Project name: 98ed617165735a

Status: done

Started: 2026-10-21 12:34:30
Settings
Chain sequence(s) MFSWVSKDARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRRPFRKLNAFGNAFLNRFMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSLGKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISSGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLMVMVRQEESLMPSQAVKGGAFDGTMNGPFGHGYGEGAGEGIDDVEWVVGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELPADLPPHLIPPSKRRHE input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:27:38)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/98ed617165735a/tmp/folded.pdb                 (00:27:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:32:47)
Show buried residues

Minimal score value
-4.6064
Maximal score value
2.8456
Average score
-0.9506
Total score value
-507.6201

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.9597
2 F A 2.8456
3 S A 2.0790
4 W A 2.0922
5 V A 1.6932
6 S A -0.3958
7 K A -2.3129
8 D A -3.1403
9 A A -3.1105
10 R A -4.1007
11 R A -4.5997
12 K A -4.3907
13 K A -4.6064
14 E A -3.7473
15 P A -2.4086
16 E A -2.2096
17 L A -0.0131
18 F A -0.3050
19 Q A -1.0131
20 T A -0.6873
21 V A 0.0000
22 A A -1.2932
23 E A -1.3137
24 G A 0.0000
25 L A 0.0000
26 R A -1.8331
27 Q A -1.6504
28 L A 0.0000
29 Y A 0.0000
30 A A -1.1314
31 Q A -1.4778
32 K A -1.1964
33 L A 0.0000
34 L A -0.5255
35 P A -0.9074
36 L A 0.0000
37 E A 0.0000
38 E A -2.1840
39 H A -1.3214
40 Y A 0.0000
41 R A -1.7912
42 F A 0.0000
43 H A -1.4892
44 E A -1.2154
45 F A 0.0000
46 H A -0.6099
47 S A -0.6874
48 P A -0.7649
49 A A -0.8199
50 L A -1.0042
51 E A -2.9456
52 D A -2.9529
53 A A 0.0000
54 D A -2.0657
55 F A 0.0000
56 D A -2.9815
57 N A -1.8970
58 K A -1.4518
59 P A 0.0000
60 M A 0.0000
61 V A 0.0000
62 L A 0.0000
63 L A 0.0000
64 V A 0.0000
65 G A 0.0000
66 Q A -0.3490
67 Y A -0.1889
68 S A -0.4003
69 T A 0.0000
70 G A 0.0000
71 K A 0.0000
72 T A 0.0000
73 T A -0.5197
74 F A 0.0000
75 I A 0.0000
76 R A -2.0127
77 H A -1.6151
78 L A 0.0000
79 I A 0.0000
80 E A -2.9379
81 Q A -2.9369
82 D A -2.8952
83 F A 0.0000
84 P A -0.7550
85 G A -0.3026
86 M A -0.5521
87 R A -0.6535
88 I A 0.3600
89 G A -0.5047
90 P A -0.9786
91 E A -1.9080
92 P A -1.3156
93 T A -0.9701
94 T A -0.9156
95 D A -1.4573
96 S A -1.0352
97 F A 0.0000
98 I A 0.0000
99 A A 0.0000
100 V A 0.0000
101 M A 0.0000
102 H A -1.3507
103 G A 0.0000
104 P A -0.8728
105 T A -1.1551
106 E A -1.9298
107 G A -0.5570
108 V A 0.8840
109 V A 0.7775
110 P A -0.2881
111 G A 0.0000
112 N A -1.7013
113 A A -0.1057
114 L A 0.0000
115 V A 0.0000
116 V A 0.3729
117 D A -0.7192
118 P A -1.6559
119 R A -2.8557
120 R A -2.1337
121 P A 0.0000
122 F A 0.0000
123 R A -2.3246
124 K A -1.7948
125 L A 0.0000
126 N A -2.0026
127 A A -1.0191
128 F A -0.8570
129 G A -1.3415
130 N A -2.1997
131 A A -1.3121
132 F A 0.0000
133 L A 0.0000
134 N A -2.2150
135 R A -1.8970
136 F A 0.0000
137 M A -0.1315
138 C A 0.0000
139 A A 0.0000
140 Q A -0.6789
141 L A 0.0000
142 P A -1.1954
143 N A 0.0000
144 P A -1.3400
145 V A 0.0000
146 L A 0.0000
147 D A -2.3213
148 S A -1.4933
149 I A 0.0000
150 S A 0.0000
151 I A 0.0000
152 I A 0.0000
153 D A 0.0000
154 T A 0.0000
