Project name: 7b74b4c5cd8e83

Status: done

Started: 2026-11-12 11:48:41
Settings
Chain sequence(s) MEKFLFYLFLIGIAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTMDLHIIKLPHLLNSTNNIHEPDPGSSDISTSTKSGSNASSSNGDTKMSQDKIVVAEASSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLASGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQMQGCSVTLPQSMSKQAMGHEENAQCCKVASDSAIQSSETCSSQDSSTTTSALPPTWTSSAPVSQKQKRKTGTKPSAEPQSEAVTNVESQNTNRNNSTALQLASCPPDSVTEGPTSQRAHTKPNALLTNVDQNVQETQRLESI input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:09:59)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/7b74b4c5cd8e83/tmp/folded.pdb                 (00:09:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:21:48)
Show buried residues

Minimal score value
-4.0806
Maximal score value
5.317
Average score
-0.4717
Total score value
-339.1846

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6833
2 E A -0.5723
3 K A 0.1448
4 F A 2.7684
5 L A 2.8667
6 F A 3.5825
7 Y A 4.0412
8 L A 3.9983
9 F A 4.9644
10 L A 4.5955
11 I A 3.6489
12 G A 3.0173
13 I A 3.3612
14 A A 2.1830
15 V A 1.8567
16 R A -0.4585
17 A A -0.2522
18 Q A -0.6954
19 I A -0.0545
20 C A -0.0897
21 P A 0.0000
22 K A -2.3088
23 R A -2.6939
24 C A -1.1599
25 V A 0.5108
26 C A 0.5437
27 Q A 0.8224
28 I A 1.7794
29 L A 1.8013
30 S A 0.5603
31 P A 0.0663
32 N A -0.2318
33 L A 0.0000
34 A A 0.0000
35 T A 0.0000
36 L A -0.4722
37 C A 0.0000
38 A A -1.7990
39 K A -2.5591
40 K A -1.7303
41 G A -0.5977
42 L A 0.0000
43 L A 2.3416
44 F A 1.5789
45 V A 0.0000
46 P A -0.5566
47 P A -0.9904
48 N A -1.2986
49 I A 0.0000
50 D A 0.0000
51 R A -1.7761
52 R A -2.1219
53 T A 0.0000
54 V A -0.6414
55 E A -1.0333
56 L A 0.0000
57 R A -1.8113
58 L A 0.0000
59 A A 0.0000
60 D A -1.6549
61 N A -0.1385
62 F A 1.7955
63 V A 0.0000
64 T A 0.6173
65 N A 0.1769
66 I A 0.0000
67 K A -1.4705
68 R A -1.9547
69 K A -2.4356
70 D A 0.0000
71 F A 0.0000
72 A A -1.7444
73 N A -2.2168
74 M A 0.0000
75 T A -1.7431
76 S A -1.5952
77 L A 0.0000
78 V A -1.0151
79 D A -1.2096
80 L A 0.0000
81 T A -1.0653
82 L A 0.0000
83 S A 0.0000
84 R A -2.1094
85 N A 0.0000
86 T A -0.1733
87 I A 0.0000
88 S A -0.8995
89 F A 0.1817
90 I A 0.0000
91 T A -0.7245
92 P A -0.8374
93 H A -1.1685
94 A A 0.0000
95 F A 0.0000
96 A A -1.1452
97 D A -1.6606
98 L A 0.0000
99 R A -3.1608
100 N A -2.7975
101 L A 0.0000
102 R A -2.3112
103 A A 0.0000
104 L A 0.0000
105 H A -0.6939
106 L A 0.0000
107 N A -1.1482
108 S A -1.6562
109 N A 0.0000
110 R A -2.5334
