Project name: 946241dba1278e

Status: done

Started: 2026-11-12 11:57:32
Settings
Chain sequence(s) MQRAGSSGARGECDISGAGRLRLEQAARLGGRTVHTSPGGGLGARQAAGMSAKERPKGKVIKDSVTLLPCFYFVELPILASSVVSLYFLELTDVFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMVGEGILYCCLSKRRNGAGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLTVCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYVSMYFNSTLTDSSKLLKPLLVFTFIICGIICGLTRITQYKNHPVDVYCGFLIGGGIALYLGLYAVGNFLPSEDSMLQHRDALRSLTDLNQDPSRVLSAKNGSSGDGIAHTEGILNRNHRDASSLTNLKRANADVEIITPRSPMGKESMVTFSNTLPRANTPSVEDPVRRNASIHASMDSARSKQLLTQWKSKNESRKMSLQVMDTEPEGQSPPRSIEMRSSSEPSRVGVNGDHHVPGNQYLKIQPGTVPGCNNSMPGGPRVSIQSRPGSSQLVHIPEETQENISTSPKSSSARAKWLKAAEKTVACNRSNNQPRIMQVIAMSKQQGVLQSSPKNAEGSTVTCTGSIRYKTLTDHEPSGIVRVEAHPENNRPIIQIPSSTEGEGSGSWKWKAPEKSSLRQTYELNDLNRDSESCESLKDSFGSGDRKRSNIDSNEHHHHGITTIRVTPVEGSEIGSETLSVSSSRDSTLRRKGNIILIPERSNSPENTRNIFYKGTSPTRAYKD input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:05:58)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/946241dba1278e/tmp/folded.pdb                 (00:05:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:35)
Show buried residues

Minimal score value
-4.0605
Maximal score value
3.812
Average score
-0.4685
Total score value
-358.8425

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.0496
2 Q A -1.7424
3 R A -2.3325
4 A A -1.4412
5 G A -1.1416
6 S A -0.6308
7 S A -0.8159
8 G A -0.9656
9 A A -1.4090
10 R A -2.5472
11 G A -2.2233
12 E A -2.3891
13 C A -0.8310
14 D A -1.0923
15 I A 0.9206
16 S A 0.0584
17 G A -0.5503
18 A A -0.3993
19 G A -1.2374
20 R A -1.7117
21 L A -0.2041
22 R A -1.7888
23 L A -0.3264
24 E A -2.2137
25 Q A -2.2036
26 A A -0.8984
27 A A -1.1873
28 R A -1.6947
29 L A -0.0337
30 G A -0.8307
31 G A -1.4138
32 R A -1.5932
33 T A -0.5042
34 V A 0.7606
35 H A -0.2241
36 T A -0.3316
37 S A -0.5224
38 P A -0.7095
39 G A -0.9559
40 G A -0.6572
41 G A -0.1425
42 L A 1.0126
43 G A -0.1399
44 A A -1.0161
45 R A -2.4975
46 Q A -2.0738
47 A A -1.0201
48 A A -0.1723
49 G A 0.0510
50 M A 0.5682
51 S A -0.4062
52 A A -1.3570
53 K A -2.9361
54 E A -3.8113
55 R A -3.7517
56 P A -2.8543
57 K A -3.1826
58 G A -1.6991
59 K A -1.2464
60 V A 1.0957
61 I A 1.3537
62 K A -0.8626
63 D A -1.1795
64 S A -0.0418
65 V A 1.3162
66 T A 0.5535
67 L A 1.3231
68 L A 1.8089
69 P A 2.1168
70 C A 2.5737
71 F A 2.0094
72 Y A 2.9937
73 F A 3.4569
74 V A 2.7928
75 E A 1.1039
76 L A 1.8708
77 P A 1.5979
78 I A 2.0511
79 L A 1.4441
80 A A 1.1626
81 S A 1.1180
82 S A 0.0000
83 V A 2.5445
84 V A 2.5841
85 S A 1.6807
86 L A 1.9099
87 Y A 2.6104
88 F A 2.7859
89 L A 1.8527
90 E A 0.8138
91 L A 1.6534
92 T A 1.0052
93 D A -0.4101
94 V A 1.7611
95 F A 1.8081
96 K A -0.6067
97 P A 0.0000
98 V A 0.8676
