Project name: 9b805220605fbb

Status: done

Started: 2026-10-21 12:27:13
Settings
Chain sequence(s) MSSSYAKNGAADGPHSPSSQVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGCSHDSRHRL input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:07:28)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/9b805220605fbb/tmp/folded.pdb                 (00:07:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:56)
Show buried residues

Minimal score value
-4.4765
Maximal score value
3.2474
Average score
-1.0982
Total score value
-569.9801

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8654
2 S A 0.1869
3 S A 0.0745
4 S A 0.3719
5 Y A 0.8512
6 A A -0.3154
7 K A -2.1451
8 N A -2.3427
9 G A -1.4036
10 A A -0.7980
11 A A -0.9579
12 D A -2.0335
13 G A -1.6956
14 P A -1.4708
15 H A -1.3915
16 S A -0.9146
17 P A -0.7450
18 S A -0.5902
19 S A -0.5015
20 Q A -0.4840
21 V A 0.7194
22 A A -0.3808
23 R A -1.7049
24 G A -1.2035
25 T A -0.8263
26 T A -0.8315
27 T A -1.3867
28 R A -3.1437
29 R A -3.2762
30 S A -2.2766
31 R A -2.4706
32 L A -0.8735
33 K A -2.5564
34 R A -3.0461
35 S A -2.4913
36 D A -2.7558
37 G A -1.6971
38 S A -0.9435
39 T A -0.3714
40 T A -0.3292
41 S A -0.3703
42 T A 0.1083
43 S A 1.2669
44 F A 2.9558
45 I A 3.2474
46 L A 1.6836
47 R A -1.0887
48 Q A -2.0041
49 G A -1.6178
50 S A -1.2201
51 A A -1.0162
52 D A -1.6529
53 S A -0.4959
54 Y A 0.4039
55 T A -0.3390
56 S A -0.8984
57 R A -2.2057
58 P A -1.8498
59 S A -1.9050
60 D A -2.3958
61 S A -1.4716
62 D A -1.8724
63 V A -0.6291
64 S A -1.5937
65 L A -1.2258
66 E A -3.0508
67 E A -3.6009
68 D A -3.4337
69 R A -3.9930
70 E A -3.8056
71 A A -2.8841
72 I A -2.1526
73 R A -4.0570
74 Q A -3.8881
75 E A -4.0920
76 R A -3.9029
77 E A -3.2977
78 Q A -3.1961
79 Q A -3.0827
80 A A 0.0000
81 A A -1.7502
82 I A -1.4140
83 Q A -1.8526
84 L A -1.7792
85 E A -2.9785
86 R A -3.1758
87 A A 0.0000
88 K A -3.0066
89 S A -2.0401
90 K A -1.9871
91 P A -0.9800
92 V A -0.4565
93 A A -0.3524
94 F A 0.6201
95 A A 0.0000
96 V A 0.0000
97 K A -0.5399
98 T A 0.0000
99 N A -0.7396
100 V A -0.5967
101 S A -1.2230
102 Y A 0.0000
103 C A 0.4664
104 G A 0.0687
105 A A 0.4558
106 L A 0.9323
107 D A -0.7127
108 E A -2.4080
109 D A -2.5979
110 V A -1.3698
111 P A -1.6722
112 V A -1.2720
113 P A -0.9814
114 S A -0.3620
115 T A -0.3276
116 A A -0.2521
117 I A 0.0000
118 S A -0.1844
119 F A 0.0000
120 D A -2.3489
121 A A -1.8594
122 K A -2.3924
123 D A -1.8409
124 F A -0.6661
125 L A 0.0000
126 H A 0.0000
127 I A 0.0000
128 K A -0.8587
129 E A -1.1663
130 K A -2.1391
131 Y A -1.2546
132 N A -1.5908
133 N A -1.8024
134 D A -1.6895
135 W A 0.0000
136 W A -1.0676
137 I A 0.0000
138 G A 0.0000
139 R A 0.0000
140 L A -0.8747
141 V A 0.0000
142 K A -2.8967
143 E A -3.4162
144 G A -2.3210
145 C A -1.9356
146 E A -2.5045
147 I A 0.0000
148 G A 0.0000
149 F A 0.0000
150 I A 0.0000
151 P A 0.0000
152 S A 0.0000
153 P A -0.3047
154 L A -0.0553
155 R A -1.0220
156 L A 0.0000
157 E A -1.9494
158 N A -1.7119
159 I A -1.3267
160 R A -2.2844
161 I A -1.4690
