Project name: 7c6deab017fb24

Status: done

Started: 2026-10-21 12:34:46
Settings
Chain sequence(s) MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKAFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPNKIPDRAAQLMQQMANSNGSILPSALSASKSNLVISDPIPGAKPLPVPPELAPFVGRMSAQENVPVMNGVAGADSEDYNPWADRKAAQPKSLSPPQSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLALPPPDYGTSSRAFPSQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSRNPFANVHLKPTVTNDRSAPLLS input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:21:41)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/7c6deab017fb24/tmp/folded.pdb                 (00:21:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:30:50)
Show buried residues

Minimal score value
-4.7314
Maximal score value
2.916
Average score
-0.9805
Total score value
-524.5795

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7614
2 S A -0.4975
3 L A -0.5050
4 S A -1.3516
5 R A -2.8745
6 S A 0.0000
7 E A -3.1439
8 E A -3.4077
9 M A -2.3614
10 H A 0.0000
11 R A -2.7755
12 L A -1.2185
13 T A 0.0000
14 E A -1.5864
15 N A -1.8163
16 V A -1.0042
17 Y A 0.0000
18 K A -2.0958
19 T A -1.8086
20 I A 0.0000
21 M A -1.5220
22 E A -2.5975
23 Q A -2.1971
24 F A -1.2157
25 N A 0.0000
26 P A -1.5354
27 S A -1.2772
28 L A 0.0000
29 R A -1.9264
30 N A -1.2311
31 F A 0.1170
32 I A 0.0000
33 A A -0.6218
34 M A 0.1878
35 G A 0.0000
36 K A -1.5058
37 N A -1.4849
38 Y A -0.4776
39 E A -1.2582
40 K A -1.8994
41 A A -0.6142
42 L A 0.3057
43 A A 0.3352
44 G A 0.9424
45 V A 1.9365
46 T A 1.0671
47 F A 2.2519
48 A A 1.4713
49 A A 0.5290
50 K A -0.4890
51 G A -0.1605
52 Y A 0.3816
53 F A 0.0000
54 D A -2.0321
55 A A -1.1791
56 L A 0.0000
57 V A -1.0350
58 K A -1.6784
59 M A -0.2161
60 G A 0.0000
61 E A -2.1387
62 L A -0.3510
63 A A -1.7762
64 S A -2.7828
65 E A -2.5608
66 S A -2.1696
67 Q A -2.2517
68 G A -2.3061
69 S A -2.1661
70 K A -3.7615
71 E A -3.0666
72 L A -1.4683
73 G A 0.0000
74 D A -2.5112
75 V A 0.0000
76 L A -0.4929
77 F A -0.4447
78 Q A -0.7053
79 M A -0.2180
80 A A 0.0000
81 E A -1.4163
82 V A 0.0000
83 H A -1.3500
84 R A -2.7491
85 Q A -1.9883
86 I A -1.5642
87 Q A 0.0000
88 N A -2.3757
89 Q A -2.0672
90 L A -1.6452
91 E A -2.2184
92 E A -2.8037
93 M A 0.0000
94 L A -1.8773
95 K A -3.0192
96 A A -2.3625
97 F A 0.0000
98 H A -2.2076
99 N A -2.4369
100 E A -2.3513
101 L A 0.0000
102 L A 0.0000
103 T A -1.9575
104 Q A -2.1040
105 L A 0.0000
106 E A -3.0671
107 Q A -2.6325
108 K A -2.1323
109 V A 0.0000
110 E A -2.5842
111 L A -0.5640
112 D A -0.9003
113 S A -0.9496
114 R A -1.4240
115 Y A 0.0936
116 L A 0.0000
117 S A -1.1978
118 A A -1.2461
119 A A -1.1010
120 L A -1.3813
121 K A -2.7236
122 K A -2.9651
123 Y A 0.0000
124 Q A -2.3094
125 T A -2.3032
126 E A -2.4048
127 Q A -2.6059
128 R A -3.1117
129 S A -2.2040
130 K A -2.8827
131 G A -3.1400
132 D A -3.7630
133 A A -2.6278
134 L A 0.0000
135 D A -3.6336
136 K A -3.5717
137 C A -2.2796
138 Q A -2.4453
139 A A -2.7570
140 E A -3.0689
141 L A 0.0000
142 K A -4.0597
143 K A -3.9788
144 L A -3.6284
145 R A -4.5026
146 K A -4.7314
147 K A -4.0454
148 S A -3.7448
149 Q A -3.1936
150 G A -2.3503
151 S A -2.4760
152 K A -2.5429
153 N A -2.1394
154 P A -2.5384
