Project name: 4f5e49b1117142

Status: done

Started: 2026-11-12 09:48:32
Settings
Chain sequence(s) MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAAQSKVTATQDSTNLRCIFCGPTLPRQNSQLPAQVQNGPSQEEMEIQRRQLQEQQRQKELERERMERERLERERLERERLERERLEQEQLERQRQEREHVERLERERLERLERERQDRERERERLEQLEREQVEWERERRMSNAAPSSDSSLYSAPLPEYSSCQPPSAPPPSYAKVISAPVSDAAPDYAVVTALPPTSTPPTPPLRHSATRFATSLGSAFHPVLPHYATVPRPLNRNSRPSSPVNTPSSQPPAAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPVCVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPPPPPPPPPPPPPPPPPLPPLASLSHCGSQASPPPGTPLASTPSSKPSVLPSPSAAAPASVETPLNPELGDSSASEPGLQAASQPAETPAPQGHVLGPPAPPPPPPLPSGPAYASALPPPPGPPPPPPLPSAGPPPPPPPPPPLPNQVPPPPPPPPAPPLPASGIFSGSMSEDNRPLTGLAAAIAGAKLRKVSRVEDGSFPSGGNTVSVNLASSKTDSGRGNGPLPLGGSGLMEEMSALLARRRRIAEKGSTIETEQKEDRSEDAEPVTSKAASTSTPEPTRKPWERTNTMNGSKSPVISRPKSTPSSQPSANGVQTEGLDYDRLKQDILDEMRKELAKLKEELIDAIRQELSKSNTA input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:14)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:14)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:32:39)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/4f5e49b1117142/tmp/folded.pdb                 (00:32:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:47:17)
Show buried residues

Minimal score value
-7.3636
Maximal score value
3.0797
Average score
-1.1019
Total score value
-884.8163

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3390
2 S A -0.5347
3 E A -1.3678
4 Q A -1.4107
5 S A -0.7797
6 I A -0.0848
7 C A 0.0000
8 Q A -1.4866
9 A A 0.0000
10 R A -2.2130
11 A A 0.0000
12 A A -0.3828
13 V A 0.0000
14 M A 0.1124
15 V A -0.1814
16 Y A -1.2593
17 D A -2.2312
18 D A -3.1067
19 A A -2.2519
20 N A -3.0484
21 K A -3.6217
22 K A -2.8849
23 W A -0.8394
24 V A -0.1906
25 P A 0.1429
26 A A 0.0000
27 G A -0.6809
28 G A -0.6547
29 S A -0.3831
30 T A -0.1254
31 G A 0.0617
32 F A -0.0376
33 S A 0.0000
34 R A -2.3660
35 V A 0.0000
36 H A -1.4274
37 I A 0.0000
38 Y A -0.6172
39 H A -1.0849
40 H A -1.3503
41 T A -1.0910
42 G A -1.1362
43 N A -1.5970
44 N A -1.1057
45 T A -1.0730
46 F A 0.0000
47 R A -0.8360
48 V A 0.0000
49 V A -0.8079
50 G A 0.0000
51 R A -2.2854
52 K A 0.0000
53 I A -1.4443
54 Q A -2.3830
55 D A -3.0140
56 H A -2.7550
57 Q A -1.9655
58 V A -0.5266
59 V A -0.5914
60 I A 0.0000
61 N A -1.1607
62 C A 0.0000
63 A A -0.6740
64 I A 0.0000
65 P A -1.5569
66 K A -2.9982
67 G A -2.1803
68 L A 0.0000
69 K A -2.7113
70 Y A 0.0000
71 N A -2.1582
72 Q A -1.9482
73 A A -1.0019
74 T A -1.1854
75 Q A -2.0177
76 T A -1.7625
77 F A -1.0089
78 H A 0.0000
79 Q A -1.3994
80 W A 0.0000
81 R A -2.8697
82 D A -2.0712
83 A A -1.4959
84 R A -2.3933
85 Q A -1.9816
86 V A 0.0000
87 Y A -0.2692
88 G A 0.0000
89 L A 0.0000
90 N A -1.0737
91 F A 0.0000
92 G A -1.1041
93 S A -2.0744
94 K A -2.8794
95 E A -2.9492
96 D A -2.1628
97 A A 0.0000
98 N A -1.8116
99 V A -0.1694
100 F A 0.0000
