Project name: 79d8ba5383af73

Status: done

Started: 2026-10-21 12:36:35
Settings
Chain sequence(s) MEGESYNESTVNGTPVNHQALERHGLWEVITIAVVTAVVSLMTIVGNVLVMISFKVNSQLKTVNNYYLLSLACADLIIGIFSMNLYTTYILMGRWVLGSLACDLWLALDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTPKRAGIMIGLAWLVSFILWAPAILCWQYLVGKRTVPPDECQIQFLSEPTITFGTAIAAFYIPVSVMTILYCRIYRETEKRTKDLADLQGSDSVAEAKKREPAQRTLLRSFFSCPRPSLAQRERNQASWSSSRRSTSTTGKTTQATDLSADWEKAEQVTTCSSYPSSEDEAKPTTDPVFQMVYKSEAKESPGKESNTQETKETVVNTRTENSDYDTPKYFLSPAAAHRLKSQKCVAYKFRLVVKADGTQETNNGCRKVKIMPCSFPVSKDPSTKGPDPNLSHQMTKRKRMVLVKERKAAQTLSAILLAFIITWTPYNIMVLVSTFCDKCVPVTLWHLGYWLCYVNSTINPICYALCNRTFRKTFKLLLLCRWKKKKVEEKLYWQGNSKLP input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:05)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:16:56)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/79d8ba5383af73/tmp/folded.pdb                 (00:16:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:27:02)
Show buried residues

Minimal score value
-4.3845
Maximal score value
3.8248
Average score
-0.4094
Total score value
-217.4032

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.1304
2 E A -2.0948
3 G A -2.1783
4 E A -2.3782
5 S A -1.3337
6 Y A -0.2849
7 N A -1.8532
8 E A -1.9040
9 S A -0.6909
10 T A -0.1544
11 V A 0.9581
12 N A -0.5057
13 G A -0.4308
14 T A -0.1393
15 P A -0.2018
16 V A 0.3843
17 N A -1.3489
18 H A -1.5824
19 Q A -1.8665
20 A A -1.5409
21 L A -1.1652
22 E A -2.6286
23 R A -2.6806
24 H A -1.5358
25 G A -0.4791
26 L A 1.5014
27 W A 1.4363
28 E A -0.3240
29 V A 1.0949
30 I A 2.2594
31 T A 1.6682
32 I A 1.9337
33 A A 2.0740
34 V A 3.1817
35 V A 3.3948
36 T A 0.0000
37 A A 2.2646
38 V A 3.1247
39 V A 2.3966
40 S A 0.0000
41 L A 3.0061
42 M A 2.5179
43 T A 0.0000
44 I A 2.4223
45 V A 2.1002
46 G A 1.6025
47 N A 0.0000
48 V A 1.5803
49 L A 1.1180
50 V A 0.0000
51 M A 0.5858
52 I A 0.3778
53 S A 0.0000
54 F A 0.0000
55 K A -1.5686
56 V A -0.8007
57 N A -1.2003
58 S A -1.5360
59 Q A -1.7231
60 L A 0.0000
61 K A -2.0079
62 T A -0.9113
63 V A -0.7808
64 N A -0.3474
65 N A 0.0000
66 Y A -0.0371
67 Y A 0.0000
68 L A 0.0000
69 L A 0.4916
70 S A 0.0000
71 L A 0.0000
72 A A 0.0000
73 C A 0.7061
74 A A 0.0000
75 D A 0.0000
76 L A 1.3743
77 I A 1.4221
78 I A 0.0000
79 G A 0.0000
80 I A 1.9963
81 F A 1.8648
82 S A 0.0000
83 M A 0.0000
84 N A 0.4080
85 L A 0.7534
86 Y A 0.0000
87 T A 0.5829
88 T A 0.3406
89 Y A 0.1917
90 I A 0.4903
91 L A 0.3422
