Project name: 37d7f0977094da

Status: done

Started: 2026-11-12 10:09:05
Settings
Chain sequence(s) MKPDAAREPEPLSPGRGAEAEGRWRERGEADTERQRTRERQEATLAGLAELGYLRQRQELLVRGALRCSGTVGTVAPRSGELRGDAAQRSRLEEKFLEENILLLRRQLNCLRRRDAGLLNQLQELDKQISDLRLDVEKTSEEHLETDSRPSSGFYELSDGASGSLSNSSNSVFSECLSSCHSSTCFCSPLEAALTISDGCPKSADVNPKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFLLCLTGNTLREEEGLGSHASDICIGSELNATKTDNSLPSPSSLWSASHPASSKKMDGYILSLVQKKTHPVRTNKPRTSVNADPTKGLLRNGSVCVRAPSGVPPGSSVNFKNTKQMCLPAGGITSLENGPFSPPKQRSKDSKTDQLESKRLALPESCSAGAAMEPQSKHVPKAAKAASQELTRCQAGLGESMKESNQASAVSPKTSPGRGPVAPAESKALQLPKKMSQKNSLQAVPALDRPALDFKSEGSSQSLEEGHLVKAQFIPGQQAAARPHRAHRNPGVARSATLKARGQAAMEHGLPTVREKPRAAGKKCRFPDDSDTNKKFRKTSAKGRRSGGLQDAGLPGRALGTGGHRAGSRAHAHGREPVVAKPKHKRTDYRRWKSSAEVSYEEALRRARRARREHGAAYRVAVALPYASPYAYVPSDSEYSAECESLFHSTVVDTSEDEQSNYTTNCFGDSESSVSEGDFVGESTTTSDSEESGGLIWSQFVQTLPIQTVTAPDLHTRPTKTFVKIKASHNLKKKILRFRSGSLKLMTTV input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:09:53)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/37d7f0977094da/tmp/folded.pdb                 (00:09:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:44)
Show buried residues

Minimal score value
-5.7984
Maximal score value
3.4832
Average score
-0.9059
Total score value
-704.8002

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.0013
2 K A -1.7317
3 P A -1.6905
4 D A -2.1643
5 A A -1.4190
6 A A -1.6634
7 R A -2.9511
8 E A -3.2757
9 P A -2.2837
10 E A -2.3407
11 P A -0.7363
12 L A 0.7021
13 S A -0.2701
14 P A -0.8247
15 G A -1.6045
16 R A -2.7372
17 G A -2.2921
18 A A -2.4190
19 E A -3.2196
20 A A -2.6392
21 E A -3.4324
22 G A -3.6151
23 R A -4.0366
24 W A -2.9641
25 R A -4.5691
26 E A -5.1042
27 R A -4.8042
28 G A -4.2539
29 E A -4.8222
30 A A -4.3941
31 D A -5.0527
32 T A -4.5250
33 E A -5.2981
34 R A -5.2137
35 Q A -5.5188
36 R A -5.7984
37 T A -5.0649
38 R A -5.7981
39 E A -5.7592
40 R A -4.9238
41 Q A -3.9934
42 E A -3.5728
43 A A -1.9565
44 T A -1.1093
45 L A 0.3617
46 A A -0.0358
47 G A 0.3276
48 L A 1.6905
49 A A 0.6323
50 E A -0.4889
51 L A 0.5424
52 G A -0.3713
53 Y A -0.3004
54 L A -0.4998
55 R A -2.2060
56 Q A -1.7387
57 R A -1.3685
58 Q A -1.6288
59 E A -1.2856
60 L A 0.6319
61 L A 0.9490
62 V A 0.7118
63 R A -0.1171
64 G A 0.3190
65 A A 0.7134
66 L A 0.8902
67 R A -1.0255
68 C A 0.2676
69 S A 0.1785
70 G A -0.1685
71 T A 0.5540
72 V A 1.6827
73 G A 0.5527
74 T A 0.8984
75 V A 1.6057
76 A A 0.4533
77 P A -0.8981
78 R A -2.1217
79 S A -1.7433
80 G A -2.0268
81 E A -2.8293
82 L A -1.3315
83 R A -2.5570
84 G A -2.6097
85 D A -3.1235
86 A A -2.1885
87 A A -2.2497
88 Q A -3.1675
89 R A -3.4673
90 S A -2.9955
91 R A -3.5625
92 L A -2.0455
93 E A -3.3163
94 E A -4.0199
95 K A -3.3610
96 F A -1.0135
97 L A -1.2649
98 E A -2.3204
99 E A -2.2688
