Project name: 938088fdfed1bc

Status: done

Started: 2026-11-12 11:47:31
Settings
Chain sequence(s) MWTGGRRPGRLRRAASAADMEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRRAQEELDKVTEKLRRIQSNYMALQRINQELEDKLYRMGQHYEEEKRAMSHEIVALNSHLLEAKVTIDKLSEDNELYRKDCNLAAQLLQCSQTYGRVHKVSELPSDFQQRVSLHMEKHGCSLPSPLCHPSYADSVPTCVIAKVLEKPDPGSLSSRMSDASARDLAYRDGVENPGPRPPYKGDIYCSDTALYCPDERDHDRRPSVDTPVTDVGFLRAQNSTDSLAEEEEAEAAAFPEAYRREAFQGYAASLPTSSSYSSFSATSEEKEHAQASTLTASQQAIYLNSREELFSRKPPSATYGSSPRYAKAAATLGSPLEAQVAPGFARTVSPYPAEPYRYPASQQALMPPNLWSLRAKPSGNRLAAREDIRGQWRPLSVEDVGAYSYQAGAAGRAASPCNFSERFYGGGGGGGSPGKNAEGRASPLYASYKADSFSEGDDLSQGHLAEPCFLRAGGDLSLSPSRSADPLPGYATSDGDGDRLGVQLCGPGSSPEPEHGSRDSLEPSSMEASPEMHPPTRLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:08:39)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/938088fdfed1bc/tmp/folded.pdb                 (00:08:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:18:54)
Show buried residues

Minimal score value
-4.7036
Maximal score value
2.5059
Average score
-0.8976
Total score value
-548.4525

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.6718
2 W A 1.6017
3 T A 0.4287
4 G A -0.7316
5 G A -1.9014
6 R A -3.1634
7 R A -3.2866
8 P A -2.1819
9 G A -1.7938
10 R A -2.0325
11 L A -0.7453
12 R A -2.4169
13 R A -2.3647
14 A A -1.1516
15 A A -0.6377
16 S A -0.6041
17 A A -0.4744
18 A A -0.8966
19 D A -1.1097
20 M A -0.3197
21 E A -1.9109
22 K A -1.6730
23 L A -0.2107
24 S A -1.3608
25 A A -1.4581
26 L A -0.8698
27 Q A -2.6382
28 E A -3.6324
29 Q A -3.3574
30 K A -4.0960
31 G A -3.8628
32 E A -4.1641
33 L A -2.8070
34 R A -3.4652
35 K A -3.0687
36 R A -2.3173
37 L A -0.4672
38 S A -0.7828
39 Y A -0.2299
40 T A -0.7931
41 T A -0.8745
42 H A -1.7840
43 K A -2.1918
44 L A -1.7064
45 E A -3.2292
46 K A -3.3911
47 L A -2.1891
48 E A -3.0026
49 T A -2.4155
50 E A -2.4935
51 F A -0.7533
52 D A -1.7479
53 S A -1.1788
54 T A -0.5104
55 R A -0.9428
56 H A -0.3804
57 Y A 1.2781
58 L A 0.7732
59 E A 0.1731
60 I A 0.6711
61 E A -0.4673
62 L A 0.1083
63 R A -1.9805
64 R A -2.0197
65 A A -1.5295
66 Q A -2.6136
67 E A -3.4018
68 E A -2.1540
69 L A -1.1727
70 D A -2.7413
71 K A -2.7184
72 V A -1.2900
73 T A -1.4714
74 E A -2.4859
75 K A -2.5118
76 L A -1.1353
77 R A -2.8111
78 R A -2.7233
79 I A -0.7840
80 Q A -1.1754
81 S A -0.9569
82 N A -0.6471
83 Y A 0.7140
84 M A 0.5846
85 A A 0.2900
86 L A 0.1655
87 Q A -1.3475
88 R A -2.0732
89 I A -0.1945
90 N A -2.3220
91 Q A -3.1914
92 E A -2.8828
93 L A -1.5374
94 E A -2.0478
95 D A -2.3396
96 K A -2.5350
97 L A -0.4661
98 Y A -0.5079
99 R A -2.1389
100 M A -1.2131
101 G A -1.1005
102 Q A -2.7698
103 H A -2.7740
104 Y A -2.1677
105 E A -3.7820
106 E A -4.4852
107 E A -4.2635
108 K A -4.4050
109 R A -4.2162
110 A A -2.7727
111 M A -1.5632
