Project name: 3233_exp_1mer

Status: done

Started: 2026-11-11 16:10:31
Settings
Chain sequence(s) GVGNASGDWHCDSTWSEGKVTTTSTRTWVLPTYNNHLYLRLGTTSNSNTYNGFSTPWGYFDFNRFHCHFSPRDWQRLINNNWGLRPKAMRVKIFNIQVKEVTTSNGETTVANNLTSTVQIFADSSYELPYVMDAGQEGSLPPFPNDVFMVPQYGYCGIVTGENQNQTDRNAFYCLEYFPSQMLRTGNNFEMAYNFEKVPFHSMYAHSQSLDRLMNPLLDQYLWHLQSTTSGETLNQGNAATTFGKIRSGDFAFYRKNWLPGPCVKQQRFSKTASQNYKIPASGGNALLKYDTHYTLNNRWSNIAPGPPMATAGPSDGDFSNAQLIFPGPSVTGNTTTSANNLLFTSEEEIAATNPRDTDMFGQIADNNQNATTAPITGNVTAMGVLPGMVWQNRDIYYQGPIWAKIPHADGHFHPSPLIGGFGLKHPPPQIFIKNTPVPANPATTFTAARVDSFITQYSTGQVAVQIEWEIEKERSKRWNPEVQFTSNYGNQSSMLWAPDTTGKYTEPRVIGSRYLTNHL input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage No
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:03)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/36878ac5a5bc4a/tmp/folded.pdb                 (00:00:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:35)
Show buried residues

Minimal score value
-3.1381
Maximal score value
1.973
Average score
-0.4826
Total score value
-250.9588

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
214 G A -0.4595
215 V A 0.8014
216 G A -0.3841
217 N A -1.2373
218 A A -1.0531
219 S A -1.0673
220 G A -1.3444
221 D A -1.6692
222 W A -0.6715
223 H A -1.2065
224 C A -0.9816
225 D A -1.7929
226 S A -0.9734
227 T A -0.5080
228 W A -0.6104
229 S A -1.2715
230 E A -2.4729
231 G A -2.0744
232 K A -2.0117
233 V A 0.0000
234 T A -0.8249
235 T A 0.0000
236 T A 0.0000
237 S A 0.0000
238 T A 0.0000
239 R A 0.0000
240 T A 0.4533
241 W A 0.0000
242 V A 1.1842
243 L A 0.0000
244 P A 0.1877
245 T A -0.3168
246 Y A -0.3889
247 N A -0.6267
248 N A -1.4937
249 H A -0.6056
250 L A -0.0373
251 Y A 0.3975
252 L A 0.1595
253 R A -0.9432
254 L A -0.0938
255 G A -0.3860
256 T A -0.6076
257 T A -1.3812
258 S A -1.5366
259 N A -2.3816
260 S A -1.8352
261 N A -1.8444
262 T A 0.0000
263 Y A 0.1351
264 N A 0.0000
265 G A 0.0000
266 F A 0.4204
267 S A 0.0957
268 T A 0.0000
269 P A 0.0000
270 W A 0.0000
271 G A 0.0000
272 Y A 0.0000
273 F A 0.0000
274 D A 0.0000
275 F A 0.0000
276 N A 0.0000
277 R A -1.0299
278 F A 0.0000
279 H A 0.0000
280 C A 0.0000
281 H A 0.0000
282 F A 0.0000
283 S A -0.8736
284 P A -0.9386
285 R A -1.7156
286 D A 0.0000
287 W A 0.0000
288 Q A -1.4955
289 R A -1.5822
290 L A 0.0000
291 I A 0.0000
292 N A -1.0109
293 N A -2.1047
294 N A 0.0000
295 W A -1.0133
296 G A 0.0000
297 L A 0.0000
298 R A -1.0467
299 P A 0.0000
300 K A -1.8515
301 A A -1.4455
302 M A 0.0000
303 R A -1.7563
304 V A 0.0000
305 K A -1.3198
306 I A 0.0000
307 F A 0.0000
308 N A -1.0444
309 I A 0.0000
310 Q A -0.7089
311 V A 0.0000
312 K A -0.5043
313 E A -0.3090
314 V A 0.3987
315 T A -0.0963
316 T A -0.7809
317 S A -1.3520
318 N A -2.1979
319 G A -2.0380
320 E A -2.4309
321 T A -1.0639
322 T A -0.1037
323 V A 0.7883
324 A A 0.0195
325 N A -0.9206
326 N A -0.3773
327 L A 0.7901
328 T A 0.2380
329 S A 0.0000
330 T A -0.2412
331 V A 0.0000
332 Q A 0.0000
333 I A 0.0000
334 F A 0.0000
335 A A -0.2382
336 D A 0.0000
337 S A -0.6716
338 S A -0.9322
339 Y A -0.9647
340 E A -1.6753
341 L A 0.0000
342 P A -0.1101
343 Y A 0.0226
344 V A 0.0641
345 M A 0.0000
346 D A -0.6281
347 A A -0.8295
348 G A -1.4540
349 Q A -2.4400