111 L A 0.0000
112 T A -1.5083
113 K A -1.6452
114 I A 0.0000
115 T A -0.9896
116 N A -1.5979
117 D A -1.2615
118 M A 0.0000
119 F A 0.0000
120 S A -1.2071
121 G A -1.5727
122 L A 0.0000
123 S A -2.0087
124 N A -2.4799
125 L A 0.0000
126 H A -1.3330
127 H A -1.0875
128 L A 0.0000
129 I A -0.2331
130 L A 0.0000
131 N A -0.7307
132 N A -1.5249
133 N A 0.0000
134 Q A -2.2090
135 L A 0.0000
136 T A -0.9739
137 L A -0.3375
138 I A 0.0000
139 S A -0.5352
140 S A -0.8057
141 T A -1.3942
142 A A 0.0000
143 F A 0.0000
144 D A -2.3955
145 D A -1.9617
146 V A 0.0000
147 F A -0.6057
148 A A -0.7493
149 L A 0.0000
150 E A -0.9655
151 E A -0.9986
152 L A 0.0000
153 D A -0.4679
154 L A 0.0000
155 S A 0.0000
156 Y A -0.4206
157 N A 0.0000
158 N A -1.3707
159 L A 0.0000
160 E A -2.2718
161 T A -1.2154
162 I A 0.0000
163 P A 0.0000
164 W A 0.0000
165 D A -2.6233
166 A A 0.0000
167 V A 0.0000
168 E A -2.1808
169 K A -1.9950
170 M A 0.0000
171 V A -0.3862
172 S A -0.5575
173 L A 0.0000
174 H A -1.3047
175 T A -1.1749
176 L A 0.0000
177 S A -0.6240
178 L A 0.0000
179 D A -0.4393
180 H A -0.4789
181 N A 0.0000
182 M A -1.3783
183 I A 0.0000
184 D A -2.4779
185 N A -2.4631
186 I A 0.0000
187 P A -1.4711
188 K A -2.0853
189 G A -1.7513
190 T A 0.0000
191 F A 0.0000
192 S A -1.3493
193 H A -1.7849
194 L A 0.0000
195 H A -1.7829
196 K A -1.9332
197 M A 0.0000
198 T A -1.3859
199 R A -1.6196
200 L A 0.0000
201 D A -0.9600
202 V A 0.0000
203 T A -0.7346
204 S A -0.3451
205 N A 0.0000
206 K A -1.8951
207 L A 0.0000
208 Q A -1.9276
209 K A -1.8571
210 L A 0.0000
211 P A 0.0000
212 P A -0.8981
213 D A 0.0000
214 P A -1.2175
215 L A 0.0000
216 F A 0.0000
217 Q A -2.3868
218 R A -2.3075
219 A A 0.0000
220 Q A -1.1939
221 V A 0.4395
222 L A 1.9101
223 A A 1.9307
224 T A 1.1629
225 S A 0.5413
226 G A 0.8648
227 I A 2.8520
228 I A 3.1454
229 S A 1.7380
230 P A 0.5365
231 S A -0.3263
232 T A -0.9792
233 F A 0.0000
234 A A -0.8721
235 L A 0.0000
236 S A -0.8299
237 F A 0.0000
238 G A 0.0000
239 G A -0.4731
240 N A 0.0000
241 P A -0.9538
242 L A 0.0000
243 H A -0.7553
244 C A 0.0000
245 N A 0.0000
246 C A -0.0935
247 E A -0.3078
248 L A 0.0000
249 L A -0.5893
250 W A -0.6819
251 L A 0.0000
252 R A -1.2592
253 R A -2.2309
254 L A 0.0000
255 S A -1.1237
256 R A -2.0346
257 E A -3.0811
258 D A -2.9953
259 D A -2.3765
260 L A -0.0774
261 E A 0.0000
262 T A -0.0177
263 C A 0.0000
264 A A -0.2493
265 S A -0.0979
266 P A 0.4455
267 A A 0.6776
268 L A 1.3212
269 L A 0.0000
