Project name: 4b9c713c16c62

Status: done

Started: 2026-10-21 12:58:01
Settings
Chain sequence(s) MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:05)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:05)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:05)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:05)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:15)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:15)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:22:05)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/4b9c713c16c62/tmp/folded.pdb                  (00:22:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:27:33)
Show buried residues

Minimal score value
-6.6496
Maximal score value
1.5882
Average score
-1.1628
Total score value
-620.9593

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.0018
2 K A -2.1434
3 Q A -2.7972
4 E A -3.0172
5 G A -1.7035
6 S A -1.1730
7 A A -1.4361
8 R A -3.2949
9 R A -3.8575
10 R A -3.3612
11 G A -2.2491
12 A A -1.9208
13 D A -2.6417
14 K A -2.8559
15 A A -1.9547
16 K A -2.2571
17 P A -1.3838
18 P A -1.0038
19 P A -0.9489
20 G A -1.0112
21 G A -1.5054
22 G A -1.9370
23 E A -3.1886
24 Q A -3.2106
25 E A -3.0478
26 P A -1.9489
27 P A -1.2169
28 P A -0.8458
29 P A -0.6392
30 P A -0.9781
31 A A -0.8381
32 P A -1.2693
33 Q A -2.1612
34 D A -2.4575
35 V A -1.2725
36 E A -3.0345
37 M A -2.1864
38 K A -3.2754
39 E A -3.6950
40 E A -3.3776
41 A A -2.2765
42 A A -1.7798
43 T A -1.8879
44 G A -1.7475
45 G A -1.2420
46 G A -1.0377
47 S A -1.1201
48 T A -1.0277
49 G A -1.7018
50 E A -2.5243
51 A A -2.3179
52 D A -2.8998
53 G A -2.3337
54 K A -2.3677
55 T A -1.5513
56 A A -0.9538
57 A A -0.8682
58 A A -1.2169
59 A A -1.1471
60 A A -1.3805
61 E A -2.5255
62 H A -2.6830
63 S A -2.2167
64 Q A -2.4471
65 R A -2.6993
66 E A -2.6134
67 L A -1.5171
68 D A 0.0000
69 T A -0.8776
70 V A -0.5632
71 T A 0.0000
72 L A 0.0000
73 E A -2.3116
74 D A -2.0538
75 I A 0.0000
76 K A -2.5388
77 E A -2.9890
78 H A 0.0000
79 V A 0.0000
80 K A -3.0797
81 Q A 0.0000
82 L A 0.0000
83 E A -2.5465
84 K A -3.0116
85 A A 0.0000
86 V A -2.0298
87 S A -1.7840
88 G A -2.3710
89 K A -3.2765
90 E A -2.9070
91 P A -2.3203
92 R A -2.7794
93 F A -2.3673
94 V A 0.0000
95 L A -1.5170
96 R A -2.3870
97 A A 0.0000
98 L A 0.0000
99 R A -2.1760
100 M A -1.1195
101 L A 0.0000
102 P A -1.1073
103 S A -1.2792
104 T A 0.0000
105 S A -1.5467
106 R A -2.7293
107 R A -2.0672
108 L A 0.0000
109 N A -0.6999
110 H A -0.7200
111 Y A 0.2398
112 V A 0.0000
113 L A 0.0000
114 Y A 0.0000
115 K A -0.6573
116 A A 0.0000
117 V A 0.0000
118 Q A -1.1581
119 G A 0.0000
120 F A 0.0000
121 F A 0.0000
122 T A -0.9878
123 S A -1.1679
124 N A -1.9803
125 N A -1.3052
126 A A -0.6291
127 T A -0.3646
128 R A -0.9153
129 D A -0.7920
130 F A 1.0811
131 L A 0.0000
132 L A -0.3730
133 P A -0.3693
134 F A -0.3102
135 L A 0.0000
136 E A -2.3457
137 E A -2.5052
138 P A -1.2834
139 M A -0.8621
140 D A -2.0282
141 T A -1.7686
142 E A -2.4554
143 A A -1.8553
144 D A -2.1876
145 L A -1.2313
146 Q A -1.8715
147 F A -1.6391
148 R A -2.1947
149 P A -1.6299
150 R A -1.2603
151 T A -1.2593
152 G A -1.3928
153 K A -2.0375
154 A A -1.1103
