Project name: 1aaebb9cf0fd20

Status: done

Started: 2026-10-21 12:30:11
Settings
Chain sequence(s) MPSGFQQIGSEDGEPPQQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNATWLGRQGPGGPDSIPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLAVLGGALMGLANAAASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILVAQVLGLESMLGTATLWPLLLAITVLPALLQLLLLPFCPESPRYLYIIRNLEGPARKSLKRLTGWADVSDALAELKDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFELAGVEQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPSMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLRVPETRGRTFDQISATFRRTPSLLEQEVKPSTELEYLGPDEND input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:05)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:08:35)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/1aaebb9cf0fd20/tmp/folded.pdb                 (00:08:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:14:18)
Show buried residues

Minimal score value
-4.4762
Maximal score value
2.9324
Average score
-0.0588
Total score value
-29.9405

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8168
2 P A 0.3004
3 S A -0.0158
4 G A -0.0674
5 F A 0.9881
6 Q A -0.4865
7 Q A -0.4452
8 I A 0.7786
9 G A -0.8405
10 S A -1.8564
11 E A -2.9105
12 D A -3.6798
13 G A -2.8471
14 E A -3.3212
15 P A -2.1099
16 P A -2.2454
17 Q A -2.5103
18 Q A -2.1117
19 R A -1.9164
20 V A 0.7087
21 T A 0.1479
22 G A 0.1907
23 T A 0.6232
24 L A 0.0000
25 V A 2.4224
26 L A 1.8313
27 A A 0.0000
28 V A 0.0000
29 F A 2.0546
30 S A 0.0000
31 A A 0.0000
32 V A 0.8265
33 L A 0.0000
34 G A 0.0000
35 S A 0.0000
36 L A 0.9597
37 Q A 0.0000
38 F A 0.5963
39 G A 0.0000
40 Y A 0.0000
41 N A 0.0000
42 I A 0.8320
43 G A 0.0000
44 V A 0.0000
45 I A 0.0000
46 N A -1.4230
47 A A -1.0993
48 P A 0.0000
49 Q A -1.6650
50 K A -2.2590
51 V A -1.2677
52 I A 0.0000
53 E A -1.2871
54 Q A -1.6802
55 S A -0.9652
56 Y A 0.0000
57 N A -0.9387
58 A A -0.7379
59 T A -0.6569
60 W A -0.7785
61 L A -0.9586
62 G A -1.1169
63 R A -1.7008
64 Q A -1.8583
65 G A -1.3349
66 P A -1.0045
67 G A -1.1729
68 G A -1.5229
69 P A -1.4435
70 D A -2.0552
71 S A -1.2669
72 I A 0.0000
73 P A -1.1218
74 Q A -1.4718
75 G A -1.0414
76 T A -0.5778
77 L A -0.4874
78 T A -0.3314
79 T A -0.0253
80 L A 0.2647
81 W A 0.4741
82 A A 0.7665
83 L A 1.2432
84 S A 0.0000
85 V A 0.9866
86 A A 1.2482
87 I A 1.2524
88 F A 0.0000
89 S A 0.0000
90 V A 1.3631
91 G A 0.0000
92 G A 0.0000
93 M A 1.7708
94 I A 2.6812
95 S A 0.0000
96 S A 0.0000
97 F A 2.4138
98 L A 2.2177
99 I A 0.0000
100 G A 0.0000
101 I A 2.7394
102 I A 1.7570
103 S A 0.0000
104 Q A 0.9503
105 W A 1.5629
106 L A 0.7455
107 G A 0.0000
108 R A 0.0000
109 K A -0.5360
110 R A -0.5956
111 A A 0.0000
112 M A 0.0000
113 L A 0.6615
114 A A 0.5845
115 N A 0.0000
116 N A 0.0000
117 V A 2.6792
118 L A 1.8559
119 A A 0.0000
120 V A 2.3565
121 L A 2.1316
122 G A 0.0000
123 G A 0.0000
124 A A 1.3229
125 L A 1.2865
126 M A 0.0000
127 G A 1.1494
128 L A 1.5589
129 A A 0.0000
130 N A -0.1125
131 A A 0.1701
132 A A 0.2064
133 A A -0.2650
134 S A -0.1894
135 Y A -0.1498
136 E A -0.3539
