Project name: 644440e3deafa0

Status: done

Started: 2026-10-21 12:29:55
Settings
Chain sequence(s) MALSDLVLLRWLRDSRHSRKLILFIVFLALLLDNMLLTVVVPIIPSYLYSIKHEKNSTEIQTTRPELVVSTSESIFSYYNNSTVLITGNATGTLPGGQSHKATSTQHTVANTTVPSDCPSEDRDLLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCIMFISTVMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGKPMGIALGGLAMGVLVGPPFGSVLYEFVGKTAPFLVLAALVLLDGAIQLFVLQPSRVQPESQKGTPLTTLLKDPYILIAAGSICFANMGIAMLEPALPIWMMETMCSRKWQLGVAFLPASISYLIGTNIFGILAHKMGRWLCALLGMVIVGISILCIPFAKNIYGLIAPNFGVGFAIGMVDSSMMPIMGYLVDLRHVSVYGSVYAIADVAFCMGYAIGPSAGGAIAKAIGFPWLMTIIGIIDIAFAPLCFFLRSPPAKEEKMAILMDHNCPIKRKMYTQNNVQSYPIGDDEESESD input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:05)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:05)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:10:07)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/644440e3deafa0/tmp/folded.pdb                 (00:10:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:16:19)
Show buried residues

Minimal score value
-4.0802
Maximal score value
3.352
Average score
-0.0603
Total score value
-31.0719

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.1530
2 A A 1.1253
3 L A 2.1794
4 S A 1.0593
5 D A 0.1589
6 L A 1.6089
7 V A 1.9742
8 L A 1.0853
9 L A 0.0876
10 R A -1.6271
11 W A -0.3838
12 L A 0.0000
13 R A -3.2234
14 D A -3.4524
15 S A -2.8952
16 R A -3.6960
17 H A -2.8118
18 S A -2.3732
19 R A -1.7916
20 K A -2.0498
21 L A 0.0000
22 I A -0.5366
23 L A 0.0000
24 F A 0.6966
25 I A 0.0000
26 V A 0.0000
27 F A 1.0989
28 L A 0.8172
29 A A 0.0000
30 L A 0.0000
31 L A 0.6328
32 L A 0.0000
33 D A 0.0000
34 N A 0.0000
35 M A 0.0000
36 L A 0.0000
37 L A 0.0000
38 T A 0.0000
39 V A 0.0000
40 V A 0.0000
41 V A 0.0000
42 P A 0.0090
43 I A 0.0000
44 I A 0.0000
45 P A 0.0261
46 S A -0.2003
47 Y A -0.0694
48 L A 0.0000
49 Y A -0.3243
50 S A -1.0183
51 I A -1.3769
52 K A -2.2432
53 H A -2.8407
54 E A -3.6391
55 K A -3.6899
56 N A -2.9777
57 S A -2.3630
58 T A -2.3317
59 E A -2.7659
60 I A -0.7530
61 Q A -1.7288
62 T A -1.3687
63 T A -1.3344
64 R A -2.4037
65 P A -1.8451
66 E A -0.9886
67 L A 1.5477
68 V A 2.9060
69 V A 2.5890
70 S A 0.9914
71 T A -0.1128
72 S A -0.3255
73 E A -0.8237
74 S A 1.2643
75 I A 3.0670
76 F A 2.9391
77 S A 1.9002
78 Y A 1.9418
79 Y A 1.2021
80 N A -0.7609
81 N A -1.0534
82 S A -0.0159
83 T A 1.5185
84 V A 3.3520
85 L A 3.2016
86 I A 2.8012
87 T A 0.9410
88 G A -0.3801
89 N A -1.3176
90 A A -0.8230
91 T A -0.6305
92 G A -0.3623
93 T A 0.4003
94 L A 1.2035
95 P A 0.1816
96 G A -0.7652
97 G A -1.3810
98 Q A -2.0312
99 S A -1.8607
100 H A -2.1757
101 K A -2.3657
102 A A -1.1331
103 T A -0.7833
104 S A -0.8783
105 T A -1.0693
106 Q A -1.5602
107 H A -1.1087
108 T A -0.1995
109 V A 1.0179
110 A A 0.1188
111 N A -0.6820
112 T A -0.0067
113 T A 0.2589
114 V A 1.1242
115 P A 0.0396
116 S A -0.6949
117 D A -1.8579
118 C A -1.2581
119 P A -1.5341
120 S A -2.4170
121 E A -2.9902
122 D A -3.8411
123 R A -3.7051
124 D A -2.8960
125 L A -1.9349
126 L A -1.9113
127 N A -2.0016
128 E A -0.6483
129 N A 0.0000
130 V A 0.8671
131 Q A 0.3261
132 V A 0.0000
133 G A 0.0000
