Project name: 6da658819ae2fd

Status: done

Started: 2026-11-11 10:03:45
Settings
Chain sequence(s) MQWIRGGSGMLITGDSIVSAEAVWDHVTMANRGVAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKRQAAMTVRKASKQKGRVGEEENQSLELKRACEVLQRLWSPGKKS input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:10:25)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/6da658819ae2fd/tmp/folded.pdb                 (00:10:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:54)
Show buried residues

Minimal score value
-4.6578
Maximal score value
1.9058
Average score
-1.1939
Total score value
-588.5872

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7630
2 Q A -0.2545
3 W A 0.4233
4 I A -0.7670
5 R A -1.8658
6 G A -1.2062
7 G A -1.2602
8 S A -0.8255
9 G A -0.7808
10 M A 0.1220
11 L A 0.3089
12 I A 0.1702
13 T A -0.1701
14 G A -0.8655
15 D A -1.6212
16 S A -0.0422
17 I A 0.8006
18 V A 0.0000
19 S A 0.0000
20 A A 0.0000
21 E A -0.2874
22 A A 0.0000
23 V A 0.0000
24 W A -0.6108
25 D A -1.0849
26 H A 0.1293
27 V A 1.5014
28 T A 0.8725
29 M A 0.8573
30 A A -0.3955
31 N A -1.8363
32 R A -2.5720
33 G A -1.0425
34 V A 0.0000
35 A A -0.2496
36 F A 0.0000
37 K A -1.8206
38 A A -1.1325
39 G A -0.8746
40 D A -0.9409
41 V A 0.1592
42 I A 0.0000
43 K A -1.2199
44 V A 0.0000
45 L A -0.2846
46 D A -0.7905
47 A A 0.0000
48 S A -1.5034
49 N A -2.0926
50 K A -2.8118
51 D A -2.2234
52 W A -0.7120
53 W A 0.0000
54 W A -0.5062
55 G A 0.0000
56 Q A -2.3958
57 I A -2.3333
58 D A -3.4109
59 D A -3.7832
60 E A -3.9738
61 E A -3.1080
62 G A 0.0000
63 W A -0.3119
64 F A 0.0000
65 P A 0.0000
66 A A -0.5253
67 S A -0.2356
68 F A 0.1210
69 V A 0.0000
70 R A 0.0000
71 L A 0.0000
72 W A 0.1658
73 V A 0.0690
74 N A 0.0000
75 Q A -1.4641
76 E A -2.6902
77 D A -2.5278
78 G A -1.6521
79 V A -0.7871
80 E A -2.3992
81 E A -2.6000
82 G A -2.0539
83 P A -1.6039
84 S A -1.2994
85 D A -1.6542
86 V A -0.1662
87 Q A -1.7115
88 N A -1.9116
89 G A -1.4991
90 H A -1.3664
91 L A -0.2973
92 D A -1.8919
93 P A -1.7055
94 N A -2.1923
95 S A -1.6031
96 D A -1.3222
97 C A 0.8679
98 L A 1.7941
99 C A 1.5899
100 L A 1.9058
101 G A 0.2414
102 R A -1.5312
103 P A -1.0850
104 L A -0.6912
105 Q A -2.4744
106 N A -2.8377
107 R A -3.1749
108 D A -2.5213
109 Q A -2.6529
110 M A -1.8546
111 R A 0.0000
112 A A 0.0000
113 N A -1.1656
114 V A 0.0000
115 I A 0.0000
116 N A -0.8286
117 E A 0.0000
118 I A 0.0000
119 M A -0.8786
120 S A -1.1489
121 T A -1.2255
122 E A 0.0000
123 R A -2.4999
124 H A -2.3220
125 Y A 0.0000
126 I A -1.5306
127 K A -2.2146
128 H A -1.3459
129 L A 0.0000
130 K A -1.8124
131 D A 0.0000
132 I A 0.0000
133 C A 0.0000
134 E A -1.9154
135 G A 0.0000
136 Y A 0.0000
137 L A 0.0000
138 K A -2.7407
139 Q A -2.4138
140 C A 0.0000
141 R A -3.7234
142 K A -3.8022
143 R A -3.6360
144 R A -4.1608
145 D A -3.2770
146 M A -2.2163
147 F A 0.0000
148 S A -2.9182
149 D A -3.6272
150 E A -3.2879