92 M A 0.1410
93 G A -0.9893
94 R A -1.3221
95 W A 0.0000
96 V A 0.9962
97 L A 1.4905
98 G A 0.5678
99 S A 0.5694
100 L A 1.9470
101 A A 1.5063
102 C A 0.0000
103 D A 0.0000
104 L A 1.8705
105 W A 0.0000
106 L A 0.0000
107 A A 0.0000
108 L A 1.5436
109 D A 0.0000
110 Y A 0.7783
111 V A 1.7048
112 A A 0.0000
113 S A 0.2535
114 N A 0.0000
115 A A 0.0000
116 S A 0.0000
117 V A 0.0000
118 M A 0.6635
119 N A 0.0000
120 L A 0.0000
121 L A 0.6534
122 V A 0.8756
123 I A 0.0000
124 S A 0.0000
125 F A 1.1577
126 D A 0.0000
127 R A 0.0000
128 Y A 0.3738
129 F A 0.3740
130 S A 0.0000
131 I A 0.0000
132 T A -0.7652
133 R A -1.2514
134 P A -0.5330
135 L A 0.5128
136 T A -0.3479
137 Y A -0.7652
138 R A -1.1951
139 A A -0.9565
140 K A -2.0006
141 R A -2.0401
142 T A -1.9510
143 P A -1.5013
144 K A -2.1974
145 R A -2.2887
146 A A 0.0000
147 G A -0.2012
148 I A 1.2725
149 M A 1.1977
150 I A 1.1988
151 G A 1.5617
152 L A 2.9481
153 A A 0.0000
154 W A 2.4539
155 L A 3.3078
156 V A 3.0265
157 S A 0.0000
158 F A 3.8248
159 I A 3.3681
160 L A 2.4629
161 W A 0.0000
162 A A 1.7249
163 P A 1.1021
164 A A 1.0947
165 I A 0.0000
166 L A 1.5271
167 C A 1.6551
168 W A 1.3157
169 Q A 0.6574
170 Y A 1.8691
171 L A 2.3078
172 V A 1.1650
173 G A 0.0256
174 K A -1.3915
175 R A -1.0670
176 T A -0.9012
177 V A -1.1002
178 P A -1.3419
179 P A -1.5060
180 D A -2.3406
181 E A -2.1598
182 C A 0.0000
183 Q A -1.0535
184 I A 0.0000
185 Q A -0.3598
186 F A 0.0000
187 L A 0.1072
188 S A -0.5285
189 E A -0.5754
190 P A 0.1916
191 T A 0.3814
192 I A 0.6182
193 T A 0.0000
194 F A 1.5209
195 G A 0.5532
196 T A 0.6711
197 A A 0.0000
198 I A 1.4738
199 A A 0.9843
200 A A 0.7280
201 F A 0.0000
202 Y A 1.4563
203 I A 2.1059
204 P A 0.0000
205 V A 1.4112
206 S A 1.4204
207 V A 1.8343
208 M A 0.0000
209 T A 1.3308
210 I A 1.9673
211 L A 0.0000
212 Y A 0.4771
213 C A 0.0622
214 R A -1.5491
215 I A 0.0000
216 Y A -0.7858
217 R A -2.8325
218 E A -2.5087
219 T A 0.0000
220 E A -3.2598
221 K A -3.7529
222 R A -3.2170
223 T A -3.0219
224 K A -3.7450
225 D A -3.3469
226 L A 0.0000
227 A A -2.3537
228 D A -2.8875
229 L A -1.3206
230 Q A -1.5681
231 G A -1.1407
232 S A -0.9246
233 D A -1.8108
234 S A -1.2577
235 V A -0.2295
236 A A -1.7877
237 E A -3.4482
238 A A -2.7716
239 K A -3.9130
240 K A -4.3798
241 R A -4.3845
242 E A -4.2493
243 P A -2.7772
244 A A -1.9244
245 Q A -1.9746
246 R A -1.7991
247 T A -0.3810
248 L A 1.1022