112 S A -1.4233
113 H A -1.3730
114 E A -0.9114
115 I A 1.3145
116 V A 1.5958
117 A A 0.7156
118 L A 0.9122
119 N A 0.2746
120 S A -0.0783
121 H A -0.5272
122 L A 0.5821
123 L A 0.6844
124 E A -1.1192
125 A A -0.6535
126 K A -0.8016
127 V A 0.1463
128 T A -0.1120
129 I A 0.1097
130 D A -2.1786
131 K A -2.5736
132 L A -1.0968
133 S A -2.0918
134 E A -3.2582
135 D A -2.9647
136 N A -2.3523
137 E A -3.0896
138 L A -1.4394
139 Y A -1.6516
140 R A -2.5408
141 K A -3.0702
142 D A -2.6446
143 C A -1.6387
144 N A -1.9702
145 L A -1.3685
146 A A -0.6386
147 A A -0.5510
148 Q A -0.7972
149 L A 0.2679
150 L A 0.5809
151 Q A -0.9261
152 C A -0.6032
153 S A -0.4244
154 Q A -1.1246
155 T A -0.4707
156 Y A 0.4196
157 G A -0.5216
158 R A -1.1934
159 V A 0.5407
160 H A -0.7831
161 K A -1.3216
162 V A -0.9394
163 S A -1.0796
164 E A -0.9803
165 L A -1.0074
166 P A -1.0462
167 S A -1.8806
168 D A -2.7690
169 F A 0.0000
170 Q A -2.2076
171 Q A -2.6296
172 R A -2.8938
173 V A 0.0000
174 S A -1.4476
175 L A -1.5605
176 H A -1.9767
177 M A -1.4937
178 E A -2.7640
179 K A -2.8084
180 H A -2.0295
181 G A -1.2723
182 C A 0.2310
183 S A 0.4733
184 L A 1.3097
185 P A 0.5653
186 S A 0.3746
187 P A 0.5411
188 L A 1.4780
189 C A 1.1021
190 H A -0.1402
191 P A -0.3872
192 S A -0.1213
193 Y A 0.7371
194 A A -0.1978
195 D A -1.0197
196 S A -0.2388
197 V A 0.0000
198 P A -0.0934
199 T A 0.1129
200 C A 0.4277
201 V A -0.0770
202 I A -0.1056
203 A A -0.6462
204 K A -2.1487
205 V A -1.2152
206 L A -0.9766
207 E A -3.0307
208 K A -3.2106
209 P A -2.5080
210 D A -2.7494
211 P A -1.4344
212 G A -0.9127
213 S A -0.2920
214 L A 0.8959
215 S A 0.0681
216 S A -0.6467
217 R A -1.6610
218 M A -0.6401
219 S A -1.1860
220 D A -1.8833
221 A A -0.9477
222 S A -0.9161
223 A A -1.3093
224 R A -2.4829
225 D A -1.9702
226 L A 0.4676
227 A A 0.2617
228 Y A 0.3567
229 R A -2.0090
230 D A -2.2523
231 G A -1.1563
232 V A -0.1871
233 E A -1.7508
234 N A -2.0522
235 P A -1.5515
236 G A -1.3678
237 P A -1.4947
238 R A -2.0775
239 P A -1.3223
240 P A -0.7033
241 Y A 0.0241
242 K A -1.5460
243 G A -1.1571
244 D A -0.8965
245 I A 1.5353
246 Y A 1.8521
247 C A 1.1237
248 S A 0.0540
249 D A -1.3654
250 T A -0.2024
251 A A 0.6578
252 L A 2.1687
253 Y A 2.1739
254 C A 0.9585
255 P A -0.7300
256 D A -3.0696
257 E A -4.0161
258 R A -4.2643
259 D A -4.4341
260 H A -3.9288
261 D A -4.0361
262 R A -4.2246
263 R A -3.5404
264 P A -1.3037
265 S A -0.2076
266 V A 0.7471
267 D A -1.0828
268 T A -0.3426
269 P A 0.1420
270 V A 1.2047
271 T A 0.3758
272 D A -0.6858
273 V A 1.0538
274 G A 1.2460
275 F A 2.5059
276 L A 1.6104
277 R A -0.9104
278 A A -1.5112
279 Q A -2.2591
280 N A -2.2000
281 S A -1.7536
282 T A -1.4095
283 D A -1.7292
284 S A -0.7146
285 L A 0.0056