350 E A -2.6335
351 G A -1.2610
352 S A -0.8393
353 L A 0.0000
354 P A -0.1856
355 P A -0.3016
356 F A -0.0328
357 P A -0.4583
358 N A -1.1818
359 D A -0.4762
360 V A 1.3710
361 F A 0.0000
362 M A 1.5050
363 V A 0.0000
364 P A -0.3701
365 Q A -0.3426
366 Y A 0.0000
367 G A -0.0339
368 Y A 0.0000
369 C A 1.5144
370 G A 1.1553
371 I A 1.6059
372 V A 0.0000
373 T A -0.8597
374 G A -1.6182
375 E A -2.6996
376 N A -2.6886
377 Q A 0.0000
378 N A -1.8140
379 Q A -1.9677
380 T A -1.9585
381 D A -2.9177
382 R A -2.4710
383 N A -1.1029
384 A A 0.3180
385 F A 1.5334
386 Y A 1.3637
387 C A 1.0300
388 L A 0.0000
389 E A -0.4512
390 Y A 0.9278
391 F A 0.2152
392 P A -0.1168
393 S A -0.2282
394 Q A -0.3352
395 M A 0.2269
396 L A 0.0000
397 R A -1.1419
398 T A -0.7776
399 G A -0.9406
400 N A -1.3559
401 N A -1.5191
402 F A 0.0000
403 E A -1.6803
404 M A -0.8623
405 A A -0.9698
406 Y A -0.9285
407 N A -2.0355
408 F A 0.0000
409 E A -2.1622
410 K A -2.2708
411 V A 0.0000
412 P A -0.5200
413 F A -0.1848
414 H A -0.0095
415 S A 0.0249
416 M A 0.0000
417 Y A -0.0531
418 A A -0.4491
419 H A -0.6501
420 S A -0.8912
421 Q A -0.9753
422 S A -0.8722
423 L A 0.0000
424 D A -1.5554
425 R A -1.5585
426 L A -0.5147
427 M A -0.1392
428 N A -0.0683
429 P A 0.1536
430 L A 1.4739
431 L A 1.3858
432 D A -0.4517
433 Q A 0.1525
434 Y A 1.4573
435 L A 1.1793
436 W A 1.6889
437 H A 1.2556
438 L A 1.2407
439 Q A -0.0230
440 S A -0.3910
441 T A -0.2585
442 T A -1.4658
443 S A -1.6092
444 G A -1.9546
445 E A -2.1644
446 T A -1.1770
447 L A -0.0618
448 N A -1.5120
449 Q A -2.2958
450 G A -2.2118
451 N A -1.8618
452 A A -0.8973
453 A A -0.4408
454 T A 0.1147
455 T A 0.7352
456 F A 1.9730
457 G A 0.5831
458 K A -0.1208
459 I A 0.0000
460 R A -1.7819
461 S A -1.0863
462 G A -1.0820
463 D A -1.5133
464 F A -0.9234
465 A A -0.1104
466 F A 0.5510
467 Y A 0.0000
468 R A -1.3313
469 K A -1.8146
470 N A -1.4659
471 W A 0.2421
472 L A 0.9855
473 P A 0.8139
474 G A 0.0000
475 P A 0.0000
476 C A 0.0000
477 V A -0.0083
478 K A -0.9071
479 Q A 0.0000
480 Q A -1.5552
481 R A -2.4132
482 F A -1.1889
483 S A -1.1711
484 K A -1.4018
485 T A -1.0227
486 A A -0.7293
487 S A -1.0198
488 Q A -1.5736
489 N A -1.1475
490 Y A 0.1339
491 K A -0.9419
492 I A 0.2405
493 P A -0.3976
494 A A -0.0938
495 S A -0.6042
496 G A -1.0469
497 G A -1.2905
498 N A -1.1336
499 A A -0.3299
500 L A 0.4773
501 L A 0.2507
502 K A -0.2812
503 Y A 0.7544
504 D A 0.0000
505 T A 0.0418
506 H A 0.3638
507 Y A 1.0114
508 T A 0.4869
509 L A 0.5339
510 N A -0.9843
511 N A -1.8030
512 R A -1.3823
513 W A -0.2851
514 S A -0.0899
515 N A -0.3662
516 I A 0.1263
517 A A 0.3289
518 P A 0.0000
519 G A 0.0000
520 P A 0.2689
521 P A 0.1100
522 M A 0.0000
523 A A 0.0000
524 T A 0.0000
525 A A 0.0000
526 G A -1.0163
527 P A -0.7476
528 S A -0.9206
529 D A -1.1680
530 G A -1.1725
531 D A -1.2457
532 F A -0.6362
533 S A 0.0000
534 N A -0.6378
535 A A 0.0000
536 Q A 0.0000
537 L A 0.9022
538 I A 1.3944
539 F A 0.6443
540 P A -0.2305
541 G A -0.4853
542 P A -0.5329
543 S A -0.4899
544 V A -0.5047
545 T A -0.5825
546 G A -1.1106
547 N A -1.5353
548 T A -0.8815
549 T A -0.6748
550 T A -0.4065
551 S A -0.7364
552 A A -0.7674
553 N A -1.6113