270 T A 0.0154
271 G A -0.4906
272 R A -0.2964
273 Y A 0.1977
274 F A 0.0000
275 W A -0.9739
276 S A -0.2579
277 I A 0.0000
278 P A -1.4466
279 E A -2.0513
280 E A -2.1802
281 E A -1.0409
282 F A 0.0000
283 L A 0.1206
284 C A -0.5676
285 E A -1.8049
286 P A -1.6001
287 P A 0.0000
288 L A -0.4830
289 I A -0.8385
290 T A -1.3178
291 R A -2.9352
292 H A -2.5827
293 T A -2.0642
294 H A -2.1785
295 E A -2.1206
296 M A -1.6160
297 R A -1.8957
298 V A -1.1966
299 L A -0.4807
300 E A -1.0167
301 G A -0.7310
302 Q A -1.6297
303 R A -1.8429
304 A A 0.0000
305 T A -0.5761
306 L A 0.0000
307 R A -2.4104
308 C A 0.0000
309 K A -2.5459
310 A A -1.8396
311 R A -2.7479
312 G A -2.0627
313 D A -1.6801
314 P A 0.0000
315 E A -2.6196
316 P A -1.9471
317 A A -1.4511
318 I A -0.9715
319 H A -0.4678
320 W A 0.0000
321 I A -0.2242
322 S A -0.8611
323 P A -1.6161
324 E A -2.5802
325 G A -1.7239
326 K A -1.5878
327 L A 0.3904
328 I A 0.1709
329 S A -0.4654
330 N A -1.0901
331 A A -0.6184
332 T A -0.3242
333 R A -0.4875
334 S A -0.2628
335 L A 0.1914
336 V A -0.4719
337 Y A -0.9561
338 D A -2.1572
339 N A -2.3041
340 G A 0.0000
341 T A 0.0000
342 L A 0.0000
343 D A 0.0000
344 I A 0.0000
345 L A 0.0737
346 I A 0.2826
347 T A 0.0000
348 T A -0.5856
349 V A -0.4186
350 K A -1.7069
351 D A -1.0149
352 T A -0.8078
353 G A -0.9397
354 A A -0.8709
355 F A 0.0000
356 T A -0.2995
357 C A 0.0000
358 I A -0.5078
359 A A 0.0000
360 S A -1.3450
361 N A -1.6464
362 P A -1.1213
363 A A -0.9356
364 G A -1.3224
365 E A -1.7652
366 A A -0.5912
367 T A -0.4035
368 Q A -0.5651
369 T A -0.7160
370 M A 0.0000
371 D A -1.7229
372 L A 0.0000
373 H A -1.3548
374 I A 0.0000
375 I A 0.0605
376 K A -0.6887
377 L A 0.7083
378 P A 0.3883
379 H A 0.0658
380 L A 1.5523
381 L A 1.3185
382 N A -0.3084
383 S A -0.5529
384 T A -1.2118
385 N A -1.5427
386 N A -1.2163
387 I A 0.1830
388 H A -1.2856
389 E A -2.5871
390 P A -2.2767
391 D A -2.5415
392 P A -1.6432
393 G A -1.0754
394 S A -1.0165
395 S A -0.8257
396 D A -1.0112
397 I A 0.9758
398 S A 0.2420
399 T A -0.3917
400 S A -1.5527
401 T A -2.2410
402 K A -3.2821
403 S A -2.0611
404 G A -1.3725
405 S A -1.2950
406 N A -1.4779
407 A A -0.8514
408 S A -0.6138
409 S A -0.6862
410 S A -1.0773
411 N A -2.0527
412 G A -2.1778
413 D A -2.7188
414 T A -1.6212
415 K A -1.7141
416 M A -0.3057
417 S A -1.1000
418 Q A -1.6847
419 D A -1.9100
420 K A -2.4574
421 I A 0.0000
422 V A 0.4523
423 V A 0.5601
424 A A -0.1906
425 E A -1.3512
426 A A -1.0117