249 L A 1.0928
250 R A -0.1349
251 S A 1.0989
252 F A 2.5309
253 F A 2.6334
254 S A 1.4216
255 C A 0.5914
256 P A -0.9459
257 R A -1.8197
258 P A -0.9735
259 S A 0.1153
260 L A 0.9791
261 A A -0.2239
262 Q A -2.2832
263 R A -3.7452
264 E A -4.2644
265 R A -4.0872
266 N A -3.1276
267 Q A -2.1773
268 A A -0.7352
269 S A 0.0751
270 W A 0.9115
271 S A 0.1985
272 S A -0.5521
273 S A -1.5146
274 R A -3.0529
275 R A -3.0215
276 S A -1.5837
277 T A -0.6966
278 S A -0.3605
279 T A -0.3524
280 T A -0.7113
281 G A -1.3335
282 K A -1.9897
283 T A -1.3867
284 T A -1.1030
285 Q A -1.2362
286 A A -0.8516
287 T A -0.8021
288 D A -1.1080
289 L A 0.3077
290 S A -0.1284
291 A A -0.7118
292 D A -1.7793
293 W A -0.9789
294 E A -2.7866
295 K A -3.1744
296 A A -2.1323
297 E A -2.7225
298 Q A -1.4881
299 V A 0.8355
300 T A 0.5346
301 T A 0.5029
302 C A 0.6138
303 S A 0.3843
304 S A 0.3753
305 Y A 1.0438
306 P A -0.0970
307 S A -0.7914
308 S A -1.5231
309 E A -3.3819
310 D A -3.7001
311 E A -3.5216
312 A A -2.3702
313 K A -2.2438
314 P A -1.3430
315 T A -1.0285
316 T A -1.0774
317 D A -1.3562
318 P A -0.0347
319 V A 1.9250
320 F A 2.2672
321 Q A 1.2463
322 M A 1.8738
323 V A 2.1843
324 Y A 1.4253
325 K A -1.0643
326 S A -1.4201
327 E A -2.6976
328 A A -2.2723
329 K A -3.0400
330 E A -2.8029
331 S A -1.8974
332 P A -1.7256
333 G A -1.8131
334 K A -2.9811
335 E A -3.2278
336 S A -2.2766
337 N A -2.0600
338 T A -1.7682
339 Q A -2.5063
340 E A -2.8749
341 T A -2.4871
342 K A -3.0039
343 E A -2.3094
344 T A -0.1528
345 V A 1.9399
346 V A 1.9743
347 N A -0.4678
348 T A -1.2403
349 R A -2.5906
350 T A -2.2893
351 E A -2.9664
352 N A -2.6934
353 S A -2.0284
354 D A -2.0511
355 Y A -0.4977
356 D A -1.9618
357 T A -1.2225
358 P A -0.7994
359 K A -0.6608
360 Y A 1.7365
361 F A 2.7876
362 L A 2.4364
363 S A 1.0069
364 P A 0.0140
365 A A -0.0760
366 A A -0.3993
367 A A -0.8176
368 H A -1.4992
369 R A -1.9161
370 L A -0.5573
371 K A -1.7224
372 S A -1.6087
373 Q A -1.8500
374 K A -1.4330
375 C A 0.6446
376 V A 1.7535
377 A A 1.2711
378 Y A 1.3162
379 K A -0.2577
380 F A 1.1598
381 R A 0.2289
382 L A 2.0211
383 V A 2.6341
384 V A 1.8010
385 K A -0.6191
386 A A -1.1215
387 D A -2.3527
388 G A -1.8484
389 T A -1.7392
390 Q A -2.5737
391 E A -3.0205
392 T A -2.4156
393 N A -2.5109
394 N A -2.3911
395 G A -1.8920
396 C A -1.1133
397 R A -2.3387
398 K A -1.8124
399 V A 0.3430
400 K A -0.2700
401 I A 1.9878
