Project name: 778d8c596ce1b7

Status: done

Started: 2026-11-11 09:21:05
Settings
Chain sequence(s) MGSNKSKPKDASQRRRSLEPAENVHGAGGAFPASQTPSKPASADGHRGPNAAFVPPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGENL input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:08)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:21:49)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/778d8c596ce1b7/tmp/folded.pdb                 (00:21:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:28:54)
Show buried residues

Minimal score value
-4.0624
Maximal score value
2.7547
Average score
-0.898
Total score value
-481.3055

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7805
2 G A -0.3501
3 S A -1.2256
4 N A -2.3559
5 K A -2.8511
6 S A -2.4000
7 K A -2.6613
8 P A -2.3365
9 K A -3.0766
10 D A -2.6972
11 A A -1.7837
12 S A -1.7417
13 Q A -2.6554
14 R A -3.7552
15 R A -3.9818
16 R A -2.9002
17 S A -1.1208
18 L A 0.1361
19 E A -1.2263
20 P A -1.1785
21 A A -1.6307
22 E A -2.0622
23 N A -1.5048
24 V A 0.1711
25 H A -0.5945
26 G A -0.6754
27 A A -0.7265
28 G A -0.7487
29 G A -0.2614
30 A A 0.6356
31 F A 1.7594
32 P A 0.7182
33 A A -0.0819
34 S A -0.8709
35 Q A -1.3852
36 T A -0.8719
37 P A -0.9661
38 S A -1.2054
39 K A -1.9738
40 P A -1.2426
41 A A -0.5140
42 S A -0.5703
43 A A -1.0016
44 D A -2.2610
45 G A -2.1502
46 H A -2.6352
47 R A -2.7237
48 G A -2.0299
49 P A -1.4819
50 N A -1.4466
51 A A -0.1956
52 A A 1.2234
53 F A 2.7547
54 V A 2.5423
55 P A 0.9770
56 P A 0.2772
57 A A -0.2646
58 A A -0.3218
59 A A -1.0030
60 E A -2.1919
61 P A -1.7032
62 K A -1.1391
63 L A 1.2993
64 F A 1.9772
65 G A 0.7506
66 G A 0.3320
67 F A 0.9056
68 N A -0.8640
69 S A -1.0071
70 S A -1.2408
71 D A -2.0449
72 T A -0.6673
73 V A 0.7177
74 T A -0.3582
75 S A -0.6179
76 P A -1.1350
77 Q A -2.1999
78 R A -2.7165
79 A A -1.3514
80 G A -0.9692
81 P A -0.4452
82 L A 0.4614
83 A A 0.1726
84 G A -0.0750
85 G A 0.3548
86 V A 1.7253
87 T A 0.6851
88 T A -0.1342
89 F A 0.0000
90 V A -1.4576
91 A A 0.0000
92 L A -1.3750
93 Y A -1.8358
94 D A -2.4826
95 Y A 0.0000
96 E A -2.3039
97 S A -1.4192
98 R A -1.4599
99 T A -1.5616
100 E A -1.8874
101 T A -0.9639
102 D A 0.0000
103 L A 0.0000
104 S A -1.4317
105 F A 0.0000
106 K A -3.2633
107 K A -2.8828
108 G A -2.1541
109 E A -2.0359
110 R A -2.1295
111 L A 0.0000
112 Q A 0.3017
113 I A 0.0000
114 V A 1.2550
115 N A -0.3049
116 N A -1.0331
117 T A -1.1943
118 E A -1.7019
119 G A -1.6510
120 D A -1.4669
121 W A 0.0000
122 W A 0.0000
123 L A 0.2688
124 A A 0.0000
125 H A -0.4602
126 S A 0.0000
127 L A 0.0519
128 S A -0.4400
129 T A -0.7117
130 G A -0.8484
131 Q A -1.4030
132 T A -0.4547
133 G A 0.0000
134 Y A 0.0145
135 I A 0.0000
136 P A 0.0000
137 S A 0.0000
138 N A -0.3891
139 Y A 0.0000
140 V A 0.0000
141 A A 0.0000
142 P A -0.9146
143 S A -1.3679
144 D A -1.9145
145 S A -1.0337
146 I A -0.7586
147 Q A -1.0274
148 A A -1.0969
149 E A -1.4941
150 E A -1.8253
151 W A 0.0000
152 Y A -0.7421
153 F A -0.5801
154 G A -0.6598
155 K A -2.1112
156 I A -1.2488
157 T A -1.7712
158 R A -2.0091
159 R A -1.3778
160 E A -0.9122
161 S A 0.0000
162 E A -1.1388