99 H A -0.1476
100 S A 0.2785
101 G A 0.6647
102 F A 0.0000
103 S A 0.4415
104 C A 0.2524
105 Y A 0.7027
106 D A -0.6861
107 R A -1.7912
108 S A -0.9829
109 L A 0.0000
110 S A -0.6735
111 M A -0.0751
112 P A 0.1151
113 Y A 0.2706
114 I A -0.4823
115 E A -1.6130
116 P A -1.1562
117 T A -1.1848
118 Q A -1.7274
119 E A -1.0608
120 A A -0.2933
121 I A 0.4751
122 P A 0.4282
123 F A 1.4728
124 L A 2.2435
125 M A 1.8256
126 L A 0.0000
127 L A 1.8544
128 S A 1.7245
129 L A 2.4744
130 A A 0.0000
131 F A 1.9591
132 A A 1.6703
133 G A 1.4341
134 P A 0.0000
135 A A 1.8225
136 I A 2.8742
137 T A 1.5932
138 I A 0.0000
139 M A 2.2329
140 V A 2.7148
141 G A 0.0000
142 E A 0.0000
143 G A 2.0633
144 I A 2.7772
145 L A 1.9170
146 Y A 1.5423
147 C A 0.9079
148 C A 0.2830
149 L A -0.1198
150 S A -1.4312
151 K A -3.0953
152 R A -3.5623
153 R A -3.7314
154 N A -3.2929
155 G A -2.5328
156 A A -1.2263
157 G A -0.6543
158 L A 0.0745
159 E A -1.3928
160 P A -1.2779
161 N A -1.0260
162 I A 0.4187
163 N A -0.8338
164 A A -0.4067
165 G A -0.4977
166 G A -0.3424
167 C A 0.3057
168 N A -0.3456
169 F A 1.1296
170 N A -0.6173
171 S A -0.5044
172 F A 0.5244
173 L A 0.5042
174 R A -0.5369
175 R A -1.4207
176 A A 0.0000
177 V A -0.2075
178 R A -1.4280
179 F A 0.0000
180 V A 0.4152
181 G A -0.2018
182 V A 0.0644
183 H A 0.0000
184 V A 0.0000
185 F A 1.0714
186 G A 0.0000
187 L A 0.0000
188 C A 0.0000
189 S A 0.8877
190 T A 0.0000
191 A A 0.0000
192 L A 1.3693
193 I A 1.9588
194 T A 0.0000
195 D A 0.0000
196 I A 2.4909
197 I A 1.7226
198 Q A 0.0000
199 L A 1.1358
200 S A 0.8903
201 T A 0.7926
202 G A 0.0000
203 Y A 0.7511
204 Q A 0.0000
205 A A 0.0000
206 P A 0.0000
207 Y A 0.0000
208 F A 0.0000
209 L A 0.0000
210 T A -0.3641
211 V A -0.3250
212 C A 0.0000
213 K A -1.9172
214 P A -1.2643
215 N A -1.3611
216 Y A -0.3020
217 T A -0.3722
218 S A -0.8112
219 L A -0.8616
220 N A -1.1214
221 V A -0.8843
222 S A -1.2383
223 C A -1.1786
224 K A -2.5932
225 E A -2.7602
226 N A -1.7808
227 S A -0.6772
228 Y A 0.7957
229 I A 0.0000
230 V A 1.0205
231 E A -1.0255
232 D A -1.9446
233 I A 0.0000
234 C A -1.3069
235 S A -1.1620
236 G A -0.8797
237 S A -0.6443
238 D A -0.5235
239 L A 0.8981
240 T A -0.1240
241 V A 0.1629
242 I A 0.0000
243 N A -0.4024
244 S A -0.1576
245 G A 0.0000
246 R A 0.0000
247 K A 0.1005
248 S A 0.0000
249 F A 0.8674
250 P A 0.0000
251 S A 0.0000
252 Q A 0.2467
253 H A 0.0000
254 A A 0.0000
255 T A 0.0000
256 L A 0.0000
257 A A 0.0000
258 A A 0.0000
259 F A 0.0000
260 A A 0.0000
261 A A 0.0000
262 V A 0.7675
263 Y A 0.0000
264 V A 0.0000
265 S A 0.3459
266 M A 0.1398
267 Y A 0.0000
268 F A 0.0000
269 N A -1.0459
270 S A -0.3913
271 T A 0.0000
272 L A -0.7530
273 T A -1.4729
274 D A -2.1450