101 A A 0.0000
102 S A -0.0483
103 A A -0.1721
104 M A 0.0000
105 M A -0.4591
106 H A -1.2613
107 A A 0.0000
108 L A 0.0000
109 E A -2.5317
110 V A -1.5555
111 L A 0.0000
112 N A -2.9545
113 S A -2.1077
114 Q A -2.3842
115 E A -3.2033
116 A A -1.7863
117 A A -1.5948
118 Q A -2.0029
119 S A -1.6253
120 K A -1.7189
121 V A -0.0001
122 T A -0.7560
123 A A -0.9597
124 T A -1.0832
125 Q A -2.1596
126 D A -2.3789
127 S A -1.7318
128 T A -1.5189
129 N A -1.3890
130 L A 0.2450
131 R A -0.2576
132 C A 1.5489
133 I A 3.0797
134 F A 3.0324
135 C A 1.9532
136 G A 0.4450
137 P A 0.1908
138 T A 0.4172
139 L A 0.9425
140 P A -0.6647
141 R A -2.4770
142 Q A -2.8358
143 N A -2.6339
144 S A -1.3910
145 Q A -0.8663
146 L A 0.6765
147 P A 0.1597
148 A A -0.1683
149 Q A -0.6884
150 V A 0.2288
151 Q A -1.3801
152 N A -1.7230
153 G A -1.4377
154 P A -1.7170
155 S A -2.0704
156 Q A -2.6472
157 E A -3.4036
158 E A -3.1161
159 M A -2.6788
160 E A -3.3693
161 I A -1.9842
162 Q A -2.7745
163 R A -3.8064
164 R A -4.0560
165 Q A -3.4108
166 L A -2.2901
167 Q A -3.9310
168 E A -4.9005
169 Q A -3.6826
170 Q A -3.8836
171 R A -4.6030
172 Q A -3.9695
173 K A -4.2926
174 E A -4.2245
175 L A -3.0678
176 E A -4.1130
177 R A -4.9288
178 E A -4.9282
179 R A -4.9998
180 M A -4.2676
181 E A -5.4386
182 R A -5.9114
183 E A -5.9519
184 R A -5.4829
185 L A -4.3213
186 E A -5.4854
187 R A -5.8114
188 E A -5.4300
189 R A -5.2226
190 L A -4.2498
191 E A -5.3431
192 R A -5.8075
193 E A -5.5100
194 R A -5.3641
195 L A -4.4343
196 E A -5.2464
197 R A -5.6012
198 E A -5.4761
199 R A -4.7243
200 L A -3.0971
201 E A -4.4004
202 Q A -4.3267
203 E A -4.2817
204 Q A -4.0549
205 L A -3.3716
206 E A -5.0561
207 R A -5.6308
208 Q A -4.9148
209 R A -5.3805
210 Q A -5.2513
211 E A -5.2328
212 R A -5.0170
213 E A -4.4408
214 H A -3.6222
215 V A -2.4951
216 E A -4.4966
217 R A -4.5896
218 L A -3.3444
219 E A -4.6413
220 R A -5.1234
221 E A -5.2306
222 R A -5.0612
223 L A -3.2928
224 E A -4.9962
225 R A -5.2862
226 L A -3.7808
227 E A -5.2760
228 R A -5.8833
229 E A -5.4879
230 R A -6.3293
231 Q A -6.3418
232 D A -6.8800
233 R A -7.3636
234 E A -7.2936
235 R A -7.1259
236 E A -7.0343
237 R A -6.3666
238 E A -6.3164
239 R A -5.5734
240 L A -3.7684
241 E A -4.4484
242 Q A -3.9316
243 L A -2.2661
244 E A -3.3079
245 R A -3.3962
246 E A -2.3208
247 Q A -2.1789
248 V A -1.4432
249 E A -2.9949
250 W A -2.3640
251 E A -3.0530
252 R A -3.8349
253 E A -3.9979
254 R A -4.2296
255 R A -4.0876
256 M A -1.9784
257 S A -2.3343
258 N A -2.5758
259 A A -1.2298
260 A A -0.5562
261 P A -0.7109
262 S A -0.8762
263 S A -1.2873
264 D A -2.1268
265 S A -0.8105
266 S A 0.2572
267 L A 2.0245
268 Y A 1.9546
269 S A 0.7686
270 A A 0.4092
271 P A 0.4192
272 L A 0.8608
273 P A -0.1171
274 E A -0.9496
275 Y A 0.2045
276 S A 0.0632
277 S A 0.0839
278 C A -0.0529
279 Q A -1.0718
280 P A -0.8667
281 P A -0.7125
