Project name: 324af1af343df6

Status: done

Started: 2026-11-12 09:44:07
Settings
Chain sequence(s) MLACLTRGNLLDVLQEGFNEQQLQAYVAWVNAQLKKRPSVKPVQDLRQDLRDGVILAYLIEIVGQLALDSDASVDERTDFFLLHSPFKAAGEKLTGVQLSPSNQQEMKSNVERVLQFVASKKIRMHQTSAKDIVEGNLKSIMRLVLALAAHFKPGSSRTVSQGRDSKAPVQSHQPHCATAVAQGAAAALADVCHDVSRSGRDVFRYRQRNASVDGEIENPYWSVRALVQQYEGQQKSPSESSCSSLTSPSPIHSAKSESIITQAEEKADFVIIPSEGIENRTDEPDSPSSRDWRPGSRGTYLEATWEEQLLEQQEHLEKEMEEAKKMISGLQALLLNGSLPEDEQERPVALCEPGVNPEEQLIIIRSRLDQSVEENQDLKKELLKCKQEARNLQGIKDALQQRLTQQDTSVLQLKQELLRANMDKDELHNQNVDLQRKLEERNRLLGEYKKELGQKDRLFQQQQAKLEEALRKLSDASYQQVDLERELEQKDVLLAHCMKGETDEVTNYNSHSSQRNGFVLPVAGRGATTVTHRGPQTSDLQLVRDALRSLRNSFSGHDPQHHTIDSLEQGISSLMERLHVVETQKKQERKVGGRSPRNQASSEYRASWPPNSTLPHSQSSPAVSSTCTKVLYFTDRSLTPFMVNIPKRLGEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEVFHDDDAIPGWEGKIVAWVEEDHREN input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:03)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:11)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:11)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:46:50)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/324af1af343df6/tmp/folded.pdb                 (00:46:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:59:29)
Show buried residues

Minimal score value
-5.0831
Maximal score value
4.1803
Average score
-1.2523
Total score value
-890.3792

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.8099
2 L A 1.9307
3 A A 1.0108
4 C A 1.1056
5 L A 0.6827
6 T A -0.4690
7 R A -2.1468
8 G A -1.7173
9 N A -1.5632
10 L A -0.2793
11 L A 0.1291
12 D A -1.6676
13 V A -0.0424
14 L A 0.0000
15 Q A -1.9718
16 E A -2.3832
17 G A -1.2771
18 F A -0.4880
19 N A -1.8933
20 E A -2.7601
21 Q A -2.5817
22 Q A -1.4350
23 L A -1.4668
24 Q A -2.3512
25 A A -0.8688
26 Y A 0.0000
27 V A 0.0000
28 A A -0.4603
29 W A -0.0327
30 V A 0.0000
31 N A -1.3099
32 A A -0.9397
33 Q A -1.2058
34 L A 0.0000
35 K A -2.9748
36 K A -2.6278
37 R A -2.0712
38 P A -1.6826
39 S A -1.1717
40 V A -1.4090
41 K A -2.2704
42 P A -1.8424
43 V A 0.0000
44 Q A -2.4709
45 D A -2.4432
46 L A 0.0000
47 R A -2.9106
48 Q A -2.9075
49 D A -2.0875
50 L A 0.0000
51 R A -2.4001
52 D A -1.3593
53 G A 0.0000
54 V A 0.0000
55 I A 0.0000
56 L A 0.0000
57 A A 0.0000
58 Y A -0.0301
59 L A 0.0000
60 I A 0.0000
61 E A -1.5753
62 I A 0.0000
63 V A 0.0000
64 G A -1.2265
65 Q A -1.7406
66 L A -0.8703
67 A A -0.7099
68 L A -0.1842
69 D A -1.8693
70 S A -1.6110
71 D A -2.0056
72 A A -0.9933
73 S A -0.3789
74 V A 0.1306
75 D A -2.1572
76 E A -3.1865
77 R A -3.1713
78 T A -1.5662
79 D A -0.7589
80 F A 2.1297