155 Q A -2.9214
156 K A -3.2284
157 Y A -2.4534
158 S A -2.3346
159 D A -2.7812
160 K A -2.4915
161 E A -1.9784
162 L A -0.2147
163 Q A -1.6186
164 Y A -0.9865
165 I A -0.1304
166 D A -1.6292
167 A A -1.1765
168 I A -1.4506
169 S A -1.7416
170 N A -2.6754
171 K A -3.0158
172 Q A -2.6244
173 G A -2.7864
174 E A -3.4599
175 L A 0.0000
176 E A -3.3111
177 N A -3.0490
178 Y A -2.3095
179 V A 0.0000
180 S A -2.1728
181 D A -2.7534
182 G A -1.5523
183 Y A -1.3896
184 K A -2.1263
185 T A -1.4406
186 A A 0.0000
187 L A -1.1574
188 T A -1.5935
189 E A 0.0000
190 E A -1.2855
191 R A -2.1833
192 R A -1.9119
193 R A -0.7719
194 F A 0.7693
195 C A 0.3101
196 F A -0.0325
197 L A 0.7462
198 V A 1.1834
199 E A -0.7788
200 K A -1.0800
201 Q A -1.0344
202 C A -0.7459
203 A A -1.2248
204 V A 0.0000
205 A A -1.2209
206 K A -1.8606
207 N A -1.6854
208 S A -1.0788
209 A A -1.0513
210 A A -1.2596
211 Y A -1.5143
212 H A -1.8254
213 S A -1.9813
214 K A -2.1149
215 G A -1.9736
216 K A -3.0622
217 E A -3.2568
218 L A -1.6225
219 L A -0.9452
220 A A -1.1851
221 Q A -1.4926
222 K A -0.4716
223 L A 0.6947
224 P A -0.1088
225 L A 0.4442
226 W A 0.0000
227 Q A -1.2049
228 Q A -1.3189
229 A A -1.1932
230 C A -1.1147
231 A A -1.5828
232 D A -2.7488
233 P A -1.8740
234 N A -2.2848
235 K A -2.2738
236 I A -0.6247
237 P A -1.8518
238 D A -2.6036
239 R A -2.8309
240 A A -1.4051
241 A A -1.4542
242 Q A -2.0704
243 L A -0.5728
244 M A -0.4040
245 Q A -1.7443
246 Q A -1.6600
247 M A -0.4095
248 A A -1.1827
249 N A -2.1682
250 S A -1.7009
251 N A -1.5664
252 G A -0.7795
253 S A 0.3149
254 I A 2.2238
255 L A 2.2565
256 P A 0.8617
257 S A 0.5658
258 A A 0.7555
259 L A 1.4315
260 S A 0.3489
261 A A -0.1467
262 S A -1.2605
263 K A -2.2049
264 S A -1.2199
265 N A -0.3517
266 L A 2.2176
267 V A 2.9160
268 I A 2.5556
269 S A 0.1370
270 D A -0.9569
271 P A -0.0746
272 I A 1.2796
273 P A 0.0321
274 G A -0.5182
275 A A -0.6149
276 K A -1.5906
277 P A -0.2087
278 L A 1.3031
279 P A 0.9860
280 V A 1.5865
281 P A 0.1800
282 P A -0.4794
283 E A -1.0818
284 L A 0.7842
285 A A 0.8953
286 P A 1.2409
287 F A 2.5524
288 V A 2.1450
289 G A 0.1424
290 R A -0.9971
291 M A 0.1563
292 S A -0.3168
293 A A -0.8043
294 Q A -2.3950
295 E A -2.6539
296 N A -1.5564
297 V A 1.0119
298 P A 1.3800
299 V A 2.2717
300 M A 1.1036
301 N A -0.2412
302 G A 0.0102
303 V A 1.1769
304 A A 0.6584
305 G A -0.3578
306 A A -1.1665
307 D A -2.3398
308 S A -2.4131
309 E A -2.9595
310 D A -2.3883
311 Y A -0.6283
312 N A -0.8837
313 P A -0.0422
314 W A 0.4432
315 A A -0.8029
316 D A -2.7570
317 R A -3.6064
318 K A -3.0063
319 A A -1.5399
320 A A -0.9073
321 Q A -1.6431
322 P A -1.7600
323 K A -1.8341
324 S A -0.3853
325 L A 0.9169
326 S A 0.3049
327 P A -0.4071
328 P A -1.0410
329 Q A -1.7698
330 S A -1.5222
331 Q A -2.0698
332 S A -1.3706
333 K A -1.5024
334 L A 0.0760
335 S A -0.6423
336 D A -1.5002
337 S A -0.5290
338 Y A 0.3492
339 S A -0.2919
340 N A -0.7711
341 T A 0.3245
342 L A 1.4572
343 P A 0.7227
344 V A 0.6426
345 R A -1.9167
346 K A -1.8782
347 S A -0.4276
348 V A 1.1978
349 T A 0.0755
350 P A -0.9889
351 K A -2.5670
352 N A -2.0890
353 S A -0.5890
354 Y A 0.9730
355 A A 0.6445
356 T A -0.2118
357 T A -1.4396
