Project name: 89599b1a70736e

Status: done

Started: 2026-10-21 12:37:38
Settings
Chain sequence(s) MARCSNSMALLFSFGLLWLCSGVLGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQLISVHEREQIMTTNVWLTQEWEDYRLTWKPEDFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAVVSYDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSDVASLDDFTPSGEWDIIALPGRRNENPDDSTYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMAPWVKVVFLEKLPTLLFLQQPRHRCARQRLRLRRRQREREGAGTLFFREGPAADPCTCFVNPASMQGLAGAFQAEPAAAGLGRSMGPCSCGLREAVDGVRFIADHMRSEDDDQSVREDWKYVAMVIDRLFLWIFVFVCVFGTIGMFLQPLFQNYTATTFLHSDHSAPSSK input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:04)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:18:33)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/89599b1a70736e/tmp/folded.pdb                 (00:18:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:27:43)
Show buried residues

Minimal score value
-5.2458
Maximal score value
4.5094
Average score
-0.2541
Total score value
-127.3167

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7149
2 A A -0.3138
3 R A -1.5443
4 C A -0.3462
5 S A -0.6319
6 N A -1.0463
7 S A 0.2710
8 M A 1.5295
9 A A 1.6187
10 L A 2.7107
11 L A 3.7457
12 F A 4.2412
13 S A 3.6978
14 F A 4.3708
15 G A 3.8413
16 L A 4.5094
17 L A 4.2861
18 W A 3.8725
19 L A 3.8573
20 C A 3.2907
21 S A 2.1212
22 G A 1.6722
23 V A 2.3453
24 L A 1.3246
25 G A -0.6629
26 T A -1.2415
27 D A -2.3718
28 T A -2.8185
29 E A -3.7437
30 E A -3.9042
31 R A -3.1296
32 L A 0.0000
33 V A -2.1587
34 E A -3.0349
35 H A -2.4868
36 L A 0.0000
37 L A -1.7092
38 D A -2.2749
39 P A -1.9012
40 S A -1.6729
41 R A -2.5754
42 Y A 0.0000
43 N A -1.3050
44 K A -0.7847
45 L A 1.4186
46 I A 1.7564
47 R A 0.6176
48 P A 0.0000
49 A A -0.7190
50 T A -0.8957
51 N A -1.8219
52 G A -1.4943
53 S A -1.2705
54 E A -1.4734
55 L A -0.6566
56 V A 0.0000
57 T A -0.6765
58 V A 0.0000
59 Q A -1.0617
60 L A 0.0000
61 M A -0.2083
62 V A 0.0000
63 S A 0.0000
64 L A 0.0000
65 A A -0.7923
66 Q A -0.4728
67 L A 0.0000
68 I A 0.5279
69 S A -0.1490
70 V A 0.0000
71 H A -1.6995
72 E A -2.0327
73 R A -2.6473
74 E A -2.8793
75 Q A -2.2011
76 I A -1.4897
77 M A 0.0000
78 T A -0.0425
79 T A 0.0000
80 N A -0.0932
81 V A 0.0000
82 W A 0.2827
83 L A 0.0000
84 T A 0.0000
85 Q A 0.0000
86 E A -0.7892
87 W A 0.0000
88 E A -2.0604
89 D A 0.0000
90 Y A -0.1533
91 R A -0.7327
92 L A 0.0000
93 T A -0.8022
94 W A 0.0000
95 K A -3.5170
96 P A -3.8569
97 E A -4.3127
98 D A -3.8772
99 F A 0.0000
100 D A -3.7439
101 N A -3.8380
102 M A -3.1275
103 K A -3.1379
104 K A -2.9910
105 V A 0.0000
106 R A -2.5282
107 L A 0.0000
108 P A -1.5172
109 S A 0.0000
110 K A -2.1302
111 H A -1.7986
112 I A 0.0000
113 W A 0.0000
114 L A -0.2583
115 P A 0.0000
116 D A -0.7883
117 V A 0.0000
118 V A 0.0000
119 L A 0.0000
120 Y A 0.2964
121 N A -0.4508
122 N A -0.4311
123 A A -0.7653
124 D A -0.9135
125 G A -0.6302
126 M A 0.1699
127 Y A -0.3151
128 E A -0.9889
129 V A 0.4593
130 S A 1.1123
131 F A 2.2841
132 Y A 1.4479
133 S A 0.2005
134 N A -1.4324
135 A A 0.0000
