Project name: 978b13bd048395

Status: done

Started: 2026-10-21 12:34:58
Settings
Chain sequence(s) MGDPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCATKDTNAKYNSRAAQLYREKIKTLATQATRRHGTDLWLDSCAAPPVSPPPKEEDFFASHASLEVSGAMQASAQPESASSTPWGLETTPEKHEGGPGQGPSVEGLNTPGKAAPEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQEDLARGAPKEESIVSSLRLAYKDLEISRKKDERLNLSGQKKVEAERLGMGFGSCRSGISHSVTSDMQTIEQESPTLAKPRRKYQEDPEDSYFSSSSKWSEQSSRYFDDPMELRSSSFSSWDDGADSYWKKDSSRDPEPAMRSTGSSDRPSARRKPEYEPIGSTDEAQKKFGNVKAISSDMYFGIQAQTDFETRARLERLSTSSSISSADLFDEQRKQTAGNYNLSNVLPNAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:14:35)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/978b13bd048395/tmp/folded.pdb                 (00:14:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:22:03)
Show buried residues

Minimal score value
-5.4068
Maximal score value
2.8194
Average score
-1.018
Total score value
-532.4367

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3708
2 G A -0.8617
3 D A -2.1822
4 P A 0.0000
5 S A -1.9662
6 K A -2.5014
7 Q A -1.9015
8 D A -1.6042
9 I A 0.0000
10 L A -1.3062
11 A A -1.0721
12 I A 0.0000
13 F A 0.0000
14 K A -2.1260
15 R A -1.9203
16 L A 0.0000
17 R A -1.5557
18 S A -1.0913
19 V A -0.4593
20 P A -0.5207
21 T A -0.4028
22 N A 0.0000
23 K A -1.7040
24 V A -0.8178
25 C A 0.0000
26 F A 0.2908
27 D A -0.5470
28 C A -0.0874
29 G A -0.3336
30 A A -0.8502
31 K A -2.2736
32 N A -2.3212
33 P A 0.0000
34 S A -0.4523
35 W A 0.1159
36 A A 0.0000
37 S A 0.0000
38 I A 0.0000
39 S A -0.6225
40 Y A 0.0000
41 G A 0.0000
42 V A 0.0000
43 F A 0.0000
44 L A 0.0000
45 C A 0.1618
46 I A 1.1868
47 D A -0.7851
48 C A -0.3164
49 S A 0.0000
50 G A -0.7447
51 S A -1.1034
52 H A 0.0000
53 R A -0.7866
54 S A -0.7070
55 L A -0.4408
56 G A 0.2639
57 V A 1.3789
58 H A 0.0987
59 L A -0.0597
60 S A 0.0000
61 F A 1.0221
62 I A 0.4871
63 R A -0.3618
64 S A 0.0000
65 T A 0.0000
66 E A -1.1372
67 L A 0.2762
68 D A -0.8089
69 S A -1.5998
70 N A -1.8747
71 W A 0.0000
72 S A -0.7330
73 W A 0.0000
74 F A -0.1863
75 Q A -0.0573
76 L A 0.0000
77 R A 0.0000
78 C A 0.0000
79 M A 0.0000
80 Q A 0.0000
81 V A -0.2159
82 G A 0.0000
83 G A -0.3842
84 N A 0.0000
85 S A -0.7797
86 N A -1.3426
87 A A 0.0000
88 S A -0.9628
89 S A -1.2871
90 F A -1.0161
91 F A 0.0000
92 H A -1.8194
93 Q A -1.9303
94 H A -1.5509
95 G A -1.4807
96 C A 0.0000
97 A A -1.1785
98 T A -1.7435
99 K A -2.7300
100 D A -3.0875
101 T A -2.0638
102 N A -2.3099
103 A A -1.9408
104 K A -1.9626
105 Y A 0.0000
106 N A -1.7138
107 S A -1.7176
108 R A -2.2484
109 A A 0.0000
110 A A 0.0000
111 Q A -2.0365
112 L A -1.0402
113 Y A 0.0000
114 R A -2.1879
115 E A -3.0014
116 K A -2.2045
117 I A 0.0000
118 K A -2.7223
119 T A -1.7780
120 L A -1.0756
121 A A 0.0000
122 T A -1.6031
123 Q A -2.2541
124 A A 0.0000
125 T A -1.8996
126 R A -3.0943
127 R A -3.3643
128 H A -2.2566
129 G A -1.5535
130 T A -1.3306
131 D A -1.7189
132 L A -0.2999
133 W A -0.6242
134 L A -0.7183
135 D A -1.6832
136 S A -0.9203
137 C A -0.5537
138 A A -0.5463
139 A A 0.0631
140 P A 0.0986
141 P A 0.3207
142 V A 1.3913
143 S A 0.3039
144 P A -0.4324
145 P A -1.1875
146 P A -2.0538
147 K A -3.6967
148 E A -3.8548