358 E A -2.9088
359 N A -2.8268
360 K A -2.4394
361 T A -0.5927
362 L A 0.3870
363 P A -0.7591
364 R A -1.8470
365 S A -1.1938
366 S A -0.7684
367 S A -0.0639
368 M A 1.0389
369 A A 0.6487
370 A A 0.2242
371 G A -0.2329
372 L A -0.1661
373 E A -2.4746
374 R A -3.4323
375 N A -2.9544
376 G A -2.3664
377 R A -2.4956
378 M A -0.7894
379 R A -1.1043
380 V A 0.0000
381 K A -0.8410
382 A A 0.0000
383 I A 0.0220
384 F A 0.6803
385 S A -0.6872
386 H A -0.3744
387 A A -0.7502
388 A A -0.8537
389 G A -1.5705
390 D A -2.4247
391 N A -1.8100
392 S A -1.2052
393 T A -0.6058
394 L A -0.3945
395 L A 0.0000
396 S A -0.6687
397 F A 0.0000
398 K A -2.4290
399 E A -1.9574
400 G A -1.2473
401 D A 0.0000
402 L A -1.1574
403 I A 0.0000
404 T A -1.0030
405 L A 0.0000
406 L A -0.2848
407 V A -0.1991
408 P A -1.1595
409 E A -2.1018
410 A A -1.5879
411 R A -2.8071
412 D A -2.7157
413 G A -1.3700
414 W A -0.3494
415 H A 0.0000
416 Y A 0.1782
417 G A 0.0000
418 E A -1.6780
419 S A 0.0000
420 E A -2.4549
421 K A -2.6998
422 T A -1.9805
423 K A -2.6567
424 M A -1.4646
425 R A -1.9064
426 G A 0.0000
427 W A 0.5156
428 F A 0.0000
429 P A 0.8085
430 F A 0.7685
431 S A 0.7922
432 Y A 0.7672
433 T A 0.0000
434 R A -0.7645
435 V A 0.1600
436 L A -0.4667
437 D A -2.0299
438 S A -1.7647
439 D A -2.7720
440 G A -2.3901
441 S A -2.2149
442 D A -2.8588
443 R A -2.1096
444 L A -0.0958
445 H A -0.2800
446 M A 0.9079
447 S A 0.4007
448 L A 0.6476
449 Q A -1.2552
450 Q A -2.0498
451 G A -2.0351
452 K A -2.4738
453 S A -1.4008
454 S A -0.8020
455 S A -0.5009
456 T A -0.5975
457 G A -0.8495
458 N A -0.5410
459 L A 0.9450
460 L A 0.7371
461 D A -2.0912
462 K A -3.3089
463 D A -3.5715
464 D A -2.1193
465 L A 0.4531
466 A A 1.0286
467 L A 1.5041
468 P A 0.0896
469 P A -0.4218
470 P A -0.8454
471 D A -1.5155
472 Y A 0.0826
473 G A -0.5007
474 T A -0.5470
475 S A -0.8124
476 S A -1.0666
477 R A -1.5504
478 A A -0.0607
479 F A 1.2123
480 P A 0.1209
481 S A -0.5131
482 Q A -1.2331
483 T A -0.8616
484 A A -0.5064
485 G A -0.2118
486 T A 0.3156
487 F A 0.7510
488 K A -1.7353
489 Q A -2.6794
490 R A -2.6515
491 P A -0.8172
492 Y A 1.0687
493 S A 1.4469
494 V A 2.3497
495 A A 1.7636
496 V A 2.0342
497 P A 0.9926
498 A A 1.1684
499 F A 1.5688
500 S A 0.1047
501 Q A -0.8425
502 G A -0.7870
503 L A -0.1781
504 D A -1.8424
505 D A -1.9256
506 Y A -0.1349
507 G A -0.4676
508 A A -0.6542
509 R A -1.5391
510 S A -0.6183
511 V A 0.3866
512 S A -0.8741
513 R A -1.8796
514 N A -1.6667
515 P A -0.4152
516 F A 1.2013
517 A A -0.0923
518 N A -0.1068
519 V A 1.4873
520 H A 0.0617
521 L A 0.5055
522 K A -0.9247
523 P A -0.3768
524 T A 0.2804
525 V A 0.8755
526 T A -0.6332
527 N A -2.2714
528 D A -3.1402
529 R A -3.1950
530 S A -1.6298
531 A A -0.3731
532 P A 0.6332
533 L A 2.1116
534 L A 2.1370
535 S A 0.9077
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.7237 5.7005 View CSV PDB
4.5 -0.8068 5.7005 View CSV PDB
5.0 -0.9075 5.7005 View CSV PDB
5.5 -1.0049 5.7005 View CSV PDB
6.0 -1.0769 5.7005 View CSV PDB
6.5 -1.1088 5.7005 View CSV PDB
7.0 -1.1016 5.7005 View CSV PDB
7.5 -1.0672 5.7005 View CSV PDB
8.0 -1.0169 5.7005 View CSV PDB
8.5 -0.9548 5.7005 View CSV PDB
9.0 -0.8798 5.7005 View CSV PDB