427 S A -1.6443
428 S A -1.9351
429 S A -1.5368
430 T A -0.9509
431 A A 0.0000
432 L A 0.2984
433 L A 0.0000
434 K A -0.9773
435 F A 0.0000
436 N A -2.4075
437 F A -2.1403
438 Q A -2.6627
439 R A -3.0096
440 N A -2.3372
441 I A -1.5203
442 P A -1.4499
443 G A -1.6905
444 I A -1.3292
445 R A -2.1268
446 M A -0.7727
447 F A 0.0000
448 Q A 0.1374
449 I A 0.0000
450 Q A 0.4175
451 Y A 0.0000
452 N A -0.7116
453 G A 0.0000
454 T A -0.1370
455 Y A 0.3837
456 D A -1.0876
457 D A -1.8595
458 T A -0.6320
459 L A 0.2197
460 V A 0.6991
461 Y A 1.3167
462 R A 0.3681
463 M A 0.2769
464 I A 0.0000
465 P A -0.7600
466 P A -0.9043
467 T A -0.7472
468 S A -1.1550
469 K A -2.1947
470 T A -0.6910
471 F A 0.3259
472 L A 0.9672
473 V A 0.0000
474 N A -1.0941
475 N A -1.7176
476 L A 0.0000
477 A A -0.9951
478 S A -1.3778
479 G A -1.5110
480 T A 0.0000
481 M A -0.2721
482 Y A 0.0000
483 D A -0.8847
484 L A 0.0000
485 C A 0.4218
486 V A 0.0000
487 L A 0.3123
488 A A 0.0000
489 I A 0.0000
490 Y A -1.5563
491 D A -1.8230
492 D A -0.4311
493 G A -0.0934
494 I A 1.5946
495 T A 0.8183
496 S A 0.3418
497 L A 1.0371
498 T A -0.3847
499 A A -0.6690
500 T A -0.5963
501 R A -0.9403
502 V A 0.9548
503 V A 0.0000
504 G A 0.0266
505 C A 0.0677
506 I A -0.4966
507 Q A -0.9302
508 F A -0.3167
509 T A -0.8335
510 T A 0.0000
511 E A -2.7776
512 Q A -2.3473
513 D A -1.8692
514 Y A 0.2091
515 V A 0.8884
516 R A -0.2802
517 C A 0.8217
518 H A 0.2838
519 F A 1.5614
520 M A 1.1877
521 Q A -0.0174
522 S A 0.1649
523 Q A -0.2906
524 F A 1.9073
525 L A 2.6125
526 G A 1.7846
527 G A 2.1246
528 T A 2.7597
529 M A 3.5367
530 I A 4.2946
531 I A 4.5368
532 I A 4.3682
533 I A 4.5465
534 G A 3.8608
535 G A 3.7268
536 I A 4.8638
537 I A 5.0620
538 V A 4.7835
539 A A 3.9203
540 S A 4.0515
541 V A 5.2520
542 L A 5.2990
543 V A 5.1895
544 F A 5.3170
545 I A 4.3858
546 I A 4.3555
547 I A 3.5286
548 L A 2.7243
549 M A 2.5928
550 I A 2.0551
551 R A 0.3292
552 Y A 0.8533
553 K A -0.7392
554 V A 0.6068
555 C A -0.1172
556 N A -2.0659
557 N A -2.3319
558 N A -2.6704
559 G A -2.4972
560 Q A -2.6731
561 H A -2.2288
562 K A -1.4777
563 V A 0.1127
564 T A 0.0330
565 K A -0.4659
566 V A 0.5046
567 S A 0.0875
568 N A 0.2370
569 V A 1.6154
570 Y A 1.4604
571 S A 0.1835
572 Q A -1.2788
573 T A -1.4013
574 N A -1.7811
575 G A -1.4084
576 A A -0.8079
577 Q A -0.9415
578 M A -0.2716
579 Q A -1.0354
580 G A -0.5258
581 C A 0.5363
582 S A 0.9162
583 V A 2.0841
584 T A 1.3379
585 L A 1.3797
586 P A -0.0745
587 Q A -0.8497