81 F A 3.5416
82 L A 3.3084
83 L A 2.1695
84 H A 0.1025
85 S A -0.1534
86 P A 0.1317
87 F A 0.9138
88 K A -0.8760
89 A A -0.7083
90 A A -1.0007
91 G A -1.9418
92 E A -3.0909
93 K A -2.8920
94 L A -1.6299
95 T A -1.1267
96 G A -0.6529
97 V A -0.5517
98 Q A -0.1827
99 L A 1.0187
100 S A 0.0894
101 P A -0.9231
102 S A -1.0429
103 N A -1.9486
104 Q A -2.9061
105 Q A -2.6644
106 E A -2.1449
107 M A -2.0836
108 K A -2.9552
109 S A -2.2238
110 N A 0.0000
111 V A 0.0000
112 E A -2.8269
113 R A -2.0013
114 V A 0.0000
115 L A -1.3184
116 Q A -2.1562
117 F A 0.0000
118 V A 0.0000
119 A A -1.6142
120 S A -1.3959
121 K A -2.1134
122 K A -2.7247
123 I A -1.9193
124 R A -2.5686
125 M A 0.0000
126 H A -1.1108
127 Q A -1.6203
128 T A -1.2159
129 S A -1.4856
130 A A -2.0423
131 K A -3.1842
132 D A -2.2587
133 I A 0.0000
134 V A 0.0000
135 E A -3.2814
136 G A 0.0000
137 N A -2.2114
138 L A -1.2000
139 K A -0.9786
140 S A 0.0000
141 I A 0.0000
142 M A 0.0000
143 R A -0.3088
144 L A 0.0000
145 V A 0.0000
146 L A 0.0000
147 A A 0.0000
148 L A 0.0000
149 A A -0.4880
150 A A -0.6245
151 H A -1.4659
152 F A 0.0000
153 K A -1.7775
154 P A -1.2351
155 G A -1.3555
156 S A -1.4610
157 S A -1.4361
158 R A -1.6507
159 T A -0.3779
160 V A 0.7265
161 S A -0.5250
162 Q A -1.6862
163 G A -2.1698
164 R A -3.2981
165 D A -3.3848
166 S A -2.3748
167 K A -2.1906
168 A A -0.6013
169 P A 0.0513
170 V A 1.0440
171 Q A -0.7330
172 S A -1.2316
173 H A -1.9812
174 Q A -2.0211
175 P A -1.3749
176 H A -0.9042
177 C A 0.2275
178 A A 0.5090
179 T A 0.2315
180 A A 0.3865
181 V A 1.3048
182 A A 0.3242
183 Q A -0.5829
184 G A -0.0595
185 A A 0.2541
186 A A 0.2744
187 A A 0.1297
188 A A 0.3390
189 L A 1.2278
190 A A 0.2709
191 D A -0.9420
192 V A 0.7685
193 C A 0.4333
194 H A -1.4693
195 D A -1.8119
196 V A -0.0653
197 S A -1.5450
198 R A -2.7085
199 S A -1.4508
200 G A -1.0657
201 R A -1.7371
202 D A -1.2669
203 V A 0.8378
204 F A 0.4834
205 R A -1.5940
206 Y A -0.6502
207 R A -2.0947
208 Q A -2.7720
209 R A -3.2656
210 N A -2.8000
211 A A -1.9670
212 S A -0.7426
213 V A 0.5315
214 D A -1.7399
215 G A -1.5581
216 E A -1.9739
217 I A -0.1848
218 E A -1.7206
219 N A -1.5991
220 P A -0.2003
221 Y A 1.1559
222 W A 1.4392
223 S A 0.8718
224 V A 1.3223
225 R A -0.9303
226 A A -0.1126
227 L A 0.5291
228 V A -0.1477
229 Q A -1.7803
230 Q A -1.3912
231 Y A -0.5722
232 E A -2.6460
233 G A -2.6080
234 Q A -2.9273
235 Q A -3.0240
236 K A -3.0513
237 S A -1.8608
238 P A -1.2224
239 S A -1.4865
240 E A -2.0923
241 S A -1.2837
242 S A -0.4061
243 C A 0.2408
244 S A 0.3196
245 S A 0.5525
246 L A 1.3247