162 Q A -3.0347
163 Q A -3.7588
164 E A -4.1891
165 Q A -4.0576
166 K A -4.4765
167 R A -4.2987
168 G A -3.6862
169 R A -3.1552
170 F A -0.7635
171 H A -1.7042
172 G A -1.9111
173 G A -1.7625
174 K A -2.4206
175 S A -1.4294
176 S A -1.2040
177 G A -1.5349
178 N A -1.6950
179 S A -1.0824
180 S A -0.7234
181 S A -0.1449
182 S A 0.3942
183 L A 0.7546
184 G A -0.5929
185 E A -0.8671
186 M A 0.8383
187 V A 1.6928
188 S A 0.8716
189 G A 0.1633
190 T A 0.3407
191 F A 0.9019
192 R A -0.9928
193 A A -0.4533
194 T A -0.5966
195 P A -0.5394
196 T A -0.2522
197 T A -0.3758
198 T A -0.6320
199 A A -1.4295
200 K A -2.9051
201 Q A -3.4383
202 K A -3.5608
203 Q A -2.8833
204 K A -2.3834
205 V A -0.3734
206 T A -0.7741
207 E A -1.5462
208 H A -0.6882
209 I A 0.9291
210 P A 0.2848
211 P A 0.0873
212 Y A 0.0000
213 D A 0.0000
214 V A 1.6450
215 V A 0.0000
216 P A 0.0000
217 S A 0.0000
218 M A 0.0000
219 R A -0.1843
220 P A 0.0000
221 V A 0.0000
222 V A 0.0000
223 L A 0.0000
224 V A 0.0000
225 G A 0.0000
226 P A 0.0000
227 S A 0.0000
228 L A 0.1588
229 K A -0.5897
230 G A -0.7157
231 Y A -0.5172
232 E A -0.7316
233 V A 0.0000
234 T A 0.0000
235 D A -1.0061
236 M A -0.4821
237 M A -0.1757
238 Q A 0.0000
239 K A -1.8762
240 A A -0.7754
241 L A 0.0000
242 F A 0.0000
243 D A -2.0609
244 F A -1.7550
245 L A 0.0000
246 K A -2.8338
247 H A -2.9904
248 R A -2.8532
249 F A 0.0000
250 D A -3.1414
251 G A -1.9667
252 R A -1.6705
253 I A -1.1500
254 S A -0.3028
255 I A -0.1868
256 T A -0.7029
257 R A -2.0515
258 V A 0.0000
259 T A -1.2407
260 A A 0.0000
261 D A -0.9023
262 I A 0.0000
263 S A -0.1594
264 L A -0.1647
265 A A 0.0000
266 K A -1.0714
267 R A -1.0375
268 S A -1.6580
269 V A -1.0065
270 L A -1.1626
271 N A -1.9457
272 N A -1.8240
273 P A -1.3480
274 S A -0.9940
275 K A -1.1709
276 R A -0.8321
277 A A -0.2613
278 I A 0.7681
279 I A -0.5959
280 E A -2.3325
281 R A -2.4805
282 S A -2.1534
283 N A -2.5540
284 T A -2.1635
285 R A -2.2757
286 S A 0.0000
287 S A -1.4243
288 L A 0.0000
289 A A -0.8152
290 E A -1.8241
291 V A 0.0000
292 Q A -1.4061
293 S A -1.6484
294 E A -1.6831
295 I A 0.0000
296 E A -2.6776
297 R A -2.1069
298 I A 0.0000
299 F A -1.6124
300 E A -2.7493
301 L A -1.3444
302 A A 0.0000
303 R A -2.2993
304 S A -1.3686
305 L A -0.8928
306 Q A -0.8463
307 L A 0.0000
308 V A 0.0000
309 V A 0.0000
310 L A 0.0000
311 D A -1.5641
312 A A 0.0000
313 D A -1.3941
314 T A -0.6724
315 I A 0.0000
316 N A -0.6171
317 H A -0.4002
318 P A 0.0000
319 A A 0.1671
320 Q A -0.2426
321 L A 0.0000
322 I A 0.8909
323 K A -0.7129
324 T A 0.0000
325 S A 0.1663
326 L A 0.0000
327 A A 0.1298
328 P A 0.0000
329 I A 0.0000
330 I A 0.0000
331 V A 0.0000
332 H A 0.0000
333 V A -0.1634
334 K A -0.9500
335 V A -0.6415
336 S A -0.8967
337 S A -0.6442
338 P A -1.2493
339 K A -1.8165
340 V A -0.5894
341 L A 0.0000
342 Q A -1.9601
343 R A -2.6285
344 L A -1.4722
345 I A 0.0000
346 K A -3.1256
347 S A -2.1896
348 R A -2.4495
349 G A -2.3781
350 K A -2.9495
351 S A -2.0395
352 Q A -2.0727
353 S A -2.8413