554 N A -1.0881
555 L A -0.2449
556 L A 0.0202
557 F A 0.0000
558 T A 0.0000
559 S A 0.0000
560 E A 0.0000
561 E A -1.9755
562 E A -1.2359
563 I A 0.0000
564 A A -0.7943
565 A A -0.7901
566 T A 0.0000
567 N A 0.0000
568 P A -0.3887
569 R A -1.1358
570 D A 0.0000
571 T A -1.5145
572 D A -1.6151
573 M A -0.7646
574 F A -0.1592
575 G A -0.4970
576 Q A -0.9265
577 I A 0.2429
578 A A -0.7193
579 D A -1.9013
580 N A -1.8702
581 N A -2.4729
582 Q A -2.3490
583 N A -1.8729
584 A A -0.8018
585 T A -0.5443
586 T A -0.7684
587 A A -0.4700
588 P A -0.6531
589 I A 0.6543
590 T A -0.0735
591 G A -0.8334
592 N A -1.2911
593 V A -0.6442
594 T A -0.4285
595 A A 0.1607
596 M A 0.5125
597 G A 0.3398
598 V A 1.2113
599 L A 1.1464
600 P A 0.5325
601 G A 0.4891
602 M A 0.0000
603 V A 1.2089
604 W A 0.5559
605 Q A -0.1654
606 N A -0.2796
607 R A 0.0000
608 D A 0.0000
609 I A 0.0000
610 Y A 0.0000
611 Y A 0.0000
612 Q A 0.0000
613 G A 0.0000
614 P A -0.4741
615 I A 0.0000
616 W A 0.0000
617 A A -0.3512
618 K A -0.9625
619 I A -0.9747
620 P A -1.3707
621 H A -1.8618
622 A A -1.6878
623 D A -2.3935
624 G A -1.4190
625 H A -0.6936
626 F A 1.1329
627 H A 0.0145
628 P A -0.0197
629 S A 0.1618
630 P A 0.4771
631 L A 1.3642
632 I A 1.0226
633 G A 0.0000
634 G A 0.0585
635 F A 0.0000
636 G A -0.5455
637 L A 0.0000
638 K A -1.5880
639 H A -1.7863
640 P A 0.0000
641 P A 0.0000
642 P A 0.0000
643 Q A 0.0000
644 I A 0.0000
645 F A 0.0000
646 I A 0.0000
647 K A 0.0000
648 N A 0.0000
649 T A 0.2022
650 P A 0.0167
651 V A 0.3188
652 P A -0.2069
653 A A -0.5130
654 N A -1.2893
655 P A -0.6772
656 A A 0.1340
657 T A 0.1681
658 T A 0.8078
659 F A 1.8562
660 T A 0.7657
661 A A 0.2161
662 A A -0.5141
663 R A -1.6481
664 V A -0.5188
665 D A -1.7878
666 S A -1.0006
667 F A -0.0560
668 I A 0.5505
669 T A 0.2836
670 Q A 0.0000
671 Y A 0.2813
672 S A 0.0000
673 T A 0.3079
674 G A 0.0000
675 Q A -0.1479
676 V A 0.0000
677 A A 0.0000
678 V A 0.0000
679 Q A -1.2049
680 I A 0.0000
681 E A -1.3083
682 W A 0.0000
683 E A -1.5582
684 I A 0.0000
685 E A -2.5446
686 K A -2.8582
687 E A -2.6413
688 R A -3.1381
689 S A -2.2821
690 K A -2.4300
691 R A -1.8171
692 W A -0.3388
693 N A -1.1088
694 P A -0.6180
695 E A -0.1071
696 V A 1.0097
697 Q A -0.2334
698 F A -0.2550
699 T A -0.5902
700 S A -0.9267
701 N A -1.4632
702 Y A -0.9696
703 G A -1.5013
704 N A -2.0253
705 Q A -1.6111
706 S A -0.9355
707 S A -0.3600
708 M A 0.3868
709 L A 0.2253
710 W A 0.1108
711 A A -0.0560
712 P A -0.9139
713 D A -1.2499
714 T A -0.9598
715 T A -1.0878
716 G A -1.6336
717 K A -2.1405
718 Y A -1.0082
719 T A -0.7342
720 E A -0.5624
721 P A 0.0000
722 R A -1.2864
723 V A -0.2749
724 I A 0.0000
725 G A -0.1000
726 S A 0.0000
727 R A 0.0000
728 Y A 0.3168
729 L A 0.0000
730 T A -0.4599
731 N A -1.2496
732 H A -0.9755
733 L A 0.1419
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.0012 4.9668 View CSV PDB
4.5 -0.0351 4.9668 View CSV PDB
5.0 -0.077 4.9668 View CSV PDB
5.5 -0.1196 4.9668 View CSV PDB
6.0 -0.1546 4.9668 View CSV PDB
6.5 -0.1763 4.9668 View CSV PDB
7.0 -0.1855 4.9668 View CSV PDB
7.5 -0.1875 4.9668 View CSV PDB
8.0 -0.1863 5.0028 View CSV PDB
8.5 -0.1819 5.0601 View CSV PDB
9.0 -0.1731 5.1173 View CSV PDB