Project name: a83560a4e639b9

Status: done

Started: 2026-10-21 12:35:16
Settings
Chain sequence(s) MTLHSNSTTSPLFPNISSSWVHSPSEAGLPLGTVTQLGSYNISQETGNFSSNDTSSDPLGGHTIWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKRTKELAGLQASGTEAEAENFVHPTGSSRSCSSYELQQQGVKRSSRRKYGRCHFWFTTKSWKPSAEQMDQDHSSSDSWNNNDAAASLENSASSDEEDIGSETRAIYSIVLKLPGHSSILNSTKLPSSDNLQVSNEDLGTVDVERNAHKLQAQKSMGDGDNCQKDFTKLPIQLESAVDTGKTSDTNSSADKTTATLPLSFKEATLAKRFALKTRSQITKRKRMSLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLLLCQCDKRKRRKQQYQQRQSVIFHKRVPEQAL input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:06)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:06)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:18:53)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/a83560a4e639b9/tmp/folded.pdb                 (00:18:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:29:38)
Show buried residues

Minimal score value
-6.0315
Maximal score value
3.8093
Average score
-0.387
Total score value
-227.9324

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3627
2 T A 0.9642
3 L A 1.2279
4 H A -0.6553
5 S A -1.1033
6 N A -1.7377
7 S A -0.9760
8 T A -0.5240
9 T A -0.3012
10 S A -0.0802
11 P A 0.7468
12 L A 2.2465
13 F A 2.2208
14 P A 0.9181
15 N A -0.0536
16 I A 1.1910
17 S A 0.2830
18 S A 0.4076
19 S A 0.6037
20 W A 1.6693
21 V A 1.7486
22 H A -0.0396
23 S A -0.5429
24 P A -1.0761
25 S A -1.2956
26 E A -2.0473
27 A A -0.7682
28 G A -0.1069
29 L A 1.5057
30 P A 1.0381
31 L A 1.4802
32 G A 0.5972
33 T A 0.8791
34 V A 1.3210
35 T A 0.4911
36 Q A -0.2080
37 L A 0.8136
38 G A 0.0604
39 S A 0.3635
40 Y A 1.1000
41 N A 0.0666
42 I A 1.0695
43 S A -0.4172
44 Q A -1.9234
45 E A -2.5600
46 T A -1.5742
47 G A -1.2996
48 N A -0.8919
49 F A 0.8246
50 S A -0.4445
51 S A -1.1296
52 N A -2.0983
53 D A -2.6482
54 T A -1.8618
55 S A -1.5934
56 S A -1.4731
57 D A -2.0425
58 P A -1.3041
59 L A -0.4658
60 G A -1.2690
61 G A -0.8016
62 H A 0.0425
63 T A 1.1327
64 I A 2.9736
65 W A 2.7794
66 Q A 1.7259
67 V A 0.0000
68 V A 3.8093
69 F A 3.4172
70 I A 2.6481
71 A A 2.5016
72 F A 3.6848
73 L A 3.0565
74 T A 0.0000
75 G A 2.1841
76 F A 3.4118
77 L A 2.4868
78 A A 0.0000
79 L A 3.1081
80 V A 2.6589
81 T A 0.0000
82 I A 2.5760
83 I A 2.4877
84 G A 1.7418
85 N A 0.0000
86 I A 1.8978
87 L A 1.3858
88 V A 0.0000
89 I A 0.8501
90 V A 0.8112
91 A A 0.0000
92 F A -0.6811
93 K A -1.4236
94 V A -0.4033
95 N A -1.5132
96 K A -2.8365
97 Q A -2.3570
98 L A 0.0000