163 R A -0.7049
164 L A -0.2528
165 L A 0.0000
166 L A -0.2577
167 N A -0.7691
168 A A -0.8924
169 E A -2.0733
170 N A -1.2303
171 P A -0.9917
172 R A -1.0945
173 G A 0.0000
174 T A 0.0000
175 F A 0.0000
176 L A 0.0000
177 V A 0.0000
178 R A 0.0000
179 E A -1.9997
180 S A 0.0000
181 E A -2.8129
182 T A -1.6231
183 T A -1.8292
184 K A -2.4166
185 G A -2.1315
186 A A 0.0000
187 Y A -1.5974
188 C A 0.0000
189 L A 0.0000
190 S A 0.0000
191 V A 0.0000
192 S A 0.0000
193 D A 0.0000
194 F A 0.8551
195 D A -0.7022
196 N A -1.5462
197 A A -1.2562
198 K A -1.7761
199 G A -0.6147
200 L A 0.3971
201 N A 0.0178
202 V A 0.0424
203 K A -0.3800
204 H A 0.0000
205 Y A 0.0000
206 K A -1.1640
207 I A 0.0000
208 R A -2.6502
209 K A -3.0191
210 L A -2.0574
211 D A -2.3225
212 S A -1.4514
213 G A -1.5805
214 G A -1.7804
215 F A -1.8745
216 Y A -1.5690
217 I A 0.0000
218 T A 0.0000
219 S A -1.6831
220 R A -2.3827
221 T A -1.4809
222 Q A -2.2149
223 F A -1.4116
224 N A -1.9205
225 S A -1.3730
226 L A 0.0000
227 Q A -1.0296
228 Q A -1.4929
229 L A 0.0000
230 V A 0.0000
231 A A -0.7413
232 Y A -0.8980
233 Y A 0.0000
234 S A -1.4897
235 K A -2.3396
236 H A -2.2057
237 A A -1.6691
238 D A -1.6989
239 G A -1.4035
240 L A 0.0000
241 C A -0.4995
242 H A -0.9855
243 R A -2.0932
244 L A 0.0000
245 T A -0.8046
246 T A -0.2299
247 V A -0.0275
248 C A 0.0000
249 P A -0.7452
250 T A -0.6896
251 S A -1.3180
252 K A -1.9443
253 P A -0.9964
254 Q A -1.2093
255 T A 0.0000
256 Q A -0.9853
257 G A -0.8742
258 L A 0.0000
259 A A 0.0000
260 K A -1.5887
261 D A -2.3488
262 A A -1.4831
263 W A -1.5369
264 E A -2.2773
265 I A 0.0000
266 P A -1.5877
267 R A -2.0708
268 E A -2.6052
269 S A -1.9814
270 L A 0.0000
271 R A -2.7521
272 L A -1.0317
273 E A -1.6236
274 V A -0.1319
275 K A -1.0880
276 L A -0.0957
277 G A -0.6981
278 Q A -1.5012
279 G A -0.8191
280 C A -0.2690
281 F A -0.6344
282 G A -1.0093
283 E A -1.2522
284 V A -0.0691
285 W A -0.3072
286 M A -0.5627
287 G A 0.0000
288 T A -1.9345
289 W A 0.0000
290 N A -2.2083
291 G A -1.7374
292 T A -1.4203
293 T A -1.5428
294 R A -2.1617
295 V A 0.0000
296 A A 0.0000
297 I A 0.0000
298 K A -0.3589
299 T A -0.7476
300 L A 0.0000
301 K A -2.1036
302 P A -1.8371
303 G A -1.5594
304 T A 0.0000
305 M A 0.0000
306 S A -1.3417
307 P A -1.7900
308 E A -2.2642
309 A A -1.3330
310 F A 0.0000
311 L A -1.3542
312 Q A -1.5285
313 E A 0.0000
314 A A 0.0000
315 Q A -1.1130
316 V A -0.4963
317 M A 0.0000
318 K A -1.6401
319 K A -2.0439
320 L A 0.0000
321 R A -1.2295
322 H A -0.9167
323 E A -0.8282
324 K A 0.0000
325 L A 0.0000
326 V A 0.0000
327 Q A -0.7270
328 L A -0.5785
329 Y A 0.0000
330 A A 0.0000
331 V A 0.0000
332 V A 0.0000
333 S A -1.8805
334 E A -2.8738
335 E A -2.4711
336 P A -1.9010
337 I A 0.0000
338 Y A -0.9004
339 I A 0.0000
340 V A 0.0000
341 T A -0.1291
342 E A 0.0000
343 Y A -0.4185
344 M A 0.0000
345 N A -1.6672
346 K A -1.6518
347 G A -0.9037
348 S A -0.7748
349 L A 0.0000
350 L A -1.0731
351 D A -2.4696
352 F A -1.8165
353 L A 0.0000
354 K A -3.2887
355 G A -2.4718
356 E A -2.7029
357 T A -1.5956
358 G A 0.0000
359 K A -2.3530
360 Y A -0.3752
361 L A 0.0000
