Project name: 72cc7fa984d884

Status: done

Started: 2026-11-11 09:09:38
Settings
Chain sequence(s) MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGTEKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTPPEKDGFPSGTPALNTKGSETSAVVTEEDDDDEDAAPPVIAPRPDHTKSIYTRSVIDPIPAPVGDSNVDSGAKSSDKQKKKAKMTDEEIMEKLRTIVSIGDPKKKYTRYEKIGQGASGTVFTATDVALGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSYLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMEGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKPLSSLTPLILAAKEAMKSNR input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:16:31)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/72cc7fa984d884/tmp/folded.pdb                 (00:16:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:25:53)
Show buried residues

Minimal score value
-4.8773
Maximal score value
3.2183
Average score
-0.8932
Total score value
-468.0589

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.5620
2 S A -1.0005
3 D A -2.3831
4 N A -2.6476
5 G A -2.3243
6 E A -2.2874
7 L A -1.1026
8 E A -2.8744
9 D A -3.3859
10 K A -2.9723
11 P A -1.8203
12 P A -1.0720
13 A A -0.2808
14 P A -0.2411
15 P A 0.1132
16 V A 0.9617
17 R A -0.6503
18 M A 0.4349
19 S A 0.1274
20 S A 0.1117
21 T A 1.2382
22 I A 2.7768
23 F A 2.7478
24 S A 1.1475
25 T A -0.1293
26 G A -1.1033
27 G A -1.9535
28 K A -3.0520
29 D A -2.6462
30 P A -0.7496
31 L A 1.0070
32 S A 0.2394
33 A A -0.6239
34 N A -1.6517
35 H A -1.5665
36 S A -0.7320
37 L A 0.3847
38 K A -0.9078
39 P A -0.0321
40 L A 1.2275
41 P A 0.4818
42 S A 0.5448
43 V A 1.0078
44 P A -1.0439
45 E A -3.0358
46 E A -3.8234
47 K A -4.1504
48 K A -3.6838
49 P A -3.0643
50 R A -3.5015
51 N A -2.5778
52 K A -1.3234
53 I A 1.8343
54 I A 2.9754
55 S A 2.6871
56 I A 3.2183
57 F A 2.6722
58 S A 0.9082
59 G A -0.5726
60 T A -1.6316
61 E A -2.8689
62 K A -3.0390
63 G A -2.3752
64 S A -2.2992
65 K A -3.6186
66 K A -4.1679
67 K A -4.6144
68 E A -4.8773
69 K A -4.6965
70 E A -4.5919
71 R A -3.7615
72 P A -2.2376
73 E A -1.7988
74 I A 0.6302
75 S A 0.0378
76 P A -0.4628
77 P A -0.2204
78 S A -0.9632
79 D A -1.6483
80 F A -0.1991
81 E A -1.7025
82 H A -1.4052
83 T A -0.4583
84 I A 0.3342
85 H A -0.5021
86 V A 0.0159
87 G A -0.3942
88 F A -0.5341
89 D A -0.5428
90 A A -0.0887
91 V A 1.1839
92 T A -0.0127
93 G A 0.0000
94 E A -1.8499
95 F A -0.8641
96 T A -0.5502
97 G A -0.6187
98 M A -0.8157
99 P A -1.3184
100 E A -2.8107
101 Q A -2.5396
102 W A 0.0000
103 A A -2.0820
104 R A -3.0070
105 L A -1.8204
106 L A 0.0000
107 Q A -2.3167
108 T A -1.5001
109 S A 0.0000
110 N A -1.9910
111 I A 0.0000
112 T A -1.3931
113 K A -2.2988
114 L A -0.5208
115 E A -1.5292
116 Q A -2.1660
117 K A -2.8617
118 K A -2.8233
119 N A -2.0369
120 P A -1.9889
121 Q A -1.7152
122 A A -1.1267
123 V A 0.0000
124 L A -0.4909
125 D A -0.7740
126 V A 0.0000
127 L A 0.0000
128 K A -0.8688
129 F A 0.0000
130 Y A -0.1011
131 D A -0.5827
132 S A -0.4407
133 N A -0.6285
134 T A -0.2526
135 V A 0.4531
136 K A -1.5287
137 Q A -1.6095
138 K A -1.5767
139 Y A -0.1819
140 L A 0.7463
141 S A 0.6799
142 F A 1.7484
143 T A 0.6899
144 P A -0.3879
145 P A -1.8626
146 E A -3.3472
147 K A -3.4329