100 N A -1.0137
101 I A -0.2503
102 L A -0.3201
103 L A 0.0356
104 L A 0.2763
105 R A -1.5137
106 R A -1.9823
107 Q A -1.0790
108 L A -0.6373
109 N A -2.4916
110 C A -1.9289
111 L A -1.8812
112 R A -3.3725
113 R A -3.6136
114 R A -3.2826
115 D A -3.0084
116 A A -2.1394
117 G A -1.9615
118 L A -0.8704
119 L A -0.7242
120 N A -1.8234
121 Q A -1.7455
122 L A -0.7603
123 Q A -2.3135
124 E A -2.4116
125 L A -1.4248
126 D A -2.7087
127 K A -3.0472
128 Q A -2.0067
129 I A -0.8597
130 S A -1.8410
131 D A -2.0768
132 L A -0.2747
133 R A -1.1151
134 L A 0.0566
135 D A -1.7475
136 V A -0.2761
137 E A -2.3756
138 K A -2.7180
139 T A -1.9014
140 S A -2.2207
141 E A -3.3572
142 E A -2.8801
143 H A -1.9569
144 L A -0.6456
145 E A -1.7684
146 T A -1.8398
147 D A -2.6548
148 S A -2.0404
149 R A -2.5483
150 P A -1.6634
151 S A -0.7213
152 S A -0.1707
153 G A 0.5622
154 F A 1.8461
155 Y A 1.6165
156 E A -0.0622
157 L A 0.3516
158 S A -0.7733
159 D A -1.7651
160 G A -1.3067
161 A A -0.8142
162 S A -0.6396
163 G A -0.3454
164 S A 0.0362
165 L A 0.8432
166 S A -0.2995
167 N A -1.2911
168 S A -1.1694
169 S A -1.0932
170 N A -1.2630
171 S A 0.3403
172 V A 2.2342
173 F A 2.2829
174 S A 0.5510
175 E A -0.7088
176 C A 0.6721
177 L A 1.3087
178 S A 0.4947
179 S A 0.2115
180 C A 0.2047
181 H A -0.8585
182 S A -0.5741
183 S A -0.1745
184 T A 0.7454
185 C A 1.7135
186 F A 2.5230
187 C A 1.8818
188 S A 0.8354
189 P A 0.3452
190 L A 0.5899
191 E A -0.9317
192 A A -0.0025
193 A A 0.5301
194 L A 1.7541
195 T A 1.4281
196 I A 1.8018
197 S A 0.1603
198 D A -1.5529
199 G A -1.2849
200 C A -0.5385
201 P A -1.0601
202 K A -1.9628
203 S A -1.3304
204 A A -1.2533
205 D A -2.0318
206 V A -1.1069
207 N A -1.7543
208 P A -1.5096
209 K A -1.6115
210 Y A -0.0382
211 Q A -0.9581
212 C A 0.5307
213 D A 0.8973
214 L A 1.6734
215 V A 1.6671
216 S A -0.3751
217 K A -2.1006
218 N A -2.5813
219 G A -1.5030
220 N A -1.8101
221 D A -0.5302
222 V A 1.7729
223 Y A 1.4919
224 R A -0.5521
225 Y A 0.2154
226 P A 0.0415
227 S A 0.6756
228 P A 0.8034
229 L A 1.8012
230 H A 0.7153
231 A A 1.0624
232 V A 1.9578
233 A A 1.5975
234 V A 1.7686
235 Q A 0.5073
236 S A 1.0491
237 P A 1.3449
238 M A 2.6542
239 F A 3.1724
240 L A 3.4832
241 L A 3.3316
242 C A 2.7806
243 L A 2.6888
244 T A 1.5158
245 G A 0.3525
246 N A -0.7354
247 T A -0.4824
248 L A -0.4570
249 R A -2.8892
250 E A -3.6992
251 E A -3.9212
252 E A -3.3874
253 G A -1.3453
254 L A 0.6716
255 G A -0.3487
256 S A -0.5911
257 H A -1.3914
258 A A -1.0465
259 S A -0.9590
260 D A -0.8626
261 I A 1.9100
262 C A 2.2975
263 I A 2.4637
264 G A 0.3266
265 S A -0.6276
266 E A -1.5557
267 L A -0.0040
268 N A -0.8881
269 A A -0.7190
270 T A -1.2800
271 K A -2.1255
272 T A -2.0719
273 D A -2.8296
274 N A -1.9487
275 S A -0.4808
276 L A 0.9732