354 K A -2.6808
355 H A -1.5925
356 L A -1.3509
357 N A -0.8763
358 V A 0.2119
359 Q A 0.0000
360 L A -0.2142
361 V A 0.4360
362 A A 0.0000
363 A A -0.8942
364 D A -1.8001
365 K A -2.1779
366 L A 0.0000
367 A A -1.4972
368 Q A -2.1125
369 C A 0.0000
370 P A -1.0461
371 P A -1.1870
372 E A -1.9519
373 M A -0.6202
374 F A -0.5456
375 D A -0.7206
376 V A -0.1205
377 I A 0.1338
378 L A 0.0000
379 D A -2.1774
380 E A -2.5588
381 N A -2.7252
382 Q A -2.6734
383 L A -1.4679
384 E A -3.2239
385 D A -3.7713
386 A A -2.5741
387 C A 0.0000
388 E A -3.5742
389 H A -2.8363
390 L A 0.0000
391 G A 0.0000
392 E A -2.4472
393 Y A -1.2528
394 L A 0.0000
395 E A -1.0464
396 A A -1.4497
397 Y A 0.0000
398 W A -1.3514
399 R A -2.4490
400 A A 0.0000
401 T A 0.0000
402 H A -1.3891
403 T A -1.7414
404 S A -1.2133
405 S A -0.8483
406 S A -0.5681
407 T A -0.1212
408 P A 0.0743
409 M A 0.9571
410 T A 0.8898
411 P A 0.9653
412 L A 1.9452
413 L A 1.3653
414 G A -0.3298
415 R A -1.6935
416 N A -1.3737
417 V A 0.3716
418 G A -0.2412
419 S A -0.0304
420 T A 0.0884
421 A A 0.6049
422 L A 1.3780
423 S A 0.6833
424 P A 0.5522
425 Y A 0.9902
426 P A 0.4097
427 T A 0.5776
428 A A 0.9075
429 I A 1.7908
430 S A 0.9541
431 G A 0.4160
432 L A 0.6040
433 Q A -0.8625
434 S A -1.4664
435 Q A -2.2452
436 R A -2.2659
437 M A -1.2896
438 R A -2.2531
439 H A -2.0829
440 S A -1.9558
441 N A -2.1168
442 H A -1.7673
443 S A -1.4650
444 T A -1.6305
445 E A -2.5584
446 N A -2.3304
447 S A -1.0104
448 P A -0.0133
449 I A 0.6062
450 E A -2.1678
451 R A -3.3194
452 R A -2.8976
453 S A -0.6893
454 L A 1.6386
455 M A 1.8141
456 T A 0.2751
457 S A -1.0829
458 D A -3.0612
459 E A -3.2099
460 N A -2.0532
461 Y A -0.4715
462 H A -1.8622
463 N A -2.9273
464 E A -3.6166
465 R A -3.3477
466 A A -2.6606
467 R A -3.1790
468 K A -3.1694
469 S A -2.8397
470 R A -3.3193
471 N A -2.9709
472 R A -2.3319
473 L A 0.0253
474 S A 0.0310
475 S A -0.1339
476 S A -0.7114
477 S A -1.1908
478 Q A -1.8584
479 H A -2.1230
480 S A -2.3521
481 R A -3.2409
482 D A -2.9851
483 H A -1.8001
484 Y A 0.6545
485 P A 1.3116
486 L A 1.9128
487 V A 0.9860
488 E A -1.8297
489 E A -2.6785
490 D A -2.6206
491 Y A -0.8712
492 P A -1.0563
493 D A -1.6993
494 S A -0.8385
495 Y A -0.3073
496 Q A -1.6568
497 D A -2.0200
498 T A -0.9405
499 Y A -0.3615
500 K A -1.9863
501 P A -1.8673
502 H A -2.8646
503 R A -3.7881
504 N A -3.4969
505 R A -3.3678
506 G A -2.1658
507 S A -1.3041
508 P A -1.0097
509 G A -0.7749
510 G A -0.4551
511 C A -0.0759
512 S A -0.8372
513 H A -1.9997
514 D A -2.7907
515 S A -2.3942
516 R A -3.1943
517 H A -2.5819
518 R A -2.0295
519 L A 0.3994
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -1.2383 5.1117 View CSV PDB
4.5 -1.3219 5.1117 View CSV PDB
5.0 -1.4236 5.1117 View CSV PDB
5.5 -1.5233 5.1117 View CSV PDB
6.0 -1.6005 5.1117 View CSV PDB
6.5 -1.6433 5.1117 View CSV PDB
7.0 -1.6548 5.1117 View CSV PDB
7.5 -1.6476 5.1117 View CSV PDB
8.0 -1.6308 5.1117 View CSV PDB
8.5 -1.6058 5.1117 View CSV PDB
9.0 -1.5699 5.1117 View CSV PDB