149 E A -3.3500
150 D A -2.0165
151 F A 0.9711
152 F A 1.7076
153 A A 0.4208
154 S A 0.0630
155 H A 0.2146
156 A A 0.2644
157 S A 0.2616
158 L A 0.6660
159 E A -0.3825
160 V A 0.9717
161 S A 0.2014
162 G A -0.0526
163 A A 0.2390
164 M A 0.3966
165 Q A -0.6935
166 A A -0.3950
167 S A -0.5704
168 A A -0.6645
169 Q A -1.7061
170 P A -1.7828
171 E A -2.2802
172 S A -1.1493
173 A A -0.5634
174 S A -0.3428
175 S A -0.3979
176 T A -0.1577
177 P A 0.2740
178 W A 1.1273
179 G A 0.5188
180 L A 0.6736
181 E A -1.2300
182 T A -1.0274
183 T A -1.0909
184 P A -1.5418
185 E A -3.0185
186 K A -3.5257
187 H A -3.2503
188 E A -3.0009
189 G A -1.8659
190 G A -1.4084
191 P A -1.1385
192 G A -1.4794
193 Q A -1.8743
194 G A -1.3417
195 P A -0.6935
196 S A -0.2384
197 V A 0.7918
198 E A -1.0962
199 G A -0.5162
200 L A 0.4933
201 N A -0.9361
202 T A -0.6104
203 P A -0.9878
204 G A -1.4476
205 K A -1.9436
206 A A -0.8756
207 A A -0.8249
208 P A -0.8459
209 E A -1.1521
210 V A 0.7145
211 S A 0.6548
212 S A 1.4414
213 I A 2.4706
214 I A 1.6585
215 K A -1.4022
216 K A -2.9515
217 K A -3.2492
218 P A -2.2554
219 N A -2.3372
220 Q A -2.2016
221 A A -2.0408
222 K A -2.8652
223 K A -2.4278
224 G A -1.0378
225 L A 0.7236
226 G A -0.3628
227 A A -1.0701
228 K A -2.7439
229 K A -2.8069
230 G A -1.4681
231 S A -0.3846
232 L A 1.0006
233 G A -0.3277
234 A A -0.6940
235 Q A -1.5382
236 K A -1.7439
237 L A 0.1867
238 T A -0.3650
239 N A -1.1174
240 T A -0.3433
241 S A -0.0311
242 F A 0.0006
243 T A -1.3555
244 E A -2.3365
245 I A -0.5534
246 E A -2.6876
247 K A -3.2740
248 Q A -2.5900
249 A A -2.3115
250 Q A -3.6071
251 A A -2.7166
252 V A -2.5324
253 D A -4.5194
254 K A -5.1890
255 R A -5.1626
256 K A -5.3111
257 E A -5.4068
258 Q A -4.7808
259 E A -4.9534
260 D A -4.3266
261 L A -1.8437
262 A A -2.0518
263 R A -3.2662
264 G A -2.1503
265 A A -1.8305
266 P A -2.3275
267 K A -3.1045
268 E A -2.8648
269 E A -2.5132
270 S A -1.2999
271 I A 0.5132
272 V A -0.0671
273 S A -0.0296
274 S A 0.6070
275 L A 0.9058
276 R A -0.5655
277 L A 0.6184
278 A A 0.4159
279 Y A 0.5219
280 K A -1.2141
281 D A -1.2954
282 L A 0.0661
283 E A -1.4944
284 I A -0.8087
285 S A -2.2367
286 R A -3.8610
287 K A -3.5874
288 K A -3.9705
289 D A -4.3739
290 E A -4.2448
291 R A -3.5708
292 L A -1.5531
293 N A -2.1390
294 L A -0.1959
295 S A -0.9640
296 G A -1.3816
297 Q A -2.5651
298 K A -3.3710
299 K A -3.4160
300 V A -1.3270
301 E A -2.5079
302 A A 0.0000
303 E A -2.7596
304 R A -2.2549
305 L A -0.0765
306 G A -0.5858
307 M A 0.3034
308 G A 0.7075
309 F A 1.5070
310 G A 0.3098
311 S A -0.1030
312 C A -0.5078
313 R A -1.7752
314 S A -0.7523
315 G A 0.0445
316 I A 1.3908
317 S A 0.0978
318 H A -0.3444
319 S A 0.2675
320 V A 1.1844
321 T A 0.2600
322 S A -0.5826
323 D A -1.4564
324 M A -0.0256
325 Q A -0.9348
326 T A -0.2327
327 I A 0.3724
328 E A -2.0804
329 Q A -2.5247
330 E A -2.7929
331 S A -1.5923
332 P A -0.6248
333 T A 0.3222
334 L A 1.0536
335 A A -0.1153
336 K A -1.7939
337 P A -2.3296
338 R A -3.6438
339 R A -3.4208
340 K A -2.5020
341 Y A -1.0370
342 Q A -2.1096
343 E A -3.1340
344 D A -3.4678
345 P A -2.6832
346 E A -3.1806
347 D A -2.5494
348 S A -0.5688