275 S A -1.1273
276 S A -0.8862
277 K A -1.1622
278 L A 1.0962
279 L A 1.1213
280 K A 0.1556
281 P A 1.1898
282 L A 2.3967
283 L A 1.9866
284 V A 1.9777
285 F A 3.3246
286 T A 2.5476
287 F A 2.5269
288 I A 2.8957
289 I A 3.5530
290 C A 2.8523
291 G A 0.0000
292 I A 2.8184
293 I A 2.8040
294 C A 0.0000
295 G A 0.0000
296 L A 2.0461
297 T A 1.0630
298 R A 0.5855
299 I A 1.0376
300 T A 0.4883
301 Q A 0.1737
302 Y A 0.7846
303 K A 0.0000
304 N A 0.0000
305 H A 0.7718
306 P A 1.1530
307 V A 2.1045
308 D A 0.0000
309 V A 0.0000
310 Y A 2.6181
311 C A 1.9853
312 G A 0.0000
313 F A 1.9447
314 L A 2.1473
315 I A 1.6755
316 G A 0.0000
317 G A 1.2219
318 G A 1.2479
319 I A 1.3947
320 A A 0.0000
321 L A 2.3582
322 Y A 2.5408
323 L A 0.0000
324 G A 0.0000
325 L A 2.0693
326 Y A 1.9176
327 A A 0.8467
328 V A 0.0000
329 G A 0.1803
330 N A -0.2344
331 F A 0.3830
332 L A 0.6896
333 P A -0.4755
334 S A -1.2964
335 E A -2.3676
336 D A -2.7935
337 S A -1.9422
338 M A -1.6755
339 L A -1.3491
340 Q A -2.7521
341 H A -2.7040
342 R A -2.9136
343 D A -2.9222
344 A A -1.3712
345 L A -0.4827
346 R A -2.5186
347 S A -1.0328
348 L A 0.3923
349 T A -1.1690
350 D A -2.1157
351 L A -0.4064
352 N A -2.0676
353 Q A -2.7083
354 D A -3.0856
355 P A -1.6943
356 S A -1.2439
357 R A -1.1665
358 V A 1.2888
359 L A 1.5972
360 S A 0.2027
361 A A -0.8707
362 K A -2.2655
363 N A -2.3574
364 G A -1.6096
365 S A -0.9028
366 S A -1.0239
367 G A -1.5908
368 D A -1.7980
369 G A -0.4557
370 I A 1.1858
371 A A 0.4708
372 H A -0.9966
373 T A -1.5883
374 E A -1.8369
375 G A -0.0875
376 I A 1.8016
377 L A 1.3872
378 N A -1.4370
379 R A -3.0247
380 N A -3.2845
381 H A -3.2929
382 R A -3.4876
383 D A -2.9143
384 A A -1.3103
385 S A -0.3696
386 S A 0.4154
387 L A 1.1048
388 T A 0.4360
389 N A -0.5944
390 L A -0.5284
391 K A -1.9627
392 R A -2.5475
393 A A -2.0591
394 N A -2.1487
395 A A -1.4940
396 D A -1.6004
397 V A 0.4910
398 E A 0.0665
399 I A 2.4813
400 I A 2.5294
401 T A 0.8685
402 P A -0.8265
403 R A -2.1321
404 S A -1.0876
405 P A -0.3228
406 M A 0.2679
407 G A -1.0930
408 K A -2.6265
409 E A -2.3955
410 S A -0.5131
411 M A 1.3463
412 V A 2.4692
413 T A 1.9347
414 F A 1.9127
415 S A 0.0842
416 N A -0.6034
417 T A 0.1475
418 L A 0.6821
419 P A -0.3174
420 R A -1.8743
421 A A -1.6415
422 N A -1.7252
423 T A -0.8606
424 P A -0.2930
425 S A -0.0047
426 V A 0.2310
427 E A -1.8021
428 D A -2.0756
429 P A -0.9520
430 V A 0.0883
431 R A -2.2422
432 R A -3.1320
433 N A -2.7429
434 A A -0.9069
435 S A 0.2770
436 I A 1.4335
437 H A 0.0395
438 A A 0.1737
439 S A -0.0842
440 M A -0.2017
441 D A -1.7174
442 S A -1.7840
443 A A -1.9023
444 R A -2.7089
445 S A -1.7617
446 K A -2.5255
447 Q A -2.2911
448 L A -0.5754