247 T A 0.4771
248 S A -0.1631
249 P A -0.5505
250 S A -0.0608
251 P A 0.4163
252 I A 1.3106
253 H A -0.1716
254 S A -0.6313
255 A A -1.1219
256 K A -2.1779
257 S A -1.9891
258 E A -1.9684
259 S A 0.2638
260 I A 2.5488
261 I A 2.7165
262 T A 0.4154
263 Q A -1.3875
264 A A -1.8890
265 E A -3.5001
266 E A -3.7422
267 K A -3.1827
268 A A -1.9434
269 D A -0.6256
270 F A 2.0151
271 V A 3.7421
272 I A 4.1803
273 I A 3.1886
274 P A 0.6264
275 S A -0.8931
276 E A -1.8812
277 G A -0.8658
278 I A -0.1418
279 E A -2.2851
280 N A -3.0160
281 R A -3.2454
282 T A -2.9979
283 D A -3.4070
284 E A -3.2915
285 P A -2.6244
286 D A -2.4536
287 S A -1.3012
288 P A -0.8559
289 S A -0.8641
290 S A -1.7315
291 R A -2.6448
292 D A -2.5365
293 W A -0.9658
294 R A -1.8550
295 P A -1.4273
296 G A -1.4897
297 S A -1.7164
298 R A -2.1736
299 G A -0.9755
300 T A 0.0109
301 Y A 1.2312
302 L A 1.3714
303 E A -0.9182
304 A A -0.6523
305 T A -0.4747
306 W A -0.1212
307 E A -1.5937
308 E A -2.5248
309 Q A -2.0541
310 L A -0.5078
311 L A -0.9331
312 E A -3.2209
313 Q A -2.9973
314 Q A -3.2693
315 E A -4.0500
316 H A -3.5316
317 L A -2.9640
318 E A -4.5405
319 K A -5.0831
320 E A -4.6088
321 M A -3.2575
322 E A -4.5639
323 E A -4.3284
324 A A -2.6282
325 K A -3.0104
326 K A -2.7322
327 M A -0.0396
328 I A 0.6474
329 S A -0.0310
330 G A 0.0000
331 L A 1.6452
332 Q A 0.9117
333 A A 0.9396
334 L A 1.6777
335 L A 2.1457
336 L A 1.7102
337 N A -0.1092
338 G A 0.1368
339 S A -0.6835
340 L A -0.8398
341 P A -2.2203
342 E A -3.7671
343 D A -4.6541
344 E A -4.8845
345 Q A -4.6035
346 E A -4.5041
347 R A -3.6162
348 P A -1.3133
349 V A 1.1517
350 A A 0.6004
351 L A 1.2043
352 C A 0.2151
353 E A -1.5148
354 P A -1.0267
355 G A -0.8558
356 V A -0.8918
357 N A -1.4802
358 P A -0.8373
359 E A -1.4028
360 E A -0.9430
361 Q A 0.2537
362 L A 1.1091
363 I A 1.6679
364 I A 1.6312
365 I A 0.5197
366 R A -0.7839
367 S A -0.5915
368 R A -1.6029
369 L A -0.7557
370 D A -1.9152
371 Q A -2.9745
372 S A -2.2632
373 V A -1.1334
374 E A -3.6831
375 E A -4.0379
376 N A -3.4576
377 Q A -4.0648
378 D A -4.2926
379 L A -2.7252
380 K A -3.5536
381 K A -3.9487
382 E A -3.3307
383 L A -1.6569
384 L A -1.2937
385 K A -3.0197
386 C A -2.1888
387 K A -2.6891
388 Q A -3.2522
389 E A -2.9451
390 A A -2.2455
391 R A -3.5348
392 N A -2.2993
393 L A -1.3384
394 Q A -2.5801
395 G A -1.9270
396 I A -0.5644
397 K A -2.7525
398 D A -2.9820
399 A A -1.6147
400 L A -1.3441
401 Q A -2.5418
402 Q A -2.8938
403 R A -3.1597
404 L A -1.3851
405 T A -2.0155
406 Q A -2.7131
407 Q A -2.6652
408 D A -2.0831
409 T A -1.2985