349 Y A 1.7720
350 F A 2.4184
351 S A 0.8273
352 S A -0.0938
353 S A -0.8406
354 S A -1.0491
355 K A -1.2978
356 W A -0.1873
357 S A -1.1284
358 E A -2.3440
359 Q A -2.3053
360 S A -1.7446
361 S A -1.1493
362 R A -0.8344
363 Y A 0.7902
364 F A 0.8445
365 D A -1.5514
366 D A -2.2507
367 P A -1.2137
368 M A -0.2539
369 E A -1.0142
370 L A -0.0765
371 R A -1.6029
372 S A -0.8844
373 S A -0.2612
374 S A 0.3154
375 F A 1.6217
376 S A 0.8220
377 S A 0.1098
378 W A -0.3008
379 D A -2.3200
380 D A -2.7408
381 G A -2.0241
382 A A -1.4201
383 D A -1.6268
384 S A -0.4278
385 Y A 0.9546
386 W A 0.4914
387 K A -2.0913
388 K A -3.1487
389 D A -3.1493
390 S A -1.9498
391 S A -2.1551
392 R A -3.0827
393 D A -3.3565
394 P A -2.5248
395 E A -2.4009
396 P A -1.0837
397 A A -0.3334
398 M A -0.0243
399 R A -1.3705
400 S A -1.0094
401 T A -0.8454
402 G A -0.7117
403 S A -0.9444
404 S A -1.6506
405 D A -2.9739
406 R A -3.0271
407 P A -1.7836
408 S A -1.3856
409 A A -1.6522
410 R A -3.1876
411 R A -3.8857
412 K A -3.4897
413 P A -2.4753
414 E A -2.5835
415 Y A -0.5409
416 E A -1.3495
417 P A -0.2136
418 I A 1.2807
419 G A -0.1207
420 S A -0.7845
421 T A -1.6201
422 D A -3.5860
423 E A -3.8694
424 A A -2.5281
425 Q A -3.7864
426 K A -4.3525
427 K A -3.4667
428 F A -1.9591
429 G A -2.5994
430 N A -2.0600
431 V A -0.7400
432 K A -1.3986
433 A A -0.2975
434 I A 0.8638
435 S A 0.5011
436 S A 0.6657
437 D A 0.4283
438 M A 1.5063
439 Y A 1.9652
440 F A 2.4539
441 G A 1.2791
442 I A 1.3529
443 Q A -0.6078
444 A A -0.7810
445 Q A -1.4584
446 T A -1.2241
447 D A -1.3559
448 F A -0.2855
449 E A -1.3272
450 T A -1.5283
451 R A -2.3625
452 A A -1.7785
453 R A -1.7977
454 L A -1.1149
455 E A -2.9978
456 R A -2.8594
457 L A -1.3681
458 S A -1.0681
459 T A -0.6967
460 S A -0.4387
461 S A -0.1659
462 S A -0.0125
463 I A 0.6328
464 S A -0.0234
465 S A -0.0633
466 A A -0.6185
467 D A -1.1766
468 L A -0.4862
469 F A -0.0717
470 D A -2.5775
471 E A -3.4673
472 Q A -3.8384
473 R A -4.4411
474 K A -3.7823
475 Q A -2.7794
476 T A -1.6875
477 A A -0.8657
478 G A -1.0736
479 N A -1.0055
480 Y A 0.4235
481 N A -0.5223
482 L A 1.2541
483 S A 0.3709
484 N A -0.0119
485 V A 2.1173
486 L A 1.8955
487 P A 0.0653
488 N A -1.1402
489 A A -0.8313
490 P A -1.1722
491 D A -1.3387
492 M A 0.0760
493 A A -0.6351
494 Q A -1.1831
495 F A 0.4387
496 K A -1.4802
497 Q A -1.8796
498 G A -0.6860
499 V A 0.5785
500 R A -1.2336
501 S A -0.0442
502 V A 1.1179
503 A A 0.2828
504 G A -0.3155
505 K A -0.6266
506 L A 1.3953
507 S A 1.1980
508 V A 2.3826
509 F A 2.8194
510 A A 1.4040
511 N A 0.1144
512 G A 0.8102
513 V A 1.8789
514 M A 1.2215
515 T A -0.1458
516 S A -0.0997
517 I A 0.4599
518 Q A -1.3676
519 D A -2.5452
520 R A -2.1829
521 Y A -0.3871
522 G A -1.0466
523 S A -0.7651
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.7439 5.3732 View CSV PDB
4.5 -0.8536 5.2938 View CSV PDB
5.0 -0.9847 5.2938 View CSV PDB
5.5 -1.112 5.2938 View CSV PDB
6.0 -1.2107 5.2938 View CSV PDB
6.5 -1.2651 5.2938 View CSV PDB
7.0 -1.2763 5.2938 View CSV PDB
7.5 -1.2585 5.2938 View CSV PDB
8.0 -1.2242 5.2938 View CSV PDB
8.5 -1.177 5.2938 View CSV PDB
9.0 -1.1153 5.2938 View CSV PDB