449 L A -0.5021
450 T A -1.4909
451 Q A -1.5963
452 W A -1.1062
453 K A -2.5776
454 S A -3.0073
455 K A -3.6604
456 N A -3.8067
457 E A -3.9359
458 S A -3.0703
459 R A -3.5549
460 K A -2.8876
461 M A -0.6228
462 S A -0.2198
463 L A 0.4354
464 Q A -0.1636
465 V A 1.3925
466 M A 0.8650
467 D A -1.2714
468 T A -1.4019
469 E A -2.3663
470 P A -2.1069
471 E A -2.7868
472 G A -2.0046
473 Q A -1.9830
474 S A -1.3019
475 P A -1.0988
476 P A -1.3592
477 R A -1.7049
478 S A -0.5284
479 I A 0.8852
480 E A -0.7758
481 M A -0.3181
482 R A -1.8669
483 S A -1.0126
484 S A -1.1665
485 S A -1.3034
486 E A -2.1457
487 P A -1.7536
488 S A -1.2382
489 R A -1.2671
490 V A 0.9773
491 G A 0.6508
492 V A 1.2446
493 N A -1.1335
494 G A -1.7706
495 D A -2.9433
496 H A -2.0526
497 H A -0.9474
498 V A 0.8284
499 P A 0.0509
500 G A -1.0662
501 N A -1.8755
502 Q A -0.9171
503 Y A 0.8424
504 L A 1.5629
505 K A 0.0367
506 I A 0.8670
507 Q A -0.8392
508 P A -0.7165
509 G A -0.3660
510 T A 0.3458
511 V A 1.3960
512 P A 0.6332
513 G A -0.1600
514 C A -0.4330
515 N A -1.7156
516 N A -1.6148
517 S A -0.6748
518 M A 0.4531
519 P A -0.1163
520 G A -0.9223
521 G A -1.1038
522 P A -1.0427
523 R A -1.0598
524 V A 1.0677
525 S A 0.6744
526 I A 1.2582
527 Q A -0.7069
528 S A -1.3095
529 R A -2.2623
530 P A -1.6536
531 G A -1.3983
532 S A -0.9650
533 S A -0.4105
534 Q A -0.2642
535 L A 1.7727
536 V A 2.1620
537 H A 0.7897
538 I A 1.3649
539 P A -0.7295
540 E A -2.5695
541 E A -3.0736
542 T A -2.6828
543 Q A -2.8726
544 E A -2.7616
545 N A -1.5315
546 I A 0.6769
547 S A 0.0650
548 T A -0.1845
549 S A -0.7121
550 P A -1.3333
551 K A -2.2747
552 S A -1.6518
553 S A -1.7240
554 S A -1.6253
555 A A -1.6908
556 R A -2.2769
557 A A -1.5092
558 K A -1.9555
559 W A -0.7483
560 L A -1.0397
561 K A -2.4305
562 A A -1.5178
563 A A -1.0572
564 E A -2.0433
565 K A -1.9359
566 T A -0.7319
567 V A 0.6391
568 A A -0.2643
569 C A -0.5042
570 N A -1.7102
571 R A -2.6431
572 S A -2.1578
573 N A -2.7940
574 N A -2.5795
575 Q A -2.5723
576 P A -1.5300
577 R A -1.0227
578 I A 1.3077
579 M A 1.3306
580 Q A 1.0526
581 V A 2.4185
582 I A 2.9093
583 A A 1.9188
584 M A 1.0926
585 S A -0.7641
586 K A -2.5548
587 Q A -2.8728
588 Q A -1.9846
589 G A 0.0072
590 V A 1.7432
591 L A 1.5994
592 Q A -0.1350
593 S A -0.6378
594 S A -1.0445
595 P A -1.4787
596 K A -2.4709
597 N A -2.5493
598 A A -2.0091
599 E A -2.3891
600 G A -1.7804
601 S A -0.5051
602 T A 0.4597
603 V A 1.8060
604 T A 1.1167
605 C A 0.9069
606 T A 0.1658
607 G A -0.1876
608 S A 0.1300
609 I A 1.0410
610 R A -0.7639
611 Y A 0.2088
612 K A -0.9715
613 T A -0.2213
614 L A 0.7465
615 T A -0.6406
616 D A -2.3041
617 H A -2.8294
618 E A -2.9092
619 P A -1.3422
620 S A -0.3117