155 A A -1.1704
156 S A -1.0153
157 T A -0.6917
158 P A -0.2737
159 L A -0.0456
160 L A 0.1554
161 P A -0.2150
162 E A 0.0000
163 V A 0.0000
164 E A -0.2813
165 A A 0.0000
166 Y A 0.0000
167 L A 0.0000
168 Q A 0.0000
169 L A 0.0000
170 L A 0.0000
171 V A 0.0000
172 V A 0.0000
173 I A 0.0000
174 F A 0.0000
175 M A 0.0000
176 M A -1.7214
177 N A -2.3162
178 S A -1.9244
179 K A -3.0197
180 R A -3.3867
181 Y A -2.4329
182 K A -2.9426
183 E A -2.6954
184 A A 0.0000
185 Q A -2.0255
186 K A -2.1688
187 I A 0.0000
188 S A 0.0000
189 D A -1.4461
190 D A -1.1071
191 L A 0.0000
192 M A 0.0000
193 Q A -1.7739
194 K A -1.5819
195 I A 0.0000
196 S A -1.2564
197 T A -1.3132
198 Q A -2.0157
199 N A -2.4722
200 R A -2.2651
201 R A -2.6847
202 A A -1.5990
203 L A 0.0000
204 D A 0.0000
205 L A -0.2479
206 V A 0.0000
207 A A 0.0000
208 A A 0.0000
209 K A -0.3034
210 C A 0.0000
211 Y A 0.0000
212 Y A -0.0726
213 Y A -0.2523
214 H A 0.0000
215 A A 0.0000
216 R A -0.8830
217 V A 0.0000
218 Y A 0.0000
219 E A -1.7544
220 F A -0.4879
221 L A -1.3205
222 D A -2.6621
223 K A -2.6134
224 L A 0.0000
225 D A -1.6748
226 V A 0.2826
227 V A 0.0000
228 R A -0.4177
229 S A 0.0502
230 F A 0.5264
231 L A 0.0000
232 H A -0.5834
233 A A -0.5267
234 R A 0.0000
235 L A 0.0000
236 R A -1.6051
237 T A -0.7864
238 A A 0.0000
239 T A -0.3717
240 L A 0.3918
241 R A -1.0949
242 H A -1.0021
243 D A -1.1657
244 A A -1.2822
245 D A -1.0392
246 G A 0.0000
247 Q A -0.4176
248 A A 0.0000
249 T A 0.0000
250 L A 0.0000
251 L A 0.0000
252 N A 0.0000
253 L A 0.0000
254 L A 0.0000
255 L A 0.0000
256 R A -1.3971
257 N A 0.0000
258 Y A 0.0000
259 L A -0.5160
260 H A -1.0812
261 Y A -0.2073
262 S A -0.2870
263 L A -0.1288
264 Y A -1.1612
265 D A -2.5991
266 Q A -1.9741
267 A A 0.0000
268 E A -2.6303
269 K A -2.9589
270 L A 0.0000
271 V A -1.0834
272 S A -1.3148
273 K A -1.7879
274 S A -0.2267
275 V A 1.2114
276 F A 0.2693
277 P A -0.9549
278 E A -2.3016
279 Q A -2.3437
280 A A 0.0000
281 N A -1.7559
282 N A -2.1429
283 N A -1.6286
284 E A -1.2092
285 W A -1.3637
286 A A 0.0000
287 R A -1.0123
288 Y A 0.0000
289 L A -0.4640
290 Y A 0.0000
291 Y A 0.0000
292 T A 0.0000
293 G A 0.0000
294 R A -0.6602
295 I A 0.0000
296 K A -1.3628
297 A A 0.0000
298 I A -0.1883
299 Q A -1.2481
300 L A 0.0654
301 E A -1.5290
302 Y A -1.0359
303 S A -1.3689
304 E A -2.1652
305 A A 0.0000
306 R A -1.9942
307 R A -2.5361
308 T A 0.0000
309 M A 0.0000
310 T A -1.6433
311 N A -1.9581
312 A A 0.0000
313 L A -1.5319
314 R A -2.5516
315 K A -2.3431
316 A A 0.0000
317 P A -1.4677
318 Q A -1.8704
319 H A -1.3090
320 T A -0.4614
321 A A 0.2204
322 V A 0.9174
323 G A 0.3804
324 F A 0.2853
325 K A -0.1593
326 Q A -0.2507
327 T A -0.1734
328 V A 0.0000
329 H A 0.0000
330 K A -0.3370
331 L A 0.0000
332 L A 0.0000
333 I A 0.0000
334 V A 0.0000
335 V A 0.0000
336 E A -0.3147
337 L A 0.0000
338 L A 0.0000
339 L A -0.1052
340 G A -0.5294
341 E A -0.9969
342 I A -0.7171
343 P A 0.0000
344 D A -2.5375
345 R A -2.5035
346 L A -1.2176
347 Q A -1.7760
348 F A 0.0000
349 R A -2.9951
350 Q A -2.3126
351 P A -2.0602
352 S A -1.4428
353 L A 0.0000
354 K A -3.1951
355 R A -2.6742
356 S A -1.4732
357 L A 0.0000