134 L A 1.3070
135 L A 0.0000
136 F A 0.0000
137 A A 0.0000
138 S A 0.6543
139 K A 0.0000
140 A A 0.0000
141 T A 1.0371
142 V A 1.1444
143 Q A 0.0000
144 L A 1.5740
145 L A 2.2389
146 T A 1.6634
147 N A 0.0000
148 P A 1.4682
149 F A 2.4548
150 I A 0.0000
151 G A 0.0000
152 L A 0.9271
153 L A 0.5952
154 T A 0.0000
155 N A -1.8279
156 R A -2.4503
157 I A -0.7083
158 G A 0.0000
159 Y A 0.2052
160 P A 0.1003
161 I A 0.4643
162 P A 0.0000
163 M A 0.0000
164 F A 0.7030
165 A A 0.6316
166 G A 0.0000
167 F A 0.0000
168 C A 1.4561
169 I A 1.7276
170 M A 0.0000
171 F A 2.1849
172 I A 2.8018
173 S A 0.0000
174 T A 0.0000
175 V A 2.0480
176 M A 2.1184
177 F A 0.0000
178 A A 0.0000
179 F A 2.0902
180 S A 0.0000
181 S A 0.6503
182 S A 0.7060
183 Y A 0.8909
184 A A 1.2927
185 F A 2.3940
186 L A 0.0000
187 L A 1.6879
188 I A 2.2016
189 A A 0.0000
190 R A 0.0000
191 S A 1.1436
192 L A 1.5783
193 Q A 0.0000
194 G A 0.0000
195 I A 1.1765
196 G A 0.0000
197 S A 0.0000
198 S A 0.0000
199 C A 0.0000
200 S A 0.0000
201 S A 0.0426
202 V A 0.0000
203 A A 0.0000
204 G A 0.0000
205 M A 0.0000
206 G A 0.0000
207 M A 0.0000
208 L A 0.0000
209 A A 0.0000
210 S A -0.0766
211 V A -0.2737
212 Y A 0.0000
213 T A -1.3921
214 D A -2.8491
215 D A -2.6187
216 E A -3.4536
217 E A -3.0806
218 R A 0.0000
219 G A 0.0000
220 K A -1.8785
221 P A 0.0000
222 M A 0.0000
223 G A 0.0000
224 I A 0.4960
225 A A 0.0000
226 L A 0.0000
227 G A 0.0000
228 G A 0.0000
229 L A 0.6596
230 A A 0.0000
231 M A 0.9381
232 G A 0.0000
233 V A 0.8575
234 L A 1.1888
235 V A 1.0524
236 G A 0.0000
237 P A 0.0000
238 P A 0.9395
239 F A 0.7831
240 G A 0.0000
241 S A 0.2224
242 V A 1.3189
243 L A 1.2947
244 Y A 0.2534
245 E A -0.2948
246 F A 2.0628
247 V A 2.1168
248 G A 0.1977
249 K A -1.0152
250 T A 0.3406
251 A A 0.6577
252 P A 0.0000
253 F A 0.0000
254 L A 1.5770
255 V A 1.8189
256 L A 0.0000
257 A A 0.0000
258 A A 1.7340
259 L A 1.7933
260 V A 0.0000
261 L A 2.4350
262 L A 2.2575
263 D A 0.0000
264 G A 0.0000
265 A A 1.4943
266 I A 1.3117
267 Q A 0.0000
268 L A 1.2131
269 F A 0.4483
270 V A 0.0000
271 L A -0.3889
272 Q A -0.9716
273 P A -0.3772
274 S A -1.0029
275 R A -1.5892
276 V A -0.2842
277 Q A -1.7490
278 P A -2.0692
279 E A -3.4705
280 S A -2.5306
281 Q A -2.8751
282 K A -2.9542
283 G A -1.5017
284 T A -0.5144
285 P A -0.1526
286 L A 0.2478
287 T A -0.2461
288 T A -0.4529
289 L A 0.0000
290 L A 0.0748
291 K A -1.2318
292 D A 0.0000
293 P A 0.1608
294 Y A 0.4687
295 I A 0.0000
296 L A 0.7494
297 I A 1.2535
298 A A 0.0000
299 A A 0.0000
300 G A 0.6270
301 S A 0.0000
302 I A 0.0000
303 C A 0.6757
304 F A 0.8915
305 A A 0.0000
306 N A 0.0000
307 M A 0.0000
308 G A 0.0000
309 I A 0.0000
310 A A 0.0000
311 M A 0.0000
312 L A 0.0000
313 E A 0.0000
314 P A 0.0000
315 A A 0.0000
316 L A 0.0000
317 P A 0.0000
318 I A 0.0000
319 W A -0.3882
320 M A 0.0000
321 M A -0.8865
322 E A -2.0264
323 T A -1.0376
324 M A -0.8477
325 C A -0.6297
326 S A -1.1300
327 R A -2.1469
328 K A -2.0611
329 W A -0.2811
330 Q A -0.5884
331 L A 0.0000
332 G A 0.0000
333 V A 0.7553
334 A A 0.0000
335 F A 0.0000
336 L A 1.2409
337 P A 0.0000