410 S A -0.9561
411 V A -0.4798
412 L A -0.0246
413 Q A -0.9030
414 L A 0.1240
415 K A -0.9455
416 Q A -1.4178
417 E A -1.0597
418 L A 0.2901
419 L A -0.1438
420 R A -2.0847
421 A A -1.9429
422 N A -1.9129
423 M A -1.7767
424 D A -3.2862
425 K A -3.4442
426 D A -4.2885
427 E A -3.9285
428 L A -2.6232
429 H A -3.1719
430 N A -3.5482
431 Q A -3.2688
432 N A -2.8610
433 V A -1.4639
434 D A -3.0320
435 L A -2.2477
436 Q A -3.1985
437 R A -4.3879
438 K A -4.3047
439 L A -2.9455
440 E A -4.7199
441 E A -4.6191
442 R A -4.2597
443 N A -3.5950
444 R A -3.4747
445 L A -1.6653
446 L A -1.2557
447 G A -2.0796
448 E A -2.2566
449 Y A -0.9940
450 K A -2.6632
451 K A -3.5111
452 E A -3.2192
453 L A -2.4399
454 G A -3.0386
455 Q A -3.0695
456 K A -2.6877
457 D A -3.1265
458 R A -2.9737
459 L A -0.8055
460 F A -0.7695
461 Q A -2.4511
462 Q A -2.5606
463 Q A -2.6633
464 Q A -2.7435
465 A A -2.5352
466 K A -3.2883
467 L A -1.9442
468 E A -3.1240
469 E A -3.5794
470 A A -1.7240
471 L A -0.7494
472 R A -2.8140
473 K A -2.0239
474 L A 0.0053
475 S A -0.6265
476 D A -1.1059
477 A A -0.5764
478 S A -0.0629
479 Y A 0.5266
480 Q A -0.9567
481 Q A -1.2287
482 V A 0.0935
483 D A -1.5564
484 L A -0.8745
485 E A -2.3087
486 R A -3.9186
487 E A -3.6831
488 L A -2.2059
489 E A -3.6192
490 Q A -3.0291
491 K A -2.8570
492 D A -2.1786
493 V A 0.2036
494 L A 1.0360
495 L A 0.7546
496 A A 0.2717
497 H A -0.4626
498 C A 0.2641
499 M A -0.3573
500 K A -2.2933
501 G A -2.4461
502 E A -3.0591
503 T A -2.4079
504 D A -3.1439
505 E A -2.3171
506 V A 0.1192
507 T A -0.2227
508 N A -0.5547
509 Y A 0.1897
510 N A -1.2198
511 S A -1.1777
512 H A -1.5231
513 S A -1.0895
514 S A -1.7113
515 Q A -2.6310
516 R A -2.9978
517 N A -2.1267
518 G A -0.4016
519 F A 2.4410
520 V A 3.3637
521 L A 3.1177
522 P A 1.9264
523 V A 1.9117
524 A A 0.0950
525 G A -1.0041
526 R A -2.0709
527 G A -1.4487
528 A A -0.7153
529 T A 0.1957
530 T A 0.6425
531 V A 1.2946
532 T A -0.1048
533 H A -1.6664
534 R A -2.5677
535 G A -2.1600
536 P A -1.8961
537 Q A -2.2449
538 T A -1.6193
539 S A -1.5644
540 D A -1.9086
541 L A -0.9597
542 Q A -0.9807
543 L A 0.0494
544 V A -0.5216
545 R A -2.0140
546 D A -1.7268
547 A A -0.9018
548 L A 0.0000
549 R A -2.7068
550 S A -1.7286
551 L A -1.0156
552 R A -1.9489
553 N A -1.9302
554 S A -0.9445
555 F A -0.6850
556 S A -1.1035
557 G A -1.4027
558 H A -1.5308
559 D A -1.4721
560 P A -1.3379
561 Q A -1.6573
562 H A -1.7007
563 H A -1.8323
564 T A -1.3801
565 I A 0.0000
566 D A -2.0439
567 S A -1.3601
568 L A -0.4637
569 E A -1.7952
570 Q A -1.6243
571 G A -0.7552
572 I A -0.5263