137 I A 0.6969
138 L A 0.0000
139 I A 1.0541
140 L A 1.5512
141 G A 0.0000
142 R A 0.0000
143 F A 1.6383
144 L A 1.4526
145 I A 0.0000
146 G A 0.0000
147 A A 0.8922
148 Y A 0.0000
149 S A 0.0000
150 G A 0.0000
151 L A 0.0000
152 T A 0.0000
153 S A 0.0000
154 G A 0.0000
155 L A 0.0000
156 V A 0.0000
157 P A 0.0000
158 M A 0.0000
159 Y A 0.0000
160 V A 0.0000
161 G A 0.0000
162 E A 0.0000
163 I A 0.0000
164 A A 0.0000
165 P A -0.0800
166 T A -0.6228
167 H A -0.9601
168 L A -0.0172
169 R A 0.0000
170 G A 0.0000
171 A A 0.4222
172 L A 0.6836
173 G A 0.0000
174 T A 0.0000
175 L A 0.8941
176 N A 0.0000
177 Q A 0.4933
178 L A 1.2089
179 A A 0.0000
180 I A 1.0138
181 V A 0.0000
182 I A 1.6059
183 G A 0.0000
184 I A 1.5508
185 L A 1.5476
186 V A 1.5737
187 A A 0.0000
188 Q A 0.8550
189 V A 1.1839
190 L A 0.7929
191 G A 0.0000
192 L A 0.0000
193 E A -1.5063
194 S A -0.7288
195 M A 0.0955
196 L A 0.4235
197 G A 0.0000
198 T A -0.3597
199 A A -0.4459
200 T A 0.2990
201 L A 0.6602
202 W A 0.0000
203 P A 0.0000
204 L A 1.3230
205 L A 0.0000
206 L A 0.0000
207 A A 1.3220
208 I A 1.2332
209 T A 0.0000
210 V A 2.0222
211 L A 2.4214
212 P A 1.8034
213 A A 0.0000
214 L A 2.9087
215 L A 2.3691
216 Q A 0.0000
217 L A 2.4791
218 L A 2.7361
219 L A 2.1869
220 L A 0.0000
221 P A 1.1960
222 F A 2.2926
223 C A 0.0000
224 P A 0.0000
225 E A 0.0000
226 S A 0.0000
227 P A 0.0000
228 R A -0.6518
229 Y A 0.0000
230 L A -0.7900
231 Y A 0.0000
232 I A -1.1217
233 I A 0.0814
234 R A -1.2353
235 N A -1.7355
236 L A -1.3535
237 E A -2.8664
238 G A -1.9807
239 P A -1.9878
240 A A 0.0000
241 R A -3.6024
242 K A -3.4348
243 S A 0.0000
244 L A 0.0000
245 K A -2.9230
246 R A -2.5045
247 L A 0.0000
248 T A -1.2343
249 G A -1.5349
250 W A -1.4290
251 A A -1.3813
252 D A -2.4709
253 V A 0.0000
254 S A -2.0397
255 D A -2.6955
256 A A -2.1705
257 L A 0.0000
258 A A -2.3154
259 E A -3.3513
260 L A 0.0000
261 K A -3.3627
262 D A -3.9759
263 E A 0.0000
264 K A -3.2695
265 R A -4.4762
266 K A -4.0332
267 L A -3.4334
268 E A -4.3904
269 R A -4.0298
270 E A -3.0773
271 R A -3.0349
272 P A -1.6424
273 L A -0.5573
274 S A 0.1728
275 L A 1.0922
276 L A 1.2801
277 Q A -0.3223
278 L A 0.0000
279 L A 0.1382
280 G A -0.6898
281 S A -1.3537
282 R A -2.5270
283 T A -1.8830
284 H A -1.6097
285 R A -1.9233
286 Q A -1.4558
287 P A 0.0000
288 L A 0.0000
289 I A 0.2593
290 I A 0.0000
291 A A 0.0000
292 V A 0.9877
293 V A 0.8984
294 L A 0.0000
295 Q A 0.0000
296 L A 0.6378
297 S A 0.0000
298 Q A 0.0000
299 Q A 0.2389
300 L A 0.6961
301 S A 0.0000
302 G A 0.0000
303 I A 0.0000
304 N A 0.4053
305 A A 0.0000
306 V A 0.0000
307 F A 1.5397
308 Y A 1.7006
309 Y A 1.0396
310 S A 0.0000
311 T A 0.2500
312 S A 0.0112
313 I A 0.0000
314 F A 0.0000
315 E A -1.7071
316 L A 0.5210
317 A A 0.2065
318 G A -0.9031
319 V A -1.1028
320 E A -2.3326
321 Q A -1.8925
322 P A -0.8856
323 A A -0.0057
324 Y A 0.9272
325 A A 0.2182
326 T A 0.8709
327 I A 1.2275
328 G A 0.8521
329 A A 0.0000
330 G A 1.4957
331 V A 1.8573
332 V A 1.6352
333 N A 0.0000
334 T A 0.0000
335 V A 2.6639