151 Q A -2.0868
152 L A 0.0000
153 K A -2.7572
154 V A -1.3130
155 I A 0.0000
156 F A 0.0000
157 G A -1.8652
158 N A -1.4996
159 I A 0.0000
160 E A -1.9268
161 D A -2.4743
162 I A 0.0000
163 Y A -1.5926
164 R A -2.3193
165 F A -0.9876
166 Q A 0.0000
167 M A -1.0910
168 G A -0.8755
169 F A 0.0000
170 V A 0.0000
171 R A -2.8068
172 D A -2.2687
173 L A 0.0000
174 E A -2.7873
175 K A -3.0862
176 Q A -2.1167
177 Y A -1.8302
178 N A -2.1771
179 N A -2.7562
180 D A -2.7947
181 D A -2.1702
182 P A -1.7785
183 H A -1.4250
184 L A -0.3688
185 S A 0.0000
186 E A -0.8182
187 I A 0.0000
188 G A 0.0000
189 P A -0.6563
190 C A 0.0000
191 F A 0.0000
192 L A -0.8971
193 E A -2.3239
194 H A -1.8073
195 Q A -1.9667
196 D A -2.2386
197 G A -1.3976
198 F A 0.0000
199 W A -0.5623
200 I A -0.6421
201 Y A 0.0000
202 S A -1.0810
203 E A -1.9777
204 Y A 0.0000
205 C A 0.0000
206 N A -1.5609
207 N A -1.1679
208 H A -0.1668
209 L A 0.9636
210 D A -0.5731
211 A A 0.0000
212 C A 0.1654
213 M A 0.2569
214 E A -0.4741
215 L A 0.0000
216 S A -1.3283
217 K A -2.1242
218 L A 0.0000
219 M A -2.0400
220 K A -2.8645
221 D A -2.6082
222 S A -2.3261
223 R A -2.8618
224 Y A 0.0000
225 Q A -2.5938
226 H A -2.3332
227 F A -1.4472
228 F A 0.0000
229 E A -0.9248
230 A A -0.1019
231 C A 0.0000
232 R A 0.0000
233 L A 1.1074
234 L A 1.3998
235 Q A 0.1505
236 Q A -0.2481
237 M A 0.0000
238 I A 1.3001
239 D A -0.3968
240 I A 0.5744
241 A A -0.1370
242 I A 0.0000
243 D A -0.6655
244 G A -0.2745
245 F A 0.0000
246 L A 0.0000
247 L A 0.2837
248 T A -0.0502
249 P A 0.0000
250 V A 0.0000
251 Q A -0.0580
252 K A 0.0000
253 I A 0.0000
254 C A 0.0000
255 K A -0.4774
256 Y A 0.0000
257 P A 0.0000
258 L A -0.2149
259 Q A 0.0000
260 L A 0.0000
261 A A -0.3883
262 E A 0.0000
263 L A 0.0000
264 L A -0.6380
265 K A -1.6555
266 Y A -1.4675
267 T A 0.0000
268 A A -1.7030
269 Q A -2.3386
270 D A -2.6769
271 H A -1.5350
272 S A -1.0762
273 D A 0.0000
274 Y A -1.3685
275 R A -1.6158
276 Y A 0.2906
277 V A 0.0000
278 A A -0.1650
279 A A -0.0038
280 A A 0.0000
281 L A -0.2830
282 A A -0.5163
283 V A -1.0201
284 M A 0.0000
285 R A -2.6722
286 N A -2.5885
287 V A 0.0000
288 T A -1.8947
289 Q A -2.6167
290 Q A -1.9322
291 I A 0.0000
292 N A -1.9676
293 E A -1.7170
294 R A 0.0000
295 K A -2.1073
296 R A -2.1716
297 R A 0.0000
298 L A -1.6534
299 E A -2.8065
300 N A -2.1346
301 I A 0.0000
302 D A -2.4950
303 K A -2.6072
304 I A 0.0000
305 A A -1.4527
306 Q A -1.7695
307 W A -0.8525
308 Q A -0.6407
309 A A -0.8145
310 S A -0.3365
311 V A 0.0000
312 L A -0.1312
313 D A -1.7645
314 W A -1.8560
315 E A -3.0427
316 G A -2.5223
317 D A -3.5662
318 D A -3.3092
319 I A 0.0000
320 L A 0.0000
321 D A -3.7171
322 R A -2.9622
323 S A 0.0000
324 S A 0.0000
325 E A 0.0000
326 L A 0.6159
327 I A 0.4319
328 Y A -0.1136
329 T A -0.2473
330 G A -0.9824
331 E A -2.2688
332 M A 0.0000
333 A A -1.4255
334 W A 0.0000
335 I A 0.0000