621 G A 0.6116
622 I A 2.2906
623 V A 2.3949
624 R A 0.0179
625 V A 1.0168
626 E A -1.5848
627 A A -1.3118
628 H A -2.2423
629 P A -2.7360
630 E A -3.3902
631 N A -3.5284
632 N A -3.2643
633 R A -2.5404
634 P A -0.3093
635 I A 2.1607
636 I A 2.8852
637 Q A 1.1661
638 I A 1.8774
639 P A 0.2746
640 S A -0.0929
641 S A -0.5904
642 T A -1.2082
643 E A -2.5141
644 G A -2.3356
645 E A -2.7515
646 G A -1.6986
647 S A -0.9607
648 G A -0.9150
649 S A -0.3031
650 W A 0.2120
651 K A -1.1109
652 W A -0.1912
653 K A -1.6888
654 A A -1.4441
655 P A -1.7992
656 E A -3.0530
657 K A -2.6151
658 S A -1.4700
659 S A -0.8556
660 L A 0.0282
661 R A -1.6507
662 Q A -1.5776
663 T A -0.6229
664 Y A 0.1084
665 E A -0.8661
666 L A 0.2375
667 N A -1.4102
668 D A -2.1474
669 L A -0.7372
670 N A -2.5210
671 R A -3.5476
672 D A -3.3512
673 S A -2.6598
674 E A -2.4912
675 S A -1.3858
676 C A -0.6910
677 E A -1.2751
678 S A -0.5310
679 L A -0.1590
680 K A -2.0934
681 D A -2.1510
682 S A -0.5853
683 F A 1.2015
684 G A 0.2436
685 S A -0.6888
686 G A -2.0950
687 D A -3.3137
688 R A -4.0605
689 K A -4.0450
690 R A -3.5514
691 S A -1.7234
692 N A -1.1919
693 I A 0.3459
694 D A -1.3524
695 S A -1.6925
696 N A -2.8475
697 E A -3.2030
698 H A -2.8581
699 H A -2.5775
700 H A -2.2806
701 H A -1.5078
702 G A -0.2236
703 I A 1.5313
704 T A 1.0440
705 T A 1.0730
706 I A 1.5022
707 R A -0.0755
708 V A 1.4856
709 T A 0.6577
710 P A 0.2978
711 V A 0.8063
712 E A -1.4807
713 G A -1.3991
714 S A -1.1892
715 E A -1.3620
716 I A 0.8210
717 G A -0.3671
718 S A -1.0658
719 E A -1.7365
720 T A -0.2976
721 L A 1.3822
722 S A 1.2980
723 V A 1.8139
724 S A 0.5185
725 S A -0.4083
726 S A -1.6990
727 R A -2.9059
728 D A -2.8519
729 S A -1.2145
730 T A -0.4714
731 L A -0.0620
732 R A -2.4764
733 R A -3.2877
734 K A -3.1934
735 G A -1.8605
736 N A -0.2011
737 I A 2.6463
738 I A 3.8120
739 L A 3.6056
740 I A 2.9702
741 P A 0.0125
742 E A -2.4828
743 R A -3.1865
744 S A -2.2059
745 N A -2.1282
746 S A -1.4383
747 P A -1.8861
748 E A -2.6244
749 N A -2.6100
750 T A -2.2763
751 R A -2.3296
752 N A -0.7511
753 I A 2.2331
754 F A 2.9146
755 Y A 1.6008
756 K A -0.7982
757 G A -1.1287
758 T A -0.8693
759 S A -0.4923
760 P A -0.8497
761 T A -1.2709
762 R A -1.6516
763 A A -0.7859
764 Y A -0.3594
765 K A -2.0278
766 D A -2.4559
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.2941 6.8798 View CSV PDB
4.5 -0.3563 6.8299 View CSV PDB
5.0 -0.4339 6.7603 View CSV PDB
5.5 -0.511 6.6826 View CSV PDB
6.0 -0.5703 6.6089 View CSV PDB
6.5 -0.6011 6.5512 View CSV PDB
7.0 -0.6043 6.5173 View CSV PDB
7.5 -0.5895 6.5024 View CSV PDB
8.0 -0.5646 6.4968 View CSV PDB
8.5 -0.5322 6.5034 View CSV PDB
9.0 -0.4921 6.5224 View CSV PDB