124
720 R A -3.5604
721 T A -2.8359
722 K A -3.5001
723 R A -3.8584
724 H A -3.3130
725 R A -2.9423
726 S A -1.5871
727 T A -0.8971
728 P A -0.5173
729 H A -0.7101
730 L A 0.0173
731 D A -1.4316
732 G A -1.1342
733 A A -0.8958
734 G A -0.8948
735 G A -0.9278
736 G A -0.7414
737 A A -0.3530
738 A A -0.6326
739 G A -1.8562
740 E A -3.0309
741 D A -3.4068
742 G A -2.2569
743 D A -1.7765
744 L A 0.6706
745 G A 0.6353
746 L A 1.3446
747 G A -0.0353
748 S A -0.5631
749 A A -1.1094
750 R A -2.1952
751 A A -1.3204
752 R A -1.2586
753 L A 1.0146
754 A A 1.1562
755 F A 1.7672
756 T A 0.7581
757 S A 0.0990
758 T A 0.0567
759 E A -0.5653
760 W A 0.7849
761 M A 1.2137
762 L A 1.1836
763 E A -0.5705
764 S A 0.1178
765 T A 0.6556
766 V A 1.5042
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.1021 8.0472 View CSV PDB
4.5 -0.1597 8.0472 View CSV PDB
5.0 -0.2318 8.0472 View CSV PDB
5.5 -0.307 8.0472 View CSV PDB
6.0 -0.3748 8.0472 View CSV PDB
6.5 -0.429 8.0472 View CSV PDB
7.0 -0.4682 8.0472 View CSV PDB
7.5 -0.496 8.0472 View CSV PDB
8.0 -0.5164 8.0472 View CSV PDB
8.5 -0.5304 8.0472 View CSV PDB
9.0 -0.5365 8.0472 View CSV PDB