136 V A -0.9428
137 V A 0.0000
138 S A 0.0000
139 Y A -1.4985
140 D A -2.3175
141 G A 0.0000
142 S A -1.1998
143 I A 0.0000
144 F A 0.1357
145 W A 0.0000
146 L A 0.8331
147 P A 0.0000
148 P A 1.0144
149 A A 0.0000
150 I A 0.6769
151 Y A 0.0000
152 K A -0.6812
153 S A 0.0000
154 A A -0.9907
155 C A 0.0000
156 K A -2.3528
157 I A 0.0000
158 E A -1.7472
159 V A 0.0000
160 K A -1.2564
161 H A -1.1509
162 F A 0.0000
163 P A 0.0000
164 F A -0.4121
165 D A 0.0000
166 Q A -2.2608
167 Q A 0.0000
168 N A -1.9564
169 C A 0.0000
170 T A -0.7175
171 M A 0.0000
172 K A -0.7543
173 F A 0.0000
174 R A -0.1938
175 S A 0.0000
176 W A 0.8130
177 T A 0.1473
178 Y A -0.3501
179 D A -0.7468
180 R A -1.4567
181 T A -0.9505
182 E A -1.1045
183 I A 0.0000
184 D A -0.7084
185 L A 0.0000
186 V A -0.4711
187 L A -0.9093
188 K A -1.3632
189 S A -1.0405
190 D A -1.5820
191 V A 0.6028
192 A A 0.0000
193 S A -0.1695
194 L A -0.4155
195 D A -2.1999
196 D A -2.3278
197 F A -1.0682
198 T A -0.6580
199 P A -0.8623
200 S A -1.0562
201 G A -1.3616
202 E A -1.5205
203 W A 0.0000
204 D A -2.5083
205 I A -0.5225
206 I A 0.2349
207 A A 0.4070
208 L A 0.0000
209 P A -0.2419
210 G A -1.1282
211 R A -2.1147
212 R A -2.0168
213 N A -1.9974
214 E A -3.0038
215 N A -2.4377
216 P A -2.1713
217 D A -2.7968
218 D A -2.4778
219 S A -1.7873
220 T A -1.3885
221 Y A -1.4463
222 V A 0.0000
223 D A 0.0000
224 I A 0.0000
225 T A 0.0000
226 Y A 0.0000
227 D A -0.5109
228 F A 0.0000
229 I A -0.6034
230 I A 0.0000
231 R A -2.2965
232 R A 0.0000
233 K A -1.6612
234 P A 0.5510
235 L A 1.9170
236 F A 2.3252
237 Y A 1.4964
238 T A 1.6305
239 I A 2.1479
240 N A 0.5379
241 L A 0.0000
242 I A 0.0000
243 I A 2.1105
244 P A 1.3942
245 C A 0.0000
246 V A 1.9454
247 L A 2.3967
248 I A 1.6671
249 T A 1.3682
250 S A 1.3332
251 L A 1.4640
252 A A 1.4099
253 I A 1.5490
254 L A 1.6387
255 V A 0.0000
256 F A 0.0000
257 Y A 1.6125
258 L A 0.0000
259 P A -0.6205
260 S A 0.0000
261 D A -2.1749
262 C A -1.1153
263 G A -1.3819
264 E A -1.6787
265 K A 0.0000
266 M A 0.5919
267 T A -0.0190
268 L A 0.5361
269 C A 0.0000
270 I A 1.7994
271 S A 1.1145
272 V A 0.0000
273 L A 1.8938
274 L A 2.3180
275 A A 1.6582
276 L A 0.0000
277 T A 2.1408
278 V A 3.0746
279 F A 2.1438
280 L A 1.9291
281 L A 2.2845
282 L A 1.5413
283 I A 0.0000
284 S A -0.2033
285 K A -1.1823
286 I A -0.6826
287 V A 0.0000
288 P A 0.0000
289 P A -0.7685
290 T A -0.2316
291 S A 0.3843
292 L A 0.9365
293 D A -0.2711
294 V A 0.0811
295 P A 0.0000
296 L A 0.0000
297 V A 0.0000
298 G A 0.0000
299 K A -0.3844
300 Y A 0.0000
301 L A 0.0000
302 M A 1.2558
303 F A 1.4157
304 T A 0.0000
305 M A 1.8734
306 V A 2.7568
307 L A 2.2266
308 V A 0.0000
309 T A 2.2534
310 F A 2.9502
311 S A 0.0000
312 I A 2.6495
313 V A 3.1936
314 T A 0.0000
315 S A 0.0000
316 V A 2.4968
317 C A 1.4487
318 V A 0.0000
319 L A -0.0725
320 N A -0.9308
321 V A 0.0000
322 H A -1.5857
323 H A -2.2552
324 R A -1.7762
325 S A -1.5499
326 P A -1.1609
327 T A -0.5122
328 T A -0.6333
329 H A -0.8672
330 T A -0.3458
331 M A -0.0008