277 P A 0.3478
278 S A -0.1886
279 P A -0.1042
280 S A -0.0058
281 S A 0.6238
282 L A 1.8681
283 W A 1.7339
284 S A 0.5661
285 A A 0.0455
286 S A -0.6462
287 H A -1.2520
288 P A -1.3862
289 A A -1.1707
290 S A -1.5553
291 S A -1.7668
292 K A -2.8540
293 K A -2.2464
294 M A -0.5242
295 D A -1.4903
296 G A -0.3984
297 Y A 1.2811
298 I A 1.6583
299 L A 1.5483
300 S A 0.5809
301 L A 0.4678
302 V A 0.6170
303 Q A -1.3698
304 K A -2.5833
305 K A -2.3685
306 T A -1.7481
307 H A -2.0200
308 P A -0.8635
309 V A 0.0587
310 R A -1.8061
311 T A -1.6713
312 N A -2.6851
313 K A -3.2810
314 P A -2.3511
315 R A -2.5395
316 T A -1.0858
317 S A -0.5173
318 V A 0.7352
319 N A -0.9426
320 A A -0.8103
321 D A -1.5005
322 P A -1.3292
323 T A -1.1521
324 K A -1.9946
325 G A -0.7265
326 L A 1.3015
327 L A 0.9751
328 R A -1.6264
329 N A -1.9729
330 G A -1.0969
331 S A 0.2745
332 V A 2.1928
333 C A 1.9166
334 V A 1.6407
335 R A -0.8520
336 A A -0.5860
337 P A -0.8075
338 S A -0.1392
339 G A 0.1636
340 V A 1.3350
341 P A 0.2381
342 P A -0.3241
343 G A -0.7923
344 S A -0.2494
345 S A 0.1128
346 V A 1.3314
347 N A 0.2547
348 F A 0.5850
349 K A -1.5969
350 N A -2.0637
351 T A -2.0772
352 K A -2.3296
353 Q A -1.2732
354 M A 0.6772
355 C A 1.6455
356 L A 1.9832
357 P A 0.7289
358 A A -0.0489
359 G A -0.2956
360 G A 0.3340
361 I A 1.7475
362 T A 1.1802
363 S A 0.4945
364 L A 0.4366
365 E A -1.8361
366 N A -2.1984
367 G A -1.1547
368 P A 0.0710
369 F A 1.5637
370 S A 0.5369
371 P A -0.4780
372 P A -1.4711
373 K A -2.8305
374 Q A -3.0202
375 R A -3.2092
376 S A -2.6555
377 K A -3.1048
378 D A -3.1430
379 S A -2.4269
380 K A -2.5998
381 T A -2.0736
382 D A -2.4120
383 Q A -1.6807
384 L A -0.5473
385 E A -1.9278
386 S A -2.0390
387 K A -2.8323
388 R A -2.0174
389 L A 0.5081
390 A A 1.0740
391 L A 1.2886
392 P A -0.2330
393 E A -1.6090
394 S A -1.0103
395 C A 0.1240
396 S A 0.0766
397 A A -0.1062
398 G A -0.4421
399 A A 0.0864
400 A A 0.1346
401 M A 0.1650
402 E A -1.7209
403 P A -1.6756
404 Q A -2.1940
405 S A -1.8872
406 K A -2.1731
407 H A -1.0752
408 V A 0.4244
409 P A -0.4780
410 K A -1.3748
411 A A -1.1764
412 A A -1.0525
413 K A -1.6178
414 A A -0.7592
415 A A -0.8501
416 S A -1.2259
417 Q A -1.9644
418 E A -1.7433
419 L A -0.1257
420 T A -0.5914
421 R A -1.4684
422 C A -0.8209
423 Q A -1.2281
424 A A -0.2515
425 G A 0.0407
426 L A 0.6662
427 G A -0.5987
428 E A -1.5954
429 S A -0.9426
430 M A -0.5904
431 K A -2.1695
432 E A -2.8067
433 S A -2.2901
434 N A -2.3113
435 Q A -1.8738
436 A A -0.8977
437 S A -0.0592
438 A A 0.8146
439 V A 1.6060
440 S A 0.1382
441 P A -0.8205
442 K A -1.9467
443 T A -1.0832
444 S A -0.8141
445 P A -0.9289
446 G A -1.5883
447 R A -2.3835
448 G A -1.2065
449 P A -0.0780
450 V A 1.5428
451 A A 0.7351
452 P A -0.2470