573 S A -0.9284
574 S A -1.0434
575 L A 0.0406
576 M A -0.4915
577 E A -2.0838
578 R A -1.6977
579 L A -0.4827
580 H A -1.5820
581 V A -0.5347
582 V A -1.2231
583 E A -2.8040
584 T A -2.3309
585 Q A -3.0441
586 K A -4.5028
587 K A -4.1317
588 Q A -4.3240
589 E A -4.4480
590 R A -4.3731
591 K A -3.2649
592 V A -0.7191
593 G A -1.3358
594 G A -1.2016
595 R A -2.3298
596 S A -1.7931
597 P A -1.9307
598 R A -2.8773
599 N A -2.8543
600 Q A -2.3082
601 A A -0.9276
602 S A -0.9165
603 S A -1.1093
604 E A -1.7467
605 Y A -0.7306
606 R A -1.7045
607 A A -0.7411
608 S A 0.0033
609 W A 0.9108
610 P A -0.1404
611 P A -0.7565
612 N A -1.5861
613 S A -0.7435
614 T A 0.2361
615 L A 1.0951
616 P A -0.0157
617 H A -1.0935
618 S A -1.2146
619 Q A -1.6348
620 S A -0.9926
621 S A -0.4936
622 P A -0.0276
623 A A 0.6945
624 V A 1.5680
625 S A 0.4394
626 S A -0.2901
627 T A -0.5476
628 C A -1.1204
629 T A 0.0000
630 K A -1.5069
631 V A 0.0000
632 L A 0.8454
633 Y A 1.3315
634 F A 0.7104
635 T A 0.0000
636 D A -2.5644
637 R A -2.5068
638 S A -0.5013
639 L A 0.9790
640 T A 0.6926
641 P A 1.2192
642 F A 1.9568
643 M A 1.4321
644 V A 0.2945
645 N A -1.3607
646 I A 0.0000
647 P A -1.2341
648 K A -1.9436
649 R A -2.0943
650 L A -1.1945
651 G A -1.4520
652 E A -2.3306
653 V A 0.0000
654 T A -2.4839
655 L A 0.0000
656 K A -3.3402
657 D A -2.1158
658 F A 0.0000
659 K A -2.4500
660 A A -1.5181
661 A A -1.2091
662 I A 0.0000
663 D A -2.6599
664 R A -2.6572
665 E A -3.0458
666 G A -2.4384
667 N A -2.8453
668 H A -2.2766
669 R A -1.2310
670 Y A 0.0000
671 H A 0.0000
672 F A 0.0000
673 K A -1.0552
674 A A 0.0000
675 L A 0.8888
676 D A -0.1593
677 P A -0.4742
678 E A -0.9667
679 F A 1.0955
680 G A 0.5682
681 T A 0.1921
682 V A -0.4539
683 K A -2.0471
684 E A -1.7309
685 E A -1.0707
686 V A 0.0000
687 F A 0.4887
688 H A -1.7651
689 D A -3.2167
690 D A -3.3830
691 D A -2.3303
692 A A -1.7343
693 I A 0.0000
694 P A -0.4652
695 G A -0.8215
696 W A -0.9113
697 E A -2.2548
698 G A -1.8874
699 K A -1.8513
700 I A 0.0000
701 V A -0.2638
702 A A 0.0000
703 W A -0.4956
704 V A 0.0000
705 E A -2.3253
706 E A -2.7920
707 D A -2.7167
708 H A -3.2260
709 R A -3.8130
710 E A -3.6290
711 N A -2.6761
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.9491 7.3407 View CSV PDB
4.5 -1.0669 7.2711 View CSV PDB
5.0 -1.2197 7.1933 View CSV PDB
5.5 -1.3784 7.1189 View CSV PDB
6.0 -1.513 7.0523 View CSV PDB
6.5 -1.6025 6.9871 View CSV PDB
7.0 -1.6425 6.9139 View CSV PDB
7.5 -1.6458 6.8323 View CSV PDB
8.0 -1.6284 6.7488 View CSV PDB
8.5 -1.5974 6.672 View CSV PDB
9.0 -1.5522 6.6128 View CSV PDB