282 S A -0.4351
283 A A -0.2871
284 P A -0.4376
285 P A -0.5465
286 P A -0.3077
287 S A 0.2614
288 Y A 0.8657
289 A A 0.1624
290 K A -0.1331
291 V A 1.8954
292 I A 2.4646
293 S A 1.0803
294 A A 0.5900
295 P A 0.5647
296 V A 1.1669
297 S A -0.3475
298 D A -1.4748
299 A A -0.9024
300 A A -0.8776
301 P A -0.7980
302 D A -1.1756
303 Y A 0.6867
304 A A 1.4561
305 V A 2.9340
306 V A 2.6384
307 T A 1.6207
308 A A 1.0659
309 L A 1.3492
310 P A 0.4656
311 P A -0.0945
312 T A -0.2123
313 S A -0.3884
314 T A -0.3899
315 P A -0.4848
316 P A -0.4904
317 T A -0.4462
318 P A -0.1727
319 P A -0.0479
320 L A 0.1777
321 R A -1.6982
322 H A -1.7693
323 S A -1.1251
324 A A -0.8784
325 T A -0.6164
326 R A -0.9187
327 F A 1.0535
328 A A 0.5963
329 T A 0.5651
330 S A 0.4066
331 L A 1.1567
332 G A 0.1375
333 S A 0.2815
334 A A 0.5821
335 F A 1.4010
336 H A 0.1696
337 P A 0.7573
338 V A 2.2129
339 L A 2.0964
340 P A 0.7766
341 H A -0.0583
342 Y A 0.7189
343 A A 0.7933
344 T A 1.0069
345 V A 1.2177
346 P A -0.2253
347 R A -1.5107
348 P A -0.7838
349 L A -0.0370
350 N A -1.9066
351 R A -2.8013
352 N A -2.8746
353 S A -2.1457
354 R A -2.3900
355 P A -1.4945
356 S A -0.8961
357 S A -0.1009
358 P A 0.1778
359 V A 0.9637
360 N A -0.5405
361 T A -0.5044
362 P A -0.6967
363 S A -0.7051
364 S A -0.9846
365 Q A -1.5157
366 P A -0.9785
367 P A -0.5943
368 A A -0.4283
369 A A -0.8486
370 K A -1.6223
371 S A -0.6496
372 C A 0.5680
373 A A 0.8907
374 W A 1.2172
375 P A 0.2731
376 T A -0.3074
377 S A -0.5479
378 N A -0.4765
379 F A 1.1101
380 S A 0.6310
381 P A 0.6997
382 L A 1.2035
383 P A 0.2697
384 P A -0.1788
385 S A -0.5610
386 P A -0.1451
387 P A 0.7894
388 I A 2.7943
389 M A 2.8854
390 I A 2.8202
391 S A 0.8111
392 S A -0.1134
393 P A -0.6349
394 P A -0.9964
395 G A -1.4723
396 K A -1.9599
397 A A -1.0174
398 T A -0.7311
399 G A -1.0222
400 P A -1.4484
401 R A -1.7740
402 P A -0.0609
403 V A 2.0870
404 L A 2.6545
405 P A 1.8741
406 V A 2.9456
407 C A 2.4562
408 V A 2.4146
409 S A 0.6152
410 S A 0.2697
411 P A 0.3782
412 V A 1.2226
413 P A 0.1600
414 Q A -0.4925
415 M A 0.2599
416 P A -0.2118
417 P A -0.3243
418 S A -0.5500
419 P A -0.4531
420 T A -0.2643
421 A A -0.4190
422 P A -0.9483
423 N A -1.6941
424 G A -1.0226
425 S A -0.2063
426 L A 0.4335
427 D A -0.8002
428 S A 0.0363
429 V A 1.4562
430 T A 1.3033
431 Y A 1.8455
432 P A 1.2226
433 V A 1.7402
434 S A 0.5829
435 P A -0.1379
436 P A -0.4111
437 P A -0.5486
438 T A -0.4466
439 S A -0.5704
440 G A -0.6836
441 P A -0.5084
442 A A -0.2768
443 A A -0.2411
444 P A -0.4579
445 P A -0.5704
446 P A -0.6444
447 P A -0.6850
448 P A -0.6827
449 P A -0.6841
450 P A -0.6850
451 P A -0.6847
452 P A -0.6860
453 P A -0.6872
454 P A -0.6876
455 P A -0.6896
456 P A -0.6898
457 P A -0.6894
458 P A -0.6926
459 P A -0.6928
460 P A -0.4453
461 P A -0.2434
462 P A 0.1763
463 L A 1.3458
464 P A 0.6591
465 P A 0.7144