286 A A -1.6060
287 E A -2.9660
288 E A -3.9215
289 E A -4.7036
290 E A -4.1477
291 A A -2.9016
292 E A -2.6633
293 A A -1.0277
294 A A 0.2919
295 A A 0.7760
296 F A 1.4310
297 P A 0.1890
298 E A -1.3130
299 A A -0.5499
300 Y A -0.8512
301 R A -2.7768
302 R A -3.1654
303 E A -2.4866
304 A A -0.6502
305 F A 0.4171
306 Q A -0.6561
307 G A -0.1816
308 Y A 0.8179
309 A A 0.7992
310 A A 0.5851
311 S A 0.6628
312 L A 1.2798
313 P A 0.5053
314 T A -0.0412
315 S A -0.2981
316 S A -0.1636
317 S A 0.1995
318 Y A 1.0102
319 S A 0.6232
320 S A 0.8834
321 F A 1.7007
322 S A 0.7309
323 A A 0.0501
324 T A -0.5888
325 S A -1.5329
326 E A -3.2339
327 E A -4.0105
328 K A -4.1825
329 E A -3.5343
330 H A -2.4382
331 A A -1.4770
332 Q A -1.4195
333 A A -0.4977
334 S A -0.2234
335 T A 0.1969
336 L A 0.7220
337 T A 0.0870
338 A A 0.1908
339 S A 0.2810
340 Q A 0.4317
341 Q A 0.3537
342 A A 0.6564
343 I A 1.5569
344 Y A 0.9897
345 L A -0.2657
346 N A -1.5912
347 S A -1.3645
348 R A -2.2488
349 E A -2.9502
350 E A -2.5640
351 L A -0.0223
352 F A 0.3596
353 S A -1.5535
354 R A -2.5738
355 K A -2.5568
356 P A -1.7318
357 P A -1.0731
358 S A -0.4725
359 A A 0.0460
360 T A 0.4309
361 Y A 0.9705
362 G A 0.0094
363 S A -0.2673
364 S A -0.7437
365 P A -1.0418
366 R A -1.3556
367 Y A 0.0199
368 A A -0.4923
369 K A -1.2626
370 A A -1.2252
371 A A -1.1133
372 A A 0.1205
373 T A 0.5399
374 L A 1.2289
375 G A 0.2769
376 S A -0.0708
377 P A 0.0621
378 L A 0.4372
379 E A -1.3779
380 A A -0.7430
381 Q A -0.6861
382 V A 1.1629
383 A A 0.7022
384 P A 0.3673
385 G A 0.3733
386 F A 1.2894
387 A A 0.1343
388 R A -1.0210
389 T A 0.0252
390 V A 1.2661
391 S A 0.6022
392 P A 0.6567
393 Y A 1.0084
394 P A -0.1242
395 A A -0.4939
396 E A -1.7104
397 P A -0.8105
398 Y A 0.1854
399 R A -0.8828
400 Y A 0.5952
401 P A -0.1041
402 A A -0.3863
403 S A -0.9653
404 Q A -1.6970
405 Q A -1.3054
406 A A 0.1170
407 L A 1.5706
408 M A 1.5064
409 P A 0.4313
410 P A -0.1509
411 N A -0.4006
412 L A 1.5715
413 W A 1.7775
414 S A 1.0015
415 L A 0.8560
416 R A -1.4625
417 A A -1.4415
418 K A -2.0533
419 P A -1.2430
420 S A -1.1683
421 G A -1.6119
422 N A -2.1326
423 R A -1.7518
424 L A 0.3924
425 A A -0.1791
426 A A -1.2177
427 R A -3.1230
428 E A -3.3662
429 D A -2.6882
430 I A -0.4015
431 R A -2.0152
432 G A -1.6001
433 Q A -1.5596
434 W A -0.4722
435 R A -1.3594
436 P A 0.0295
437 L A 0.9397
438 S A 0.2995
439 V A 0.9801
440 E A -1.2098
441 D A -1.1065
442 V A 0.9775
443 G A -0.0409
444 A A 0.4111
445 Y A 1.5454
446 S A 0.7212
447 Y A 0.9002
448 Q A -0.5581
449 A A -0.4412
450 G A -0.5474
451 A A -0.5952
452 A A -0.6617
453 G A -1.2848
454 R A -2.0047
455 A A -0.9613
456 A A -0.4219
457 S A -0.2814
458 P A -0.2809
459 C A 0.3003
460 N A -0.0587
461 F A 1.0437
462 S A -0.7051