148 D A -2.9366
149 G A -1.1771
150 F A 0.9401
151 P A 0.3658
152 S A -0.2648
153 G A -0.7141
154 T A -0.4713
155 P A -0.0822
156 A A 0.4227
157 L A 0.8497
158 N A -0.8350
159 T A -1.3687
160 K A -2.2646
161 G A -1.8157
162 S A -1.7331
163 E A -2.1087
164 T A -1.1152
165 S A -0.2174
166 A A 1.1676
167 V A 2.4150
168 V A 2.2270
169 T A -0.1614
170 E A -2.5853
171 E A -3.9762
172 D A -4.6114
173 D A -4.6067
174 D A -4.6702
175 D A -4.7222
176 E A -4.1849
177 D A -3.4173
178 A A -1.6561
179 A A -0.5655
180 P A -0.0835
181 P A 0.6362
182 V A 1.8128
183 I A 1.2582
184 A A 0.6368
185 P A -0.2102
186 R A -1.0456
187 P A -1.5811
188 D A -2.6685
189 H A -2.0415
190 T A -1.4131
191 K A -1.5671
192 S A 0.0000
193 I A 0.9067
194 Y A 0.8332
195 T A -0.2525
196 R A -0.7985
197 S A 0.4628
198 V A 2.0316
199 I A 1.8425
200 D A -0.0376
201 P A 0.5038
202 I A 1.5312
203 P A 0.6244
204 A A 0.6504
205 P A 0.4967
206 V A 1.0056
207 G A -0.5817
208 D A -2.0112
209 S A -1.4606
210 N A -1.2907
211 V A 0.1720
212 D A -1.4292
213 S A -0.9372
214 G A -1.2500
215 A A -1.1006
216 K A -1.9242
217 S A -1.5699
218 S A -2.1312
219 D A -3.2612
220 K A -3.9036
221 Q A -3.9839
222 K A -4.1956
223 K A -4.1814
224 K A -3.4889
225 A A -2.4967
226 K A -2.7812
227 M A -2.1970
228 T A -2.4610
229 D A -3.8333
230 E A -3.7538
231 E A -3.7807
232 I A 0.0000
233 M A -2.9159
234 E A -3.2962
235 K A -2.7211
236 L A 0.0000
237 R A -1.7207
238 T A -0.8975
239 I A -0.2764
240 V A 0.1741
241 S A 0.6130
242 I A 1.6346
243 G A -0.0928
244 D A -1.2139
245 P A 0.0000
246 K A -2.9565
247 K A -2.7366
248 K A -1.4287
249 Y A 0.0000
250 T A -1.6019
251 R A -2.3523
252 Y A -1.5028
253 E A -2.3646
254 K A -2.0430
255 I A -0.0901
256 G A -0.7829
257 Q A -1.4982
258 G A -0.8469
259 A A -0.5536
260 S A -0.9658
261 G A -0.9563
262 T A -0.7528
263 V A -0.4006
264 F A -0.7408
265 T A -1.0467
266 A A 0.0000
267 T A -0.9343
268 D A 0.0000
269 V A 1.1375
270 A A 1.3233
271 L A 1.3591
272 G A 0.1427
273 Q A -0.7837
274 E A -1.9210
275 V A 0.0000
276 A A 0.0000
277 I A 0.0000
278 K A 0.0000
279 Q A -0.4229
280 I A 0.0000
281 N A -1.8009
282 L A 0.0000
283 Q A -2.8367
284 K A -3.0041
285 Q A -2.0658
286 P A -2.0043
287 K A -2.0909
288 K A -1.5902
289 E A -1.3496
290 L A -0.2761
291 I A 0.0000
292 I A 0.0000
293 N A -0.4457
294 E A 0.0000
295 I A 0.0000
296 L A -0.4967
297 V A 0.0000
298 M A 0.0000
299 K A -2.0602
300 E A -2.5715
301 L A -1.9838
302 K A -2.6036
303 N A -1.5118
304 P A -0.9499
305 N A 0.0000
306 I A 0.0000
307 V A 0.0000
308 N A -1.1847
309 F A 0.0000
310 L A 0.1280
311 D A -0.1961
312 S A 0.0000
313 Y A 0.0000
314 L A -0.0861
315 V A -0.3519
316 G A -0.8208
317 D A -1.7957
318 E A -1.4129
319 L A 0.0000
320 F A 0.0000
321 V A 0.0000
322 V A 0.0000
323 M A 0.0000
324 E A -0.5454
325 Y A -0.2579
326 L A 0.0000
327 A A -0.2952
328 G A 0.0000
329 G A -0.2670
330 S A -0.7295
331 L A 0.0000
332 T A -0.9476
333 D A -0.9318
334 V A 0.0000
335 V A 0.0000
336 T A 0.0000
337 E A -0.7853
338 T A 0.0000
339 C A 0.0845
340 M A -0.2033
341 D A -0.9848
342 E A -0.5141
343 A A -0.6096
344 Q A 0.0000
345 I A 0.0000
346 A A 0.0000
347 A A 0.0000
348 V A 0.0000