336 F A 2.2693
337 T A 0.0000
338 L A 2.2619
339 V A 2.1371
340 S A 0.0000
341 V A 1.4869
342 L A 1.4957
343 L A 0.6351
344 V A 0.0000
345 E A -1.0134
346 R A -1.7020
347 A A -0.9054
348 G A 0.0000
349 R A 0.0000
350 R A -0.7137
351 T A -0.0107
352 L A 0.0000
353 H A 0.0000
354 L A 0.0000
355 L A 0.7998
356 G A 0.0000
357 L A 0.0000
358 A A 0.7901
359 G A 0.2010
360 M A 0.0000
361 C A 1.2426
362 G A 0.3755
363 C A 1.0247
364 A A 0.0000
365 I A 2.2675
366 L A 2.0887
367 M A 0.0000
368 T A 0.0000
369 V A 2.6851
370 A A 0.0000
371 L A 0.9945
372 L A 1.0414
373 L A 0.2774
374 L A -0.0363
375 E A -2.2019
376 R A -2.1530
377 V A -0.6173
378 P A -0.2989
379 S A 0.2725
380 M A 1.1550
381 S A 0.0000
382 Y A 2.1390
383 V A 2.0934
384 S A 0.0000
385 I A 1.7378
386 V A 2.3810
387 A A 0.0000
388 I A 0.0000
389 F A 1.2668
390 G A 0.8688
391 F A 0.0000
392 V A 0.0000
393 A A 0.0000
394 F A 0.7690
395 F A 0.0000
396 E A 0.0000
397 I A 0.0000
398 G A 0.0000
399 P A 0.0000
400 G A 0.0000
401 P A 0.0000
402 I A 0.0000
403 P A 0.0000
404 W A 0.0000
405 F A 0.0000
406 I A 0.0000
407 V A 0.0000
408 A A 0.0000
409 E A 0.0000
410 L A 0.0000
411 F A 0.0000
412 S A -0.4623
413 Q A 0.0000
414 G A -0.7357
415 P A 0.0000
416 R A 0.0000
417 P A 0.0000
418 A A 0.0000
419 A A 0.0000
420 M A 0.0000
421 A A 0.0000
422 V A 0.8186
423 A A 0.0000
424 G A 0.0000
425 F A 1.4021
426 S A 0.5684
427 N A 0.0000
428 W A 0.0000
429 T A 1.0536
430 C A 0.0000
431 N A 0.6257
432 F A 1.5116
433 I A 2.2759
434 V A 0.0000
435 G A 0.7105
436 M A 1.6432
437 G A 1.1782
438 F A 0.0000
439 Q A 0.0748
440 Y A 0.8125
441 V A 0.5744
442 A A -0.0074
443 D A -1.2674
444 A A -0.1163
445 M A 0.5411
446 G A 0.1011
447 P A 1.0095
448 Y A 2.0100
449 V A 0.0000
450 F A 0.0000
451 L A 2.3372
452 L A 2.0331
453 F A 0.0000
454 A A 0.0000
455 V A 2.9324
456 L A 2.2117
457 L A 0.0000
458 L A 2.5686
459 G A 1.8327
460 F A 2.0561
461 F A 2.6049
462 I A 2.6581
463 F A 1.7702
464 T A 0.0000
465 F A 2.3581
466 L A 1.9730
467 R A -0.3571
468 V A 0.0000
469 P A -0.4971
470 E A -1.3179
471 T A 0.0000
472 R A -1.9949
473 G A -1.5433
474 R A -1.5571
475 T A -1.2634
476 F A 0.0000
477 D A -1.5860
478 Q A -1.3365
479 I A 0.0000
480 S A -1.1126
481 A A -1.4969
482 T A -1.3436
483 F A -1.6417
484 R A -2.7441
485 R A -2.7500
486 T A -1.5706
487 P A -1.2105
488 S A -0.3888
489 L A 1.0395
490 L A 0.6217
491 E A -1.5543
492 Q A -1.8512
493 E A -1.8386
494 V A -0.4895
495 K A -1.9770
496 P A -1.2190
497 S A -1.2062
498 T A -1.1097
499 E A -1.1025
500 L A 0.5852
501 E A -0.6657
502 Y A 0.8121
503 L A 1.2381
504 G A -0.2486
505 P A -1.3874
506 D A -3.1602
507 E A -3.8400
508 N A -3.5988
509 D A -3.0801
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 0.2532 5.2399 View CSV PDB
4.5 0.213 5.2399 View CSV PDB
5.0 0.1608 5.2399 View CSV PDB
5.5 0.1043 5.2399 View CSV PDB
6.0 0.0515 5.2399 View CSV PDB
6.5 0.0097 5.2399 View CSV PDB
7.0 -0.0169 5.2399 View CSV PDB
7.5 -0.0309 5.2399 View CSV PDB
8.0 -0.0373 5.2399 View CSV PDB
8.5 -0.0386 5.2399 View CSV PDB
9.0 -0.0351 5.2399 View CSV PDB