463 E A -2.0468
464 R A -1.4831
465 F A 1.1162
466 Y A 1.4772
467 G A 0.2581
468 G A -0.5413
469 G A -1.1076
470 G A -1.1192
471 G A -1.1119
472 G A -1.1060
473 G A -0.9929
474 S A -0.7688
475 P A -1.0470
476 G A -1.8424
477 K A -2.5977
478 N A -2.4914
479 A A -1.9326
480 E A -2.6891
481 G A -2.3346
482 R A -2.4511
483 A A -1.0676
484 S A -0.3116
485 P A 0.6552
486 L A 2.0316
487 Y A 2.0059
488 A A 1.1539
489 S A 0.3382
490 Y A 0.4191
491 K A -1.4694
492 A A -1.4811
493 D A -1.7977
494 S A 0.0317
495 F A 1.6600
496 S A 0.2657
497 E A -1.8274
498 G A -2.8133
499 D A -3.0809
500 D A -2.3943
501 L A -0.0762
502 S A -0.4984
503 Q A -1.4348
504 G A -1.0780
505 H A -0.7390
506 L A 0.6523
507 A A -0.2217
508 E A -1.2157
509 P A -0.2854
510 C A 1.4082
511 F A 2.5005
512 L A 1.6542
513 R A -0.7469
514 A A -1.0962
515 G A -1.3654
516 G A -1.4166
517 D A -1.4738
518 L A 0.8391
519 S A 0.8018
520 L A 1.6045
521 S A 0.3153
522 P A -0.5051
523 S A -1.1953
524 R A -2.0969
525 S A -1.5352
526 A A -1.4921
527 D A -1.6163
528 P A -0.4533
529 L A 0.8274
530 P A 0.4617
531 G A 0.3894
532 Y A 1.0496
533 A A 0.5457
534 T A -0.2311
535 S A -1.2016
536 D A -2.5398
537 G A -2.4464
538 D A -3.0630
539 G A -2.6602
540 D A -2.9918
541 R A -2.1252
542 L A 0.3901
543 G A 0.5965
544 V A 1.5786
545 Q A 0.4699
546 L A 1.5478
547 C A 0.9214
548 G A 0.0313
549 P A -0.4708
550 G A -0.7942
551 S A -0.7069
552 S A -0.8797
553 P A -1.3336
554 E A -2.5705
555 P A -2.5241
556 E A -2.9630
557 H A -2.1991
558 G A -1.9005
559 S A -2.0381
560 R A -2.9483
561 D A -2.4884
562 S A -1.1850
563 L A 0.1055
564 E A -1.2955
565 P A -1.0651
566 S A -0.6689
567 S A -0.2534
568 M A -0.1289
569 E A -1.2774
570 A A -0.7639
571 S A -1.0372
572 P A -1.0874
573 E A -1.6767
574 M A -0.4350
575 H A -1.0804
576 P A -0.7126
577 P A -1.0917
578 T A -0.8466
579 R A -1.2027
580 L A 0.3026
581 S A -0.1836
582 P A -0.8086
583 Q A -1.5436
584 Q A -1.3153
585 A A -0.2460
586 F A 0.9306
587 P A -0.4464
588 R A -1.7232
589 T A -1.0816
590 G A -1.2540
591 G A -1.2461
592 S A -0.9336
593 G A -0.7254
594 L A -0.6670
595 S A -1.6439
596 R A -2.8791
597 K A -2.9906
598 D A -2.5204
599 S A -1.6790
600 L A -1.1992
601 T A -1.0974
602 K A -0.8812
603 A A -0.0427
604 Q A -0.1258
605 L A 1.2732
606 Y A 1.3368
607 G A 0.5706
608 T A 0.6378
609 L A 1.0623
610 L A 1.0644
611 N A -0.3363
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.4455 5.8233 View CSV PDB
4.5 -0.5538 5.7619 View CSV PDB
5.0 -0.6933 5.6738 View CSV PDB
5.5 -0.8382 5.5735 View CSV PDB
6.0 -0.9636 5.4768 View CSV PDB
6.5 -1.052 5.3994 View CSV PDB
7.0 -1.0984 5.3521 View CSV PDB
7.5 -1.1132 5.3305 View CSV PDB
8.0 -1.1107 5.3226 View CSV PDB
8.5 -1.0968 5.3199 View CSV PDB
9.0 -1.0703 5.3191 View CSV PDB