349 C A 0.0000
350 R A -0.8039
351 E A 0.0000
352 C A 0.0000
353 L A 0.0000
354 Q A -0.9390
355 A A 0.0000
356 L A 0.0000
357 E A -1.3886
358 F A -0.8034
359 L A 0.0000
360 H A -1.0033
361 A A -0.8635
362 N A -1.2243
363 Q A -1.2189
364 V A 0.0000
365 I A 0.0000
366 H A 0.0000
367 R A -0.3323
368 D A -0.6077
369 I A 0.0000
370 K A -0.8080
371 S A 0.0000
372 D A -2.0448
373 N A 0.0000
374 V A 0.0000
375 L A -0.2917
376 L A 0.0000
377 G A 0.0000
378 M A -0.3567
379 E A -1.6973
380 G A 0.0000
381 S A -0.5265
382 V A 0.0000
383 K A -0.3554
384 L A 0.0000
385 T A 0.0000
386 D A -1.1744
387 F A 0.0000
388 G A -0.3108
389 F A -0.0522
390 C A 0.0000
391 A A 0.0000
392 Q A -1.2006
393 I A 0.0000
394 T A -1.8015
395 P A -1.8367
396 E A -2.7689
397 Q A -2.8452
398 S A -2.2803
399 K A -2.7825
400 R A -2.0005
401 S A -1.4262
402 T A -0.7710
403 M A 0.0000
404 V A 0.1655
405 G A 0.1115
406 T A 0.1743
407 P A 0.0000
408 Y A 0.1141
409 W A 0.0560
410 M A 0.0000
411 A A 0.0000
412 P A 0.0000
413 E A 0.0000
414 V A 0.0000
415 V A 0.0000
416 T A -1.1733
417 R A -1.8276
418 K A -2.3741
419 A A -1.7116
420 Y A 0.0000
421 G A 0.0000
422 P A -0.7154
423 K A -0.5085
424 V A 0.0000
425 D A 0.0000
426 I A 0.0000
427 W A 0.0000
428 S A 0.0000
429 L A 0.0000
430 G A 0.0000
431 I A 0.0000
432 M A 0.0000
433 A A 0.0000
434 I A 0.0000
435 E A 0.0000
436 M A 0.0000
437 V A -0.4630
438 E A -0.6909
439 G A 0.0000
440 E A -0.2728
441 P A 0.0000
442 P A -0.5371
443 Y A -0.3604
444 L A -0.3769
445 N A -1.2405
446 E A -1.4831
447 N A -1.1605
448 P A -0.3421
449 L A 0.0000
450 R A -0.8479
451 A A 0.0000
452 L A 0.0000
453 Y A 0.0000
454 L A -0.3229
455 I A 0.0000
456 A A -0.5201
457 T A -0.8886
458 N A -1.4199
459 G A 0.0000
460 T A -0.9290
461 P A -1.3741
462 E A -2.3817
463 L A -2.1718
464 Q A -2.6234
465 N A -3.1596
466 P A -2.7902
467 E A -3.3369
468 K A -3.1707
469 L A 0.0000
470 S A -0.9928
471 P A -0.8603
472 I A 0.0028
473 F A 0.0000
474 R A -1.8140
475 D A -1.8749
476 F A 0.0000
477 L A 0.0000
478 N A -2.2216
479 R A -2.6299
480 C A 0.0000
481 L A 0.0000
482 E A -1.8121
483 M A -1.3196
484 D A -2.6465
485 V A -1.8422
486 E A -3.0033
487 K A -3.1779
488 R A 0.0000
489 G A 0.0000
490 S A -1.8149
491 A A 0.0000
492 K A -2.8149
493 E A -2.8684
494 L A 0.0000
495 L A -1.7889
496 Q A -2.2184
497 H A 0.0000
498 P A -0.7077
499 F A 0.0000
500 L A 0.0000
501 K A -1.5982
502 L A -0.1141
503 A A -0.7307
504 K A -1.0160
505 P A -0.4770
506 L A -0.5108
507 S A -0.8517
508 S A -0.5851
509 L A 0.0000
510 T A -0.1316
511 P A 0.3651
512 L A 0.0000
513 I A 0.0000
514 L A 0.7933
515 A A -0.3465
516 A A 0.0000
517 K A -1.6255
518 E A -2.5334
519 A A -2.0683
520 M A -2.3876
521 K A -3.5303
522 S A -2.7062
523 N A -3.1827
524 R A -3.0290
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.6121 5.3477 View CSV PDB
4.5 -0.6928 5.2772 View CSV PDB
5.0 -0.7917 5.1853 View CSV PDB
5.5 -0.8858 5.0835 View CSV PDB
6.0 -0.951 5.0448 View CSV PDB
6.5 -0.9714 5.0448 View CSV PDB
7.0 -0.9492 5.0448 View CSV PDB
7.5 -0.8995 5.0448 View CSV PDB
8.0 -0.8357 5.0448 View CSV PDB
8.5 -0.7629 5.0448 View CSV PDB
9.0 -0.6812 5.0448 View CSV PDB