402 M A 1.8369
403 P A 1.2142
404 C A 1.4201
405 S A 1.3115
406 F A 2.2844
407 P A 1.3106
408 V A 1.2792
409 S A -0.4754
410 K A -2.2987
411 D A -2.6273
412 P A -1.8837
413 S A -1.6324
414 T A -1.4662
415 K A -2.4037
416 G A -1.9413
417 P A -1.9066
418 D A -2.7967
419 P A -2.4027
420 N A -2.2440
421 L A -1.2349
422 S A -1.8924
423 H A -2.7772
424 Q A -2.5267
425 M A -2.0138
426 T A 0.0000
427 K A -3.0996
428 R A -3.3544
429 K A -3.0863
430 R A -2.6449
431 M A -1.4359
432 V A -1.0030
433 L A 0.0000
434 V A -1.1951
435 K A -2.3575
436 E A -1.7743
437 R A -2.1972
438 K A -2.9558
439 A A -1.9893
440 A A -1.3684
441 Q A -2.0941
442 T A -0.9091
443 L A 0.0000
444 S A -0.1451
445 A A 0.3352
446 I A 0.0000
447 L A 0.0000
448 L A 1.7658
449 A A 1.5069
450 F A 0.0000
451 I A 1.8333
452 I A 2.5827
453 T A 0.0000
454 W A 1.2514
455 T A 1.3210
456 P A 1.4391
457 Y A 1.3058
458 N A 0.0000
459 I A 1.8777
460 M A 0.0000
461 V A 1.5843
462 L A 2.0220
463 V A 1.8508
464 S A 0.7816
465 T A 1.0000
466 F A 1.9646
467 C A 0.3423
468 D A -1.7718
469 K A -1.8286
470 C A -0.2611
471 V A 0.1440
472 P A 0.2978
473 V A 1.0312
474 T A 0.9659
475 L A 1.5979
476 W A 1.4385
477 H A 1.3056
478 L A 2.1135
479 G A 0.0000
480 Y A 1.0417
481 W A 1.1672
482 L A 1.4037
483 C A 0.0000
484 Y A 0.0000
485 V A 0.8826
486 N A 0.0000
487 S A 0.0000
488 T A 0.0000
489 I A 1.0703
490 N A 0.0000
491 P A 0.0000
492 I A 1.7911
493 C A 0.0000
494 Y A 0.0000
495 A A -0.2783
496 L A 1.2388
497 C A -0.2362
498 N A -1.6373
499 R A -2.7490
500 T A -2.3218
501 F A 0.0000
502 R A -3.0650
503 K A -3.4703
504 T A 0.0000
505 F A 0.0000
506 K A -1.8473
507 L A -1.1687
508 L A 0.2864
509 L A 1.5090
510 L A 0.9626
511 C A 0.2325
512 R A -1.9057
513 W A -1.7613
514 K A -2.9884
515 K A -3.6074
516 K A -3.1548
517 K A -2.4719
518 V A -1.2219
519 E A -2.5094
520 E A -2.0185
521 K A -1.8293
522 L A -0.1369
523 Y A -0.3653
524 W A -1.0890
525 Q A -1.8404
526 G A -1.3773
527 N A -1.6376
528 S A -1.3798
529 K A -1.8738
530 L A -0.0188
531 P A -0.1325
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.3058 6.8792 View CSV PDB
4.5 -0.3631 6.8792 View CSV PDB
5.0 -0.4324 6.8792 View CSV PDB
5.5 -0.4958 6.8792 View CSV PDB
6.0 -0.5329 6.8792 View CSV PDB
6.5 -0.5307 6.8792 View CSV PDB
7.0 -0.4924 6.8792 View CSV PDB
7.5 -0.4316 6.8792 View CSV PDB
8.0 -0.3594 6.8792 View CSV PDB
8.5 -0.2801 6.8792 View CSV PDB
9.0 -0.1943 6.8791 View CSV PDB