588 S A -0.3107
589 M A 0.2529
590 S A -0.7093
591 K A -2.1620
592 Q A -1.8185
593 A A -0.5545
594 M A 0.4037
595 G A -0.9228
596 H A -2.4204
597 E A -3.8174
598 E A -4.0806
599 N A -3.5271
600 A A -2.1677
601 Q A -1.4020
602 C A 0.2172
603 C A 0.3636
604 K A -0.3385
605 V A 1.1324
606 A A 0.0754
607 S A -0.8113
608 D A -1.9815
609 S A -0.6415
610 A A 0.3135
611 I A 1.3455
612 Q A -0.5628
613 S A -0.8996
614 S A -1.3262
615 E A -1.9815
616 T A -0.8515
617 C A -0.0143
618 S A -0.1526
619 S A -1.0907
620 Q A -2.3460
621 D A -2.6820
622 S A -1.4570
623 S A -0.7236
624 T A -0.2665
625 T A -0.2344
626 T A -0.2140
627 S A 0.0836
628 A A 0.5940
629 L A 1.3386
630 P A 0.5419
631 P A 0.2346
632 T A 0.4408
633 W A 0.9506
634 T A 0.3084
635 S A -0.1089
636 S A -0.2539
637 A A 0.1190
638 P A 0.5075
639 V A 1.2819
640 S A -0.3288
641 Q A -1.9551
642 K A -3.3026
643 Q A -3.5744
644 K A -3.9727
645 R A -3.8818
646 K A -3.2426
647 T A -1.5456
648 G A -1.2543
649 T A -1.2025
650 K A -1.9955
651 P A -1.1803
652 S A -1.0604
653 A A -1.0212
654 E A -2.2352
655 P A -1.9030
656 Q A -2.2762
657 S A -1.9238
658 E A -1.8507
659 A A -0.1543
660 V A 1.3283
661 T A 0.5506
662 N A -0.5385
663 V A 0.3841
664 E A -1.6643
665 S A -1.6988
666 Q A -2.3748
667 N A -2.2185
668 T A -2.0047
669 N A -2.9657
670 R A -3.4741
671 N A -3.2264
672 N A -2.6660
673 S A -1.1731
674 T A -0.3456
675 A A 0.4289
676 L A 1.3142
677 Q A 0.3142
678 L A 1.2982
679 A A 0.6787
680 S A 0.3513
681 C A 0.4650
682 P A -0.5067
683 P A -1.1471
684 D A -1.7088
685 S A -0.4042
686 V A 0.8601
687 T A -0.1060
688 E A -1.8006
689 G A -1.6497
690 P A -1.0591
691 T A -0.8909
692 S A -1.2188
693 Q A -2.2122
694 R A -2.6500
695 A A -1.7529
696 H A -1.8257
697 T A -1.4779
698 K A -2.3917
699 P A -1.9520
700 N A -1.4085
701 A A 0.4642
702 L A 2.0369
703 L A 2.1987
704 T A 0.8171
705 N A -0.5780
706 V A 0.0924
707 D A -1.9006
708 Q A -2.2430
709 N A -1.9816
710 V A -0.3290
711 Q A -1.8774
712 E A -2.8125
713 T A -2.0917
714 Q A -2.6873
715 R A -2.4293
716 L A -0.2101
717 E A -1.3381
718 S A 0.0696
719 I A 1.7561
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.304 8.785 View CSV PDB
4.5 -0.357 8.7864 View CSV PDB
5.0 -0.4189 8.7905 View CSV PDB
5.5 -0.4764 8.8015 View CSV PDB
6.0 -0.5159 8.8256 View CSV PDB
6.5 -0.531 8.8645 View CSV PDB
7.0 -0.5255 8.9133 View CSV PDB
7.5 -0.5087 8.9664 View CSV PDB
8.0 -0.4864 9.0208 View CSV PDB
8.5 -0.4589 9.0753 View CSV PDB
9.0 -0.4244 9.128 View CSV PDB