362 R A -1.7984
363 L A -0.9688
364 P A -0.5285
365 Q A -0.8876
366 L A 0.0000
367 V A 0.0000
368 D A -0.4112
369 M A 0.0000
370 S A 0.0000
371 A A 0.0000
372 Q A 0.0000
373 I A 0.0000
374 A A 0.0000
375 S A -0.4919
376 G A 0.0000
377 M A 0.0000
378 A A 0.0000
379 Y A -0.8945
380 V A 0.0000
381 E A -0.9980
382 R A -1.3648
383 M A -0.6390
384 N A -1.1940
385 Y A -0.2534
386 V A -0.0463
387 H A 0.0000
388 R A -0.7086
389 D A 0.0000
390 L A 0.0000
391 R A -0.3622
392 A A 0.0000
393 A A -0.3489
394 N A 0.0000
395 I A 0.0000
396 L A -0.1765
397 V A 0.0000
398 G A 0.0000
399 E A -2.2026
400 N A -1.0820
401 L A -0.5193
402 V A -0.3851
403 C A 0.0000
404 K A 0.0000
405 V A 0.0000
406 A A 0.0000
407 D A -0.6478
408 F A 0.0000
409 G A 0.0000
410 L A 0.0000
411 A A -1.1427
412 R A -1.9563
413 L A -1.1519
414 I A -1.5232
415 E A -2.6855
416 D A -2.3267
417 N A -2.9354
418 E A -2.9852
419 Y A -1.8673
420 T A -2.0093
421 A A -1.6613
422 R A -2.7855
423 Q A -2.9370
424 G A -2.1193
425 A A -0.9667
426 K A -0.8713
427 F A -0.7053
428 P A 0.0000
429 I A 0.0000
430 K A -0.1596
431 W A -0.0466
432 T A 0.0000
433 A A 0.0000
434 P A 0.0000
435 E A 0.0000
436 A A 0.0000
437 A A 0.0000
438 L A 0.1005
439 Y A 0.4649
440 G A -0.5704
441 R A -1.4780
442 F A -0.7702
443 T A -0.4653
444 I A -0.0802
445 K A -1.1775
446 S A 0.0000
447 D A 0.0000
448 V A 0.0000
449 W A 0.0000
450 S A 0.0000
451 F A 0.0000
452 G A 0.0000
453 I A 0.0000
454 L A 0.0000
455 L A 0.0000
456 T A 0.0000
457 E A 0.0000
458 L A 0.0000
459 T A 0.0000
460 T A -1.0559
461 K A -1.7184
462 G A 0.0000
463 R A -1.3538
464 V A 0.7165
465 P A 0.0000
466 Y A 0.0000
467 P A -0.1420
468 G A -0.2529
469 M A -0.3732
470 V A -0.3676
471 N A -1.4814
472 R A -3.3008
473 E A -3.0451
474 V A 0.0000
475 L A -2.2513
476 D A -3.6620
477 Q A -2.7767
478 V A 0.0000
479 E A -3.0122
480 R A -3.1299
481 G A -2.1608
482 Y A -0.9493
483 R A -0.6283
484 M A 0.0000
485 P A -0.1513
486 C A -0.8450
487 P A -0.7807
488 P A -1.1003
489 E A -2.0974
490 C A 0.0000
491 P A -1.6374
492 E A -2.5607
493 S A -1.5728
494 L A 0.0000
495 H A -1.6192
496 D A -2.2753
497 L A 0.0000
498 M A 0.0000
499 C A -1.1151
500 Q A -1.4959
501 C A 0.0000
502 W A 0.0000
503 R A -3.1023
504 K A -3.9785
505 E A -4.0624
506 P A -3.0301
507 E A -3.6773
508 E A -3.8778
509 R A 0.0000
510 P A -0.9917
511 T A -0.6786
512 F A 0.0000
513 E A -1.0013
514 Y A 0.1660
515 L A 0.0000
516 Q A -0.8229
517 A A -0.7339
518 F A -0.1896
519 L A 0.0000
520 E A -1.4756
521 D A -1.5999
522 Y A -0.1409
523 F A 0.9277
524 T A -0.6064
525 S A -0.7939
526 T A -1.1176
527 E A -2.3818
528 P A -1.8455
529 Q A -2.0128
530 Y A -1.1130
531 Q A -1.4489
532 P A -1.4287
533 G A -1.7727
534 E A -2.7599
535 N A -2.3260
536 L A -1.7262
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.6726 6.0585 View CSV PDB
4.5 -0.7443 6.0585 View CSV PDB
5.0 -0.8332 6.0585 View CSV PDB
5.5 -0.9225 6.0585 View CSV PDB
6.0 -0.9943 6.0585 View CSV PDB
6.5 -1.0346 6.0585 View CSV PDB
7.0 -1.0416 6.0585 View CSV PDB
7.5 -1.0257 6.0585 View CSV PDB
8.0 -0.998 6.0585 View CSV PDB
8.5 -0.9628 6.0585 View CSV PDB
9.0 -0.9207 6.0585 View CSV PDB