466 L A 1.7226
467 A A 0.9660
468 S A 0.8001
469 L A 1.3575
470 S A 0.1378
471 H A -0.4809
472 C A -0.0297
473 G A -0.7564
474 S A -1.0017
475 Q A -1.3864
476 A A -0.7290
477 S A -0.7200
478 P A -0.6835
479 P A -0.6719
480 P A -0.7097
481 G A -0.7338
482 T A -0.1627
483 P A 0.3557
484 L A 1.3958
485 A A 0.6506
486 S A 0.0416
487 T A -0.3325
488 P A -0.4782
489 S A -0.7890
490 S A -1.2545
491 K A -2.0401
492 P A -1.0216
493 S A 0.4935
494 V A 2.2892
495 L A 2.1493
496 P A 0.8155
497 S A -0.1784
498 P A -0.5115
499 S A -0.3349
500 A A -0.0744
501 A A 0.0177
502 A A -0.0305
503 P A -0.2275
504 A A 0.2441
505 S A 0.3581
506 V A 0.7996
507 E A -1.1157
508 T A -0.4366
509 P A -0.1682
510 L A 0.7170
511 N A -1.0787
512 P A -1.2147
513 E A -1.5617
514 L A 0.0488
515 G A -0.9840
516 D A -1.8599
517 S A -1.2850
518 S A -0.7014
519 A A -0.5700
520 S A -1.2412
521 E A -1.9789
522 P A -1.1941
523 G A -0.6258
524 L A 0.4591
525 Q A -0.5015
526 A A -0.2540
527 A A -0.4916
528 S A -0.8259
529 Q A -1.4229
530 P A -1.2692
531 A A -1.2037
532 E A -1.9223
533 T A -1.0554
534 P A -0.6757
535 A A -0.4466
536 P A -0.9242
537 Q A -1.7564
538 G A -1.3066
539 H A -0.3146
540 V A 1.8593
541 L A 1.9451
542 G A 0.4197
543 P A -0.3006
544 P A -0.4820
545 A A -0.2809
546 P A -0.4467
547 P A -0.5320
548 P A -0.5920
549 P A -0.5944
550 P A -0.2633
551 P A 0.2537
552 L A 1.2133
553 P A 0.2467
554 S A -0.2773
555 G A -0.7508
556 P A -0.2858
557 A A 0.4735
558 Y A 1.2798
559 A A 0.6170
560 S A 0.4263
561 A A 0.6301
562 L A 1.3215
563 P A 0.2885
564 P A -0.2727
565 P A -0.5204
566 P A -0.7835
567 G A -0.9027
568 P A -0.7749
569 P A -0.7278
570 P A -0.7047
571 P A -0.4567
572 P A -0.2618
573 P A 0.1944
574 L A 1.1677
575 P A 0.2426
576 S A -0.0773
577 A A -0.2311
578 G A -0.7405
579 P A -0.6762
580 P A -0.6941
581 P A -0.7113
582 P A -0.6781
583 P A -0.6828
584 P A -0.6855
585 P A -0.6807
586 P A -0.4575
587 P A -0.2542
588 P A -0.0997
589 L A 0.6810
590 P A -0.3001
591 N A -1.2506
592 Q A -0.8786
593 V A 0.6814
594 P A -0.0475
595 P A -0.3118
596 P A -0.4444
597 P A -0.6872
598 P A -0.6854
599 P A -0.6440
600 P A -0.6061
601 P A -0.5311
602 A A -0.1515
603 P A -0.0785
604 P A 0.3013
605 L A 1.2623
606 P A 0.3635
607 A A 0.2721
608 S A -0.0193
609 G A 1.0674
610 I A 2.5904
611 F A 2.5824
612 S A 0.7763
613 G A 0.0155
614 S A -0.1552
615 M A 0.3078
616 S A -1.1528
617 E A -2.8075
618 D A -3.7673
619 N A -3.2877
620 R A -2.6532
621 P A -1.0477
622 L A 0.8395
623 T A 0.5418
624 G A 0.6523
625 L A 1.8326
626 A A 1.1913
627 A A 1.0059
628 A A 1.3656
629 I A 2.1967
630 A A 0.6292
631 G A -0.1216
632 A A -0.2513
633 K A -1.4276
634 L A -0.5135
635 R A -1.9162
636 K A -1.4496
637 V A 0.0463
638 S A -0.4007
639 R A -1.1254
640 V A -0.4368
641 E A -2.4278
642 D A -2.5870
643 G A -1.4339
644 S A -0.1488
645 F A 1.5519
646 P A 0.6185
647 S A -0.2300
648 G A -1.0969