155 P A 0.0000
156 G A 0.0000
157 I A 0.0000
158 L A -1.2910
159 S A -1.8779
160 G A -2.6563
161 E A -3.6547
162 K A -3.2878
163 Q A -2.9057
164 R A -2.6588
165 I A -0.2576
166 S A -0.6229
167 R A -1.1372
168 G A -0.9192
169 Y A -1.2609
170 D A -1.8273
171 F A 0.0000
172 A A -1.2333
173 A A -0.8805
174 V A 0.0000
175 L A 0.0000
176 E A -1.6770
177 W A 0.0000
178 F A 0.0000
179 A A 0.0000
180 E A -1.1036
181 R A -0.6905
182 V A 0.0000
183 D A 0.0000
184 R A 0.0000
185 I A 0.0000
186 I A 0.0000
187 L A 0.0000
188 L A 0.0000
189 F A 0.0000
190 D A 0.0000
191 A A 0.0000
192 H A -2.1418
193 K A -2.5779
194 L A -1.5535
195 D A -2.3732
196 I A -1.1476
197 S A -1.7527
198 D A -2.7277
199 E A 0.0000
200 F A 0.0000
201 S A -1.8065
202 E A -2.7573
203 V A 0.0000
204 I A 0.0000
205 K A -2.5585
206 A A -1.9295
207 L A 0.0000
208 K A -3.5887
209 N A -3.2036
210 H A -2.7106
211 E A -3.0250
212 D A -2.7207
213 K A 0.0000
214 I A 0.0000
215 R A -0.9614
216 V A 0.0000
217 V A 0.0000
218 L A 0.0000
219 N A 0.0000
220 K A -0.4688
221 A A 0.0000
222 D A 0.0000
223 Q A -0.5071
224 I A 0.0000
225 E A -2.4841
226 T A -2.0650
227 Q A -2.2077
228 Q A -2.2553
229 L A 0.0000
230 M A -0.7101
231 R A -1.8140
232 V A 0.0000
233 Y A 0.2866
234 G A -0.0051
235 A A -0.0011
236 L A 0.0000
237 M A 0.7413
238 W A 0.7572
239 S A -0.1241
240 L A 0.0000
241 G A -1.0145
242 K A -1.8495
243 I A -1.5214
244 I A -1.6923
245 N A -2.4102
246 T A -1.5648
247 P A -1.0151
248 E A -1.4179
249 V A 0.7284
250 V A -0.2138
251 R A -0.5099
252 V A 0.0000
253 Y A 0.0000
254 I A 0.0000
255 G A 0.0000
256 S A -0.4300
257 F A 0.0000
258 W A -0.5766
259 S A -0.9954
260 H A -0.8683
261 P A -0.1842
262 L A 0.1223
263 L A 1.0956
264 I A -0.2045
265 P A -1.4239
266 D A -2.5986
267 N A 0.0000
268 R A -3.0859
269 K A -3.0715
270 L A -1.5265
271 F A 0.0000
272 E A -2.0408
273 A A -1.5138
274 E A -1.2875
275 E A -1.3734
276 Q A -1.3851
277 D A -1.4664
278 L A 0.0000
279 F A 0.0000
280 K A -1.9603
281 D A -1.2992
282 I A 0.0000
283 Q A 0.0000
284 S A -1.1206
285 L A 0.0000
286 P A -0.7505
287 R A -1.0715
288 N A -0.9918
289 A A -0.6643
290 A A -0.7312
291 L A -0.5398
292 R A -0.6965
293 K A -1.0862
294 L A 0.0000
295 N A -1.1825
296 D A -1.5184
297 L A 0.0000
298 I A -1.0107
299 K A -2.2986
300 R A 0.0000
301 A A 0.0000
302 R A -1.4720
303 L A -0.6902
304 A A 0.0000
305 K A -0.6853
306 V A 0.0000
307 H A 0.0000
308 A A 0.0000
309 Y A -0.0723
310 I A 0.0000
311 I A 0.0000
312 S A 0.0000
313 S A -1.1925
314 L A 0.0000
315 K A -2.1651
316 K A -2.5900
317 E A -2.3086
318 M A -1.5767
319 P A -0.7676
320 N A -0.4910
321 V A 1.9285
322 F A 1.9162
323 G A -0.0473
324 K A -1.8857
325 E A -3.0595
326 S A -2.3835
327 K A -2.6987
328 K A -3.5630
329 K A -4.1042
330 E A -3.8601
331 L A 0.0000
332 V A 0.0000
333 N A -3.4679
334 N A -2.6838
335 L A 0.0000
336 G A -1.9819
337 E A -2.9921
338 I A 0.0000
339 Y A 0.0000
340 Q A -3.2434
341 K A -3.9625
342 I A 0.0000
343 E A -3.3620
344 R A -4.1986
345 E A -3.9024
346 H A -2.7141
347 Q A -2.8972
348 I A -1.9746
349 S A -1.1607
350 S A -1.0876
351 G A -0.6872
352 D A -1.0244
353 F A -0.3436
354 P A -0.4439
355 S A -0.9314
356 L A -1.2537
357 R A -2.7868