332 A A 0.2439
333 P A 0.4534
334 W A 1.4265
335 V A 0.6469
336 K A -0.2696
337 V A 0.2684
338 V A 0.1258
339 F A -0.0735
340 L A 0.0000
341 E A -2.1269
342 K A -1.7315
343 L A 0.1647
344 P A 0.0000
345 T A 0.2731
346 L A 1.7259
347 L A 1.7085
348 F A 2.2357
349 L A 0.7305
350 Q A -1.2687
351 Q A -2.1039
352 P A -2.2212
353 R A -2.9534
354 H A -2.6336
355 R A -2.3996
356 C A -1.3864
357 A A -1.1423
358 R A -1.4088
359 Q A -1.6226
360 R A -2.1594
361 L A -0.7894
362 R A -1.6897
363 L A -1.9463
364 R A -3.6654
365 R A -4.0123
366 R A -4.6335
367 Q A -4.5645
368 R A -5.2458
369 E A -4.5361
370 R A -4.7475
371 E A -4.1841
372 G A -2.2995
373 A A -0.8237
374 G A -0.2631
375 T A 0.5126
376 L A 1.8258
377 F A 2.6350
378 F A 1.8504
379 R A -1.0937
380 E A -1.9111
381 G A -1.7241
382 P A -1.0901
383 A A -0.6894
384 A A -0.9328
385 D A -1.7217
386 P A -0.8206
387 C A 0.5301
388 T A 0.9766
389 C A 1.8425
390 F A 2.3393
391 V A 1.2799
392 N A -0.3550
393 P A -0.4236
394 A A -0.5948
395 S A -0.3587
396 M A 0.1402
397 Q A -0.7911
398 G A -0.1850
399 L A 1.0501
400 A A 0.5822
401 G A 0.0843
402 A A 0.8396
403 F A 1.3114
404 Q A -0.6196
405 A A -1.0587
406 E A -2.1353
407 P A -1.0763
408 A A -0.3783
409 A A -0.0301
410 A A 0.1315
411 G A 0.2302
412 L A 0.6512
413 G A -0.5945
414 R A -1.6392
415 S A -0.7136
416 M A 0.2572
417 G A -0.2054
418 P A 0.0956
419 C A 0.7215
420 S A 0.1729
421 C A -0.0180
422 G A -0.3371
423 L A 0.4143
424 R A -1.3783
425 E A -1.9247
426 A A -0.0758
427 V A 0.7078
428 D A 0.0018
429 G A 0.8271
430 V A 1.7183
431 R A 0.1818
432 F A 1.8944
433 I A 2.3700
434 A A 0.2683
435 D A -1.5108
436 H A -1.2072
437 M A -0.9556
438 R A -2.2759
439 S A -2.9014
440 E A -3.8628
441 D A -3.9450
442 D A -3.6515
443 D A -3.4775
444 Q A -3.5246
445 S A -2.6601
446 V A -1.9177
447 R A -3.0675
448 E A -2.0368
449 D A 0.0000
450 W A 0.0000
451 K A -1.7084
452 Y A -0.5811
453 V A 0.0000
454 A A 0.0000
455 M A 0.3564
456 V A 0.0000
457 I A 0.0000
458 D A 0.0000
459 R A 0.7850
460 L A 1.2645
461 F A 1.5859
462 L A 1.9691
463 W A 2.2914
464 I A 2.5703
465 F A 0.0000
466 V A 2.6689
467 F A 3.3073
468 V A 2.8303
469 C A 2.4642
470 V A 2.7735
471 F A 3.2669
472 G A 2.0158
473 T A 1.9449
474 I A 2.1056
475 G A 1.1035
476 M A 0.6551
477 F A 1.0681
478 L A 1.2390
479 Q A -0.1255
480 P A 0.0000
481 L A 1.5358
482 F A 1.8745
483 Q A -0.0204
484 N A 0.1706
485 Y A 1.6843
486 T A 1.0813
487 A A 0.8175
488 T A 0.5392
489 T A 0.7038
490 F A 1.4753
491 L A 0.3783
492 H A -1.0168
493 S A -1.0791
494 D A -2.0994
495 H A -1.9546
496 S A -1.4730
497 A A -0.9736
498 P A -0.7917
499 S A -0.8919
500 S A -1.2195
501 K A -1.8903
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 0.1814 7.8868 View CSV PDB
4.5 0.1115 7.8868 View CSV PDB
5.0 0.0268 7.8868 View CSV PDB
5.5 -0.0581 7.8868 View CSV PDB
6.0 -0.1316 7.8868 View CSV PDB
6.5 -0.1868 7.8868 View CSV PDB
7.0 -0.2229 7.8868 View CSV PDB
7.5 -0.2446 7.8868 View CSV PDB
8.0 -0.2569 7.8868 View CSV PDB
8.5 -0.2604 7.8868 View CSV PDB
9.0 -0.2533 7.8868 View CSV PDB