649 G A -1.4385
650 N A -1.2791
651 T A -0.0913
652 V A 1.7129
653 S A 1.3302
654 V A 1.7608
655 N A 0.3764
656 L A 1.1933
657 A A 0.2412
658 S A -0.4220
659 S A -1.2869
660 K A -2.3019
661 T A -2.1110
662 D A -2.4618
663 S A -1.9028
664 G A -2.0252
665 R A -2.6649
666 G A -2.3776
667 N A -2.1803
668 G A -0.9928
669 P A 0.1318
670 L A 1.5669
671 P A 1.0757
672 L A 1.4662
673 G A 0.0996
674 G A -0.5616
675 S A -0.6474
676 G A -0.3883
677 L A 0.6924
678 M A 0.3554
679 E A -1.6475
680 E A -1.4886
681 M A -0.1834
682 S A -0.7159
683 A A -1.1129
684 L A -1.1060
685 L A -1.3390
686 A A -1.9234
687 R A -2.9130
688 R A -3.3206
689 R A -3.9047
690 R A -3.8024
691 I A -1.6790
692 A A -2.3797
693 E A -3.4008
694 K A -2.8548
695 G A -1.4844
696 S A -1.0143
697 T A -0.0148
698 I A 0.9838
699 E A -1.3163
700 T A -1.6543
701 E A -3.2689
702 Q A -3.6210
703 K A -3.9894
704 E A -4.2917
705 D A -4.2831
706 R A -3.5408
707 S A -2.7078
708 E A -3.2728
709 D A -3.1865
710 A A -2.1418
711 E A -1.9467
712 P A -0.2800
713 V A 1.2343
714 T A 0.2299
715 S A -0.6896
716 K A -1.7731
717 A A -0.9510
718 A A -0.3958
719 S A -0.2503
720 T A -0.2874
721 S A -0.3774
722 T A -0.7938
723 P A -1.2733
724 E A -2.1137
725 P A -1.6938
726 T A -1.8414
727 R A -2.8132
728 K A -2.6537
729 P A -1.3764
730 W A -0.6491
731 E A -2.3093
732 R A -2.7691
733 T A -1.9561
734 N A -1.6231
735 T A -0.5329
736 M A -0.0307
737 N A -1.3144
738 G A -1.4722
739 S A -1.7616
740 K A -2.2394
741 S A -0.5953
742 P A 0.6960
743 V A 2.4915
744 I A 2.2039
745 S A 0.3018
746 R A -2.0179
747 P A -1.9603
748 K A -2.4303
749 S A -1.5162
750 T A -0.7902
751 P A -0.6792
752 S A -0.7140
753 S A -1.0086
754 Q A -1.5385
755 P A -1.0891
756 S A -0.8540
757 A A -0.8274
758 N A -1.2917
759 G A -0.4867
760 V A 0.3429
761 Q A -0.9490
762 T A -0.9806
763 E A -2.3176
764 G A -1.4867
765 L A -0.9270
766 D A -2.3879
767 Y A -1.4138
768 D A -3.0113
769 R A -3.3088
770 L A -1.4180
771 K A -2.8140
772 Q A -3.4791
773 D A -3.2841
774 I A -1.8270
775 L A -1.9916
776 D A -3.3685
777 E A -3.6979
778 M A -2.1487
779 R A -3.1967
780 K A -3.6981
781 E A -3.0587
782 L A -1.4075
783 A A -2.2975
784 K A -2.8401
785 L A -1.3858
786 K A -2.3419
787 E A -2.9425
788 E A -2.5023
789 L A -0.6415
790 I A -1.2440
791 D A -2.3050
792 A A -1.4830
793 I A -0.8117
794 R A -2.4697
795 Q A -2.8693
796 E A -2.8261
797 L A -1.2166
798 S A -2.1585
799 K A -2.9234
800 S A -2.0048
801 N A -1.9583
802 T A -1.1031
803 A A -0.7965
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.3876 6.4452 View CSV PDB
4.5 -0.4792 6.4452 View CSV PDB
5.0 -0.6008 6.4452 View CSV PDB
5.5 -0.7318 6.4452 View CSV PDB
6.0 -0.8492 6.4452 View CSV PDB
6.5 -0.9342 6.4452 View CSV PDB
7.0 -0.9785 6.4452 View CSV PDB
7.5 -0.9902 6.4452 View CSV PDB
8.0 -0.9831 6.4452 View CSV PDB
8.5 -0.9652 6.4452 View CSV PDB
9.0 -0.9383 6.4452 View CSV PDB