358 K A -2.3678
359 M A 0.0000
360 Q A -2.5598
361 E A -2.9148
362 L A -1.4808
363 L A 0.0000
364 Q A -2.2576
365 T A -1.1479
366 Q A -1.6027
367 D A -2.4052
368 F A 0.0000
369 S A -1.9210
370 K A -2.4487
371 F A 0.0000
372 Q A -1.5208
373 A A -0.9790
374 L A -0.6648
375 K A -1.6419
376 P A -1.8288
377 K A -2.7216
378 L A -1.7740
379 L A 0.0000
380 D A -3.1216
381 T A -2.0453
382 V A 0.0000
383 D A -2.3812
384 D A -2.0037
385 M A 0.0000
386 L A -0.8625
387 A A -1.0345
388 N A -1.7118
389 D A 0.0000
390 I A 0.0000
391 A A -0.3105
392 R A -0.7925
393 L A 0.0000
394 M A 0.4521
395 V A 0.8891
396 M A -0.1955
397 V A 0.0000
398 R A -1.0638
399 Q A -1.1445
400 E A -0.8388
401 E A -0.8535
402 S A -0.4642
403 L A 0.8028
404 M A 0.0996
405 P A -0.2638
406 S A -0.8965
407 Q A -1.6751
408 A A -1.3738
409 V A 0.0000
410 K A -2.7061
411 G A 0.0000
412 G A -1.9983
413 A A -1.6763
414 F A 0.0000
415 D A -2.6806
416 G A -1.5172
417 T A -1.1812
418 M A -0.9664
419 N A -1.3697
420 G A -0.5485
421 P A 0.1485
422 F A 1.2628
423 G A -0.0237
424 H A -1.0581
425 G A -1.1439
426 Y A -0.4098
427 G A -1.1544
428 E A -1.8507
429 G A 0.0000
430 A A -1.1057
431 G A -1.0308
432 E A -1.6697
433 G A -1.2502
434 I A -0.6874
435 D A -1.7353
436 D A -1.3175
437 V A 0.1865
438 E A -1.6619
439 W A 0.0000
440 V A 0.0000
441 V A 0.0000
442 G A -1.9256
443 K A -2.6987
444 D A -2.2577
445 K A -1.9081
446 P A -1.6056
447 T A -1.4109
448 Y A 0.0000
449 D A -1.1170
450 E A -1.4481
451 I A -0.2319
452 F A 0.0000
453 Y A 0.8234
454 T A 0.2904
455 L A 0.0992
456 S A 0.4392
457 P A 0.4234
458 V A 1.0076
459 N A -0.7405
460 G A -0.5157
461 K A -0.2535
462 I A 0.0000
463 T A -0.2284
464 G A -0.7269
465 A A -1.0158
466 N A -1.4814
467 A A 0.0000
468 K A -1.9523
469 K A -2.3630
470 E A -1.6274
471 M A 0.0000
472 V A -0.8280
473 K A -2.0696
474 S A -1.1779
475 K A -1.7700
476 L A -0.8102
477 P A -0.8597
478 N A -1.4460
479 T A -0.7844
480 V A -0.8866
481 L A 0.0000
482 G A -1.2017
483 K A -1.5104
484 I A 0.0000
485 W A -1.1451
486 K A -2.4071
487 L A 0.0000
488 A A 0.0000
489 D A 0.0000
490 V A -1.2523
491 D A -2.2888
492 K A -3.0707
493 D A -2.5613
494 G A -1.6483
495 L A -0.7347
496 L A 0.0000
497 D A -0.6765
498 D A -0.9181
499 E A -0.6850
500 E A 0.0000
501 F A 0.0000
502 A A 0.0000
503 L A 0.0000
504 A A 0.0000
505 N A -0.7060
506 H A 0.0000
507 L A 0.0000
508 I A 0.0000
509 K A -1.3872
510 V A 0.0000
511 K A -1.5482
512 L A -0.8949
513 E A -2.3311
514 G A -1.8149
515 H A -2.2570
516 E A -2.2625
517 L A 0.0000
518 P A -1.1296
519 A A -1.1011
520 D A -2.0083
521 L A -0.8583
522 P A -0.3507
523 P A -0.3579
524 H A -0.5195
525 L A 0.0000
526 I A -0.1632
527 P A 0.0000
528 P A -1.1451
529 S A -0.9650
530 K A -1.3775
531 R A -2.2947
532 R A -3.2690
533 H A -3.0550
534 E A -2.9311
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.7944 5.3574 View CSV PDB
4.5 -0.8723 5.3574 View CSV PDB
5.0 -0.9665 5.3574 View CSV PDB
5.5 -1.0593 5.3574 View CSV PDB
6.0 -1.1319 5.3574 View CSV PDB
6.5 -1.1705 5.3574 View CSV PDB
7.0 -1.1748 5.3574 View CSV PDB
7.5 -1.1557 5.3574 View CSV PDB
8.0 -1.1234 5.3574 View CSV PDB
8.5 -1.081 5.3574 View CSV PDB
9.0 -1.0281 5.3574 View CSV PDB