453 A A -1.0549
454 E A -2.2500
455 S A -1.8840
456 K A -1.8235
457 A A -0.3844
458 L A 0.9675
459 Q A 0.3082
460 L A 0.7506
461 P A -0.7713
462 K A -2.0975
463 K A -2.0922
464 M A -0.4113
465 S A -0.9546
466 Q A -2.1216
467 K A -2.9496
468 N A -2.0943
469 S A -0.7577
470 L A 0.6204
471 Q A -0.1221
472 A A 0.5579
473 V A 1.4401
474 P A 1.0649
475 A A 0.6845
476 L A 0.3220
477 D A -1.9611
478 R A -2.5034
479 P A -1.1686
480 A A -0.0589
481 L A 1.0680
482 D A -0.4285
483 F A 0.5271
484 K A -1.6034
485 S A -1.6231
486 E A -2.5239
487 G A -1.5259
488 S A -1.1498
489 S A -1.0403
490 Q A -1.1213
491 S A -0.3389
492 L A -0.0500
493 E A -2.3241
494 E A -2.9366
495 G A -1.8646
496 H A -0.6889
497 L A 1.5024
498 V A 1.5061
499 K A -0.7766
500 A A -0.5799
501 Q A -0.1637
502 F A 2.2810
503 I A 2.4455
504 P A 0.6517
505 G A -0.9124
506 Q A -2.0347
507 Q A -1.8123
508 A A -0.8441
509 A A -0.5867
510 A A -0.8224
511 R A -2.3592
512 P A -2.1621
513 H A -2.5708
514 R A -2.8385
515 A A -2.0162
516 H A -2.5211
517 R A -2.9978
518 N A -2.6185
519 P A -1.2260
520 G A -0.0512
521 V A 1.1672
522 A A -0.1412
523 R A -1.5666
524 S A -1.1398
525 A A -0.1263
526 T A 0.3260
527 L A 0.6909
528 K A -1.3056
529 A A -1.5801
530 R A -2.6438
531 G A -1.9941
532 Q A -1.8050
533 A A -0.3499
534 A A -0.0310
535 M A -0.0858
536 E A -1.7924
537 H A -1.5565
538 G A -0.6077
539 L A 0.9775
540 P A 0.7986
541 T A 0.6271
542 V A 0.3558
543 R A -2.1563
544 E A -3.1958
545 K A -3.5111
546 P A -2.4866
547 R A -2.3657
548 A A -1.1542
549 A A -1.0680
550 G A -1.8175
551 K A -2.5750
552 K A -2.4950
553 C A -0.9979
554 R A -1.2446
555 F A 0.1944
556 P A -1.1542
557 D A -2.5791
558 D A -2.9728
559 S A -2.5658
560 D A -2.8443
561 T A -2.5405
562 N A -2.8598
563 K A -3.1118
564 K A -2.5981
565 F A -0.6940
566 R A -2.4314
567 K A -2.4374
568 T A -1.4555
569 S A -1.2988
570 A A -1.1024
571 K A -2.5722
572 G A -2.5766
573 R A -3.5713
574 R A -3.3458
575 S A -1.7054
576 G A -1.0773
577 G A -0.3412
578 L A 0.2214
579 Q A -1.5649
580 D A -2.2530
581 A A -0.9557
582 G A -0.1311
583 L A 1.0920
584 P A -0.0829
585 G A -1.1174
586 R A -1.7667
587 A A -0.1326
588 L A 0.9618
589 G A 0.1205
590 T A -0.3695
591 G A -1.0454
592 G A -1.6338
593 H A -2.2055
594 R A -2.4899
595 A A -1.3254
596 G A -1.3539
597 S A -1.2865
598 R A -2.2305
599 A A -1.3918
600 H A -1.5654
601 A A -1.2465
602 H A -2.0267
603 G A -2.1797
604 R A -3.2244
605 E A -2.3993
606 P A -0.2205
607 V A 1.8858
608 V A 1.9698
609 A A 0.2887
610 K A -1.7508
611 P A -2.1072
612 K A -3.3118
613 H A -3.3811
614 K A -3.4938
615 R A -3.3712
616 T A -2.2840
617 D A -2.3425
618 Y A -1.0726
619 R A -2.4422
620 R A -2.2958
621 W A -0.4506
622 K A -1.1705
623 S A -0.5277
624 S A 0.0262
625 A A -0.1320
626 E A -0.4281