358 M A -0.1606
359 P A 0.0000
360 Y A 0.0000
361 F A 0.2511
362 L A 0.3632
363 L A 0.0000
364 T A 0.0000
365 Q A -0.6791
366 A A 0.0000
367 V A 0.0000
368 R A -1.1401
369 T A -0.7951
370 G A 0.0000
371 N A -1.3951
372 L A -1.0700
373 A A -0.9735
374 K A -1.5548
375 F A 0.0000
376 N A -1.8324
377 Q A -2.5080
378 V A 0.0000
379 L A -1.6290
380 D A -3.1174
381 Q A -2.7604
382 F A -2.0768
383 G A -2.4693
384 E A -3.2214
385 K A -2.6026
386 F A 0.0000
387 Q A -2.2931
388 A A -1.6936
389 D A -1.5022
390 G A -1.3283
391 T A 0.0000
392 Y A -0.0374
393 T A 0.4468
394 L A 0.0000
395 I A 0.0000
396 I A 1.1006
397 R A -0.5054
398 L A 0.0000
399 R A -1.6845
400 H A -1.6101
401 N A 0.0000
402 V A 0.0000
403 I A -0.6395
404 K A -1.1237
405 T A 0.0000
406 G A 0.0000
407 V A 0.0000
408 R A -0.0992
409 M A 0.7361
410 I A 0.0000
411 S A 0.0404
412 L A 1.5738
413 S A 0.7239
414 Y A 0.4270
415 S A -1.3338
416 R A -2.0973
417 I A -1.0275
418 S A -1.2524
419 L A 0.0000
420 A A -1.9004
421 D A -2.4994
422 I A 0.0000
423 A A 0.0000
424 Q A -3.2064
425 K A -3.0755
426 L A 0.0000
427 Q A -2.6373
428 L A -2.2519
429 D A -2.7096
430 S A -2.3187
431 P A -2.1179
432 E A -2.4575
433 D A -1.9373
434 A A 0.0000
435 E A -1.0491
436 F A 0.1177
437 I A -0.5765
438 V A 0.0000
439 A A -0.9678
440 K A -2.3403
441 A A 0.0000
442 I A -1.8398
443 R A -3.3643
444 D A -3.1808
445 G A -2.2180
446 V A -1.5093
447 I A 0.0000
448 E A -2.7581
449 A A -2.1007
450 S A -1.2960
451 I A -1.0461
452 N A -1.9154
453 H A -2.5478
454 E A -3.1867
455 K A -2.9692
456 G A -2.1972
457 Y A -1.7605
458 V A 0.0000
459 Q A -2.3287
460 S A -2.1994
461 K A -3.0523
462 E A -2.0546
463 M A 0.3924
464 I A 1.4316
465 D A 0.2146
466 I A 0.9656
467 Y A 0.7071
468 S A -0.0655
469 T A -0.7640
470 R A -2.2478
471 E A -1.7795
472 P A -0.5977
473 Q A -1.1215
474 L A -0.3792
475 A A -0.4875
476 F A 0.6528
477 H A -0.6293
478 Q A -0.9729
479 R A -0.7329
480 I A 0.8546
481 S A 0.5717
482 F A 1.5784
483 C A 1.4836
484 L A 1.5882
485 D A 0.3484
486 I A 1.3303
487 H A 0.0260
488 N A -0.2441
489 M A 0.3434
490 S A 0.2079
491 V A -0.1318
492 K A -0.6399
493 A A 0.2269
494 M A 0.6446
495 R A -0.6287
496 F A 0.7313
497 P A -0.1061
498 P A -1.0539
499 K A -2.1719
500 S A -1.8626
501 Y A -0.9344
502 N A -2.3594
503 K A -2.9789
504 D A -2.3759
505 L A -1.1023
506 E A -2.4577
507 S A -2.8381
508 A A -2.5849
509 E A -4.8878
510 E A -5.5173
511 R A -5.8556
512 R A -6.6496
513 E A -6.4401
514 R A -6.2538
515 E A -5.7498
516 Q A -4.8382
517 Q A -4.2086
518 D A -3.6271
519 L A -1.6338
520 E A -2.2087
521 F A -0.5731
522 A A -0.8606
523 K A -2.6477
524 E A -3.0269
525 M A -1.7731
526 A A -3.1513
527 E A -4.7529
528 D A -5.0078
529 D A -4.5528
530 D A -4.1197
531 D A -3.7130
532 S A -1.8048
533 F A 0.6148
534 P A 0.3572
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.9638 4.7129 View CSV PDB
4.5 -1.0629 4.7129 View CSV PDB
5.0 -1.1878 4.7129 View CSV PDB
5.5 -1.3145 4.7129 View CSV PDB
6.0 -1.4196 4.7129 View CSV PDB
6.5 -1.4875 4.7129 View CSV PDB
7.0 -1.5163 4.7129 View CSV PDB
7.5 -1.5168 4.7129 View CSV PDB
8.0 -1.5016 4.7129 View CSV PDB
8.5 -1.4752 4.7129 View CSV PDB
9.0 -1.4365 4.7129 View CSV PDB