99 K A -2.2715
100 T A -1.0198
101 V A -0.8040
102 N A -0.2646
103 N A 0.0000
104 Y A 0.3054
105 F A 0.0000
106 L A 0.4535
107 L A 0.4286
108 S A 0.0000
109 L A 0.0000
110 A A 0.0000
111 C A 0.7623
112 A A 0.0000
113 D A 0.0000
114 L A 1.3845
115 I A 1.3516
116 I A 0.0000
117 G A 0.0000
118 V A 1.5491
119 I A 1.2359
120 S A 0.0000
121 M A 0.0000
122 N A -0.0179
123 L A 0.4530
124 F A 0.0000
125 T A 0.0354
126 T A -0.1633
127 Y A -0.3790
128 I A -0.3097
129 I A 0.0000
130 M A -0.7239
131 N A -1.6186
132 R A -2.1660
133 W A 0.0000
134 A A -0.3455
135 L A 0.8485
136 G A -0.1026
137 N A -0.6118
138 L A 1.2707
139 A A 0.8525
140 C A 0.0000
141 D A 0.0000
142 L A 1.1931
143 W A 0.0000
144 L A 0.0000
145 S A 0.0000
146 I A 1.3325
147 D A 0.0000
148 Y A 0.0000
149 V A 0.0000
150 A A 0.0000
151 S A 0.1678
152 N A 0.0000
153 A A 0.0000
154 S A 0.0000
155 V A 0.0000
156 M A 0.0000
157 N A 0.0000
158 L A 0.0000
159 L A 0.0000
160 V A 0.8276
161 I A 0.0000
162 S A 0.0000
163 F A 1.7986
164 D A 0.0000
165 R A 0.5546
166 Y A 1.0381
167 F A 1.2892
168 S A 0.0540
169 I A 0.0000
170 T A -0.2714
171 R A -1.0436
172 P A -0.3143
173 L A 0.4073
174 T A -0.5264
175 Y A -1.0864
176 R A -1.9372
177 A A -1.4522
178 K A -2.3427
179 R A -2.1600
180 T A -2.0148
181 T A -1.4115
182 K A -2.3268
183 R A -2.4834
184 A A 0.0000
185 G A -0.4383
186 V A 0.5047
187 M A 0.7355
188 I A 0.0000
189 G A 1.2097
190 L A 2.5487
191 A A 0.0000
192 W A 2.4032
193 V A 3.5863
194 I A 3.2627
195 S A 0.0000
196 F A 3.7384
197 V A 3.4678
198 L A 2.1637
199 W A 0.0000
200 A A 1.6842
201 P A 1.4280
202 A A 1.4444
203 I A 0.0000
204 L A 1.9673
205 F A 3.0290
206 W A 1.9243
207 Q A 1.0568
208 Y A 2.4111
209 F A 2.8658
210 V A 1.2241
211 G A 0.1303
212 K A -1.4774
213 R A -1.2674
214 T A -0.8954
215 V A 0.0000
216 P A -0.8002
217 P A -1.2956
218 G A -1.6116
219 E A -2.0002
220 C A 0.0000
221 F A 0.5806
222 I A 0.0000
223 Q A 0.0000
224 F A 0.0000
225 L A 0.0000
226 S A -0.5773
227 E A -0.4318
228 P A 0.1899
229 T A -0.0325
230 I A 0.3649
231 T A 0.0000
232 F A 0.8597
233 G A 0.4366
234 T A 0.5973
235 A A 0.0000
236 I A 1.6769
237 A A 0.9119
238 A A 0.0000
239 F A 0.0000
240 Y A 1.2602
241 M A 1.2450
242 P A 0.0000
243 V A 1.0640
244 T A 1.0651
245 I A 1.5404
246 M A 0.0000
247 T A 1.2683
248 I A 1.7909
249 L A 0.0000
250 Y A 0.0000
251 W A 0.9709
252 R A -0.8963
253 I A 0.0000
254 Y A -0.7602
255 K A -2.5155
256 E A -2.1973
257 T A 0.0000
258 E A -3.8805
259 K A -3.7646