627 V A 0.5327
628 S A 0.0009
629 Y A 0.2831
630 E A -1.1171
631 E A -2.0864
632 A A -1.6954
633 L A -1.8361
634 R A -4.1439
635 R A -4.2332
636 A A -3.5697
637 R A -4.8795
638 R A -5.3709
639 A A -4.4068
640 R A -5.1916
641 R A -5.0034
642 E A -4.4658
643 H A -3.3136
644 G A -2.2746
645 A A -1.0632
646 A A -0.1253
647 Y A 0.7189
648 R A -0.0906
649 V A 1.6895
650 A A 1.6766
651 V A 2.3915
652 A A 1.9521
653 L A 2.1924
654 P A 1.4069
655 Y A 1.5937
656 A A 0.6625
657 S A 0.2748
658 P A 0.4425
659 Y A 1.5122
660 A A 1.5967
661 Y A 2.4498
662 V A 2.0319
663 P A 0.5179
664 S A -0.8737
665 D A -2.3047
666 S A -1.7677
667 E A -1.7488
668 Y A 0.2868
669 S A -0.2617
670 A A -0.7903
671 E A -1.8669
672 C A -1.0446
673 E A -1.2891
674 S A -0.1649
675 L A 1.6502
676 F A 1.8274
677 H A 0.3904
678 S A 0.7115
679 T A 0.9733
680 V A 2.0885
681 V A 1.8287
682 D A -0.7533
683 T A -1.1046
684 S A -2.2703
685 E A -3.5518
686 D A -3.9613
687 E A -3.8827
688 Q A -2.9975
689 S A -1.7712
690 N A -1.2465
691 Y A 0.4681
692 T A 0.0035
693 T A -0.0881
694 N A -0.5534
695 C A 0.7339
696 F A 1.2270
697 G A -0.2375
698 D A -1.9781
699 S A -2.0483
700 E A -2.4980
701 S A -0.8314
702 S A 0.1401
703 V A 1.0981
704 S A -0.4967
705 E A -2.1589
706 G A -1.8692
707 D A -1.1334
708 F A 1.7271
709 V A 1.6417
710 G A -0.1356
711 E A -1.7540
712 S A -1.2386
713 T A -0.6194
714 T A -0.2325
715 T A -0.6832
716 S A -1.2594
717 D A -2.4111
718 S A -2.4752
719 E A -3.3273
720 E A -3.1099
721 S A -1.9834
722 G A -0.9048
723 G A 0.1766
724 L A 2.5657
725 I A 3.3275
726 W A 2.4945
727 S A 0.8557
728 Q A 0.3488
729 F A 2.0028
730 V A 1.8535
731 Q A 0.2761
732 T A 0.4455
733 L A 1.5544
734 P A 1.3166
735 I A 1.7603
736 Q A 0.1896
737 T A 0.6476
738 V A 1.6038
739 T A 0.5597
740 A A 0.0154
741 P A -0.5739
742 D A -1.3909
743 L A 0.1202
744 H A -1.1530
745 T A -1.3441
746 R A -2.4378
747 P A -1.7509
748 T A -1.3016
749 K A -1.2795
750 T A 0.2605
751 F A 2.0470
752 V A 2.0277
753 K A 0.2200
754 I A 1.1015
755 K A -1.2321
756 A A -1.2271
757 S A -1.7310
758 H A -2.7150
759 N A -2.5958
760 L A -1.8656
761 K A -2.8887
762 K A -3.5270
763 K A -2.9108
764 I A -1.3244
765 L A -1.5942
766 R A -2.4928
767 F A -0.9631
768 R A -1.7897
769 S A -1.0265
770 G A -0.8837
771 S A -0.2919
772 L A 0.8641
773 K A -0.0289
774 L A 1.6196
775 M A 1.6652
776 T A 1.0681
777 T A 1.2129
778 V A 1.8395
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.7661 5.7229 View CSV PDB
4.5 -0.8536 5.7229 View CSV PDB
5.0 -0.9626 5.7229 View CSV PDB
5.5 -1.0697 5.7229 View CSV PDB
6.0 -1.1509 5.7229 View CSV PDB
6.5 -1.1924 5.7229 View CSV PDB
7.0 -1.1954 5.7229 View CSV PDB
7.5 -1.1721 5.7229 View CSV PDB
8.0 -1.1342 5.7229 View CSV PDB
8.5 -1.0863 5.7229 View CSV PDB
9.0 -1.0276 5.7229 View CSV PDB