336 Y A -0.7601
337 Q A -1.6664
338 P A -1.1351
339 Y A 0.1126
340 G A -0.9588
341 R A -2.4614
342 N A -2.3812
343 Q A -1.9692
344 Q A -2.3575
345 R A -1.8385
346 V A -1.2291
347 F A 0.0000
348 F A 0.0000
349 L A 0.0000
350 F A 0.0000
351 D A 0.0000
352 H A -1.0453
353 Q A 0.0000
354 M A 0.0000
355 V A 0.0000
356 L A 0.0000
357 C A 0.0000
358 K A -1.4210
359 K A -1.8420
360 D A -0.7535
361 L A 1.0296
362 I A 0.9801
363 R A -2.0194
364 R A -2.8933
365 D A -2.8646
366 I A -1.2914
367 L A -1.0381
368 Y A -0.4263
369 Y A -1.1961
370 K A -1.6755
371 G A -1.2262
372 R A -1.1577
373 I A 0.0000
374 D A -1.3986
375 M A 0.0000
376 D A -1.7967
377 K A -2.5116
378 Y A 0.0000
379 E A -1.6294
380 V A -0.3789
381 I A -0.2718
382 D A -1.7489
383 I A -2.1549
384 E A -3.4941
385 D A -3.9168
386 G A -3.0860
387 R A -3.6606
388 D A 0.0000
389 D A -3.4338
390 D A -3.0680
391 F A 0.0000
392 N A -2.1611
393 V A -1.3450
394 S A -1.9524
395 M A 0.0000
396 K A -3.1716
397 N A -2.1293
398 A A 0.0000
399 F A 0.0000
400 K A -0.3461
401 L A 0.0000
402 H A -2.0408
403 N A 0.0000
404 K A -3.8139
405 E A -3.5026
406 T A -3.0041
407 E A -3.4222
408 E A -3.4882
409 V A 0.0000
410 H A -0.7616
411 L A 0.0000
412 F A 0.0000
413 F A -1.1013
414 A A 0.0000
415 K A -2.7360
416 K A -2.0392
417 L A -0.4878
418 E A -1.7268
419 E A 0.0000
420 K A 0.0000
421 I A -0.6919
422 R A -2.0063
423 W A 0.0000
424 L A 0.0000
425 R A -3.0531
426 A A 0.0000
427 F A 0.0000
428 R A -3.8937
429 E A -3.6358
430 E A 0.0000
431 R A -3.0904
432 K A -3.6153
433 M A 0.0000
434 V A 0.0000
435 Q A -3.5568
436 E A -3.0788
437 D A 0.0000
438 E A -3.5413
439 K A -3.0716
440 I A -1.8527
441 G A -1.9633
442 F A -1.5487
443 E A -2.6127
444 I A 0.0000
445 S A -2.6163
446 E A -3.8565
447 N A -3.4704
448 Q A -2.8337
449 K A -3.3409
450 R A -3.4603
451 Q A -2.8071
452 A A 0.0000
453 A A -1.9243
454 M A -1.3390
455 T A -1.7739
456 V A -1.9721
457 R A -2.9580
458 K A -3.3729
459 A A -2.6440
460 S A -3.2986
461 K A -4.0808
462 Q A -3.6547
463 K A -3.4461
464 G A -3.6070
465 R A -4.1204
466 V A -2.8410
467 G A -3.5844
468 E A -4.6578
469 E A -4.6094
470 E A -4.1583
471 N A -4.1285
472 Q A -3.7957
473 S A -2.7674
474 L A -2.2821
475 E A -3.1475
476 L A -1.0983
477 K A -2.3721
478 R A -2.7480
479 A A -0.9320
480 C A -0.7800
481 E A -2.2213
482 V A 0.1454
483 L A 0.2503
484 Q A -1.0923
485 R A -1.0405
486 L A 1.1642
487 W A 1.0635
488 S A -0.4635
489 P A -0.8501
490 G A -1.9151
491 K A -2.9140
492 K A -2.8211
493 S A -1.5609
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -1.1393 3.333 View CSV PDB
4.5 -1.2444 3.2257 View CSV PDB
5.0 -1.3719 3.1099 View CSV PDB
5.5 -1.501 3.1099 View CSV PDB
6.0 -1.6102 3.1099 View CSV PDB
6.5 -1.6838 3.1099 View CSV PDB
7.0 -1.7188 3.1099 View CSV PDB
7.5 -1.7255 3.1099 View CSV PDB
8.0 -1.7149 3.1099 View CSV PDB
8.5 -1.6895 3.1099 View CSV PDB
9.0 -1.6472 3.1099 View CSV PDB