338 A A 0.0000
339 S A 0.0000
340 I A 1.7363
341 S A 0.0000
342 Y A 0.0000
343 L A 1.2303
344 I A 1.2401
345 G A 0.0000
346 T A 0.0000
347 N A 0.1029
348 I A 1.1332
349 F A 0.0000
350 G A 0.0000
351 I A -0.1070
352 L A 0.2288
353 A A 0.0000
354 H A -1.5296
355 K A -1.6457
356 M A -0.2978
357 G A -0.7578
358 R A -0.4884
359 W A 0.5614
360 L A 0.6847
361 C A 0.0000
362 A A 0.0000
363 L A 1.4116
364 L A 1.3539
365 G A 0.0000
366 M A 0.0000
367 V A 2.0893
368 I A 2.0641
369 V A 0.0000
370 G A 0.0000
371 I A 2.4479
372 S A 0.0000
373 I A 0.0000
374 L A 1.7546
375 C A 1.2624
376 I A 0.0000
377 P A 0.8151
378 F A 1.3620
379 A A 0.0000
380 K A -1.6684
381 N A -1.3103
382 I A 0.0000
383 Y A 0.8565
384 G A 0.2274
385 L A 0.0000
386 I A 1.5540
387 A A 0.9866
388 P A 1.1435
389 N A 0.0000
390 F A 1.4449
391 G A 1.1063
392 V A 0.0000
393 G A 0.0000
394 F A 1.3059
395 A A 0.0000
396 I A 0.0000
397 G A 0.0000
398 M A 0.0000
399 V A 0.0000
400 D A 0.0000
401 S A 0.0000
402 S A 0.0000
403 M A 0.0000
404 M A 0.0000
405 P A 0.0000
406 I A 0.0000
407 M A 0.0000
408 G A 0.0000
409 Y A -0.3300
410 L A 0.0000
411 V A 0.0000
412 D A -0.4990
413 L A -0.2968
414 R A -1.0472
415 H A -0.2631
416 V A -0.1800
417 S A -0.3229
418 V A -0.3067
419 Y A 0.0000
420 G A 0.0000
421 S A 0.0000
422 V A 0.0000
423 Y A 0.0000
424 A A 0.0000
425 I A 0.0000
426 A A 0.0000
427 D A 0.0000
428 V A 0.8571
429 A A 0.0000
430 F A 0.5982
431 C A 0.0000
432 M A 1.1787
433 G A 0.0000
434 Y A 0.0000
435 A A 0.9173
436 I A 1.2733
437 G A 0.0000
438 P A 0.0000
439 S A 0.8160
440 A A 0.5336
441 G A 0.0000
442 G A 0.0000
443 A A 0.0829
444 I A 0.6276
445 A A 0.0951
446 K A -1.0403
447 A A 0.2636
448 I A 1.4611
449 G A 0.5298
450 F A 0.0000
451 P A 1.0036
452 W A 1.7093
453 L A 0.0000
454 M A 0.0000
455 T A 1.5271
456 I A 1.7659
457 I A 0.0000
458 G A 0.0000
459 I A 2.9132
460 I A 2.2329
461 D A 0.0000
462 I A 2.2047
463 A A 1.3308
464 F A 1.2039
465 A A 0.0000
466 P A 1.2241
467 L A 1.7216
468 C A 0.0000
469 F A 2.2042
470 F A 2.2447
471 L A 0.0000
472 R A -0.8030
473 S A -0.4791
474 P A -0.3614
475 P A -0.9676
476 A A -1.2872
477 K A -2.5392
478 E A -2.7695
479 E A -2.3339
480 K A -1.0544
481 M A -0.3099
482 A A -0.0849
483 I A 1.0792
484 L A 1.1822
485 M A 0.6959
486 D A -0.6542
487 H A -0.5626
488 N A -0.8677
489 C A -0.1630
490 P A -0.3775
491 I A -0.0204
492 K A -1.9429
493 R A -2.5261
494 K A -1.9650
495 M A -0.1037
496 Y A 0.5859
497 T A -0.4592
498 Q A -1.4230
499 N A -1.9538
500 N A -1.6243
501 V A 0.0798
502 Q A -0.4613
503 S A 0.1613
504 Y A 1.2626
505 P A 1.3060
506 I A 1.5426
507 G A -0.7735
508 D A -2.8334
509 D A -4.0620
510 E A -4.0802
511 E A -3.5849
512 S A -2.6285
513 E A -2.8372
514 S A -2.0093
515 D A -2.2732
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 0.2193 5.2654 View CSV PDB
4.5 0.1775 5.2654 View CSV PDB
5.0 0.1251 5.2654 View CSV PDB
5.5 0.0734 5.2654 View CSV PDB
6.0 0.0342 5.2654 View CSV PDB
6.5 0.014 5.2654 View CSV PDB
7.0 0.0116 5.2654 View CSV PDB
7.5 0.0215 5.2654 View CSV PDB
8.0 0.0383 5.2654 View CSV PDB
8.5 0.0599 5.2654 View CSV PDB
9.0 0.0866 5.2654 View CSV PDB