260 R A -3.1182
261 T A -2.9457
262 K A -3.5792
263 E A -3.2306
264 L A 0.0000
265 A A -1.4982
266 G A -1.1594
267 L A -0.1672
268 Q A -1.2206
269 A A -0.9471
270 S A -0.9460
271 G A -1.1382
272 T A -1.7809
273 E A -2.7546
274 A A -2.0164
275 E A -1.6958
276 A A -1.2767
277 E A -2.0491
278 N A -1.3392
279 F A 0.9609
280 V A 1.0954
281 H A -0.4185
282 P A -0.2200
283 T A -0.5438
284 G A -1.0572
285 S A -1.0022
286 S A -1.3931
287 R A -2.0050
288 S A -0.9252
289 C A 0.1772
290 S A -0.1321
291 S A 0.1660
292 Y A 0.6512
293 E A -0.9220
294 L A 0.0288
295 Q A -1.7257
296 Q A -2.1721
297 Q A -1.9629
298 G A -1.1059
299 V A -0.2435
300 K A -2.0486
301 R A -2.4158
302 S A -1.8535
303 S A -2.0248
304 R A -3.2413
305 R A -3.5006
306 K A -2.6430
307 Y A -0.5345
308 G A -1.1942
309 R A -1.6555
310 C A -0.3103
311 H A 0.2360
312 F A 2.6104
313 W A 2.8457
314 F A 2.6914
315 T A 0.8015
316 T A -0.3615
317 K A -1.3958
318 S A -0.9760
319 W A -0.2302
320 K A -1.2745
321 P A -0.8972
322 S A -1.0126
323 A A -1.2419
324 E A -2.2872
325 Q A -2.0891
326 M A -1.0915
327 D A -2.4499
328 Q A -2.9378
329 D A -3.2744
330 H A -2.2779
331 S A -1.2213
332 S A -1.0178
333 S A -1.2226
334 D A -1.9233
335 S A -1.0937
336 W A -0.4188
337 N A -2.1136
338 N A -2.6607
339 N A -2.8258
340 D A -2.8648
341 A A -1.1070
342 A A -0.6975
343 A A -0.7612
344 S A -0.5156
345 L A 0.1833
346 E A -1.8045
347 N A -1.8622
348 S A -1.3509
349 A A -1.6382
350 S A -2.2263
351 S A -2.5387
352 D A -3.8375
353 E A -4.0473
354 E A -4.2840
355 D A -4.0835
356 I A -2.9485
357 G A -2.7796
358 S A -2.4675
359 E A -2.2809
360 T A -1.0053
361 R A -0.9644
362 A A 0.6524
363 I A 2.7860
364 Y A 2.6162
365 S A 2.1753
366 I A 3.7354
367 V A 3.6306
368 L A 2.8547
369 K A 0.8102
370 L A 1.4590
371 P A -0.0420
372 G A -0.5288
373 H A 0.0227
374 S A 0.1441
375 S A 0.1633
376 I A 1.5460
377 L A 0.6557
378 N A -0.8575
379 S A -0.3225
380 T A -0.3976
381 K A -1.3141
382 L A 0.4614
383 P A -0.4069
384 S A -0.8960
385 S A -1.1354
386 D A -2.3987
387 N A -1.5878
388 L A 0.3172
389 Q A -0.3925
390 V A 1.0393
391 S A -0.4736
392 N A -2.4215
393 E A -3.0573
394 D A -2.2111
395 L A -0.0121
396 G A 0.2354
397 T A 0.5444
398 V A 1.1452
399 D A -0.4584
400 V A -0.0241
401 E A -2.5406
402 R A -3.0573
403 N A -2.8131
404 A A -1.7989
405 H A -1.7609
406 K A -1.7065
407 L A -0.0701
408 Q A -1.0182
409 A A -1.2540
410 Q A -2.2743
411 K A -2.1465
412 S A -0.8623
413 M A -0.0219
414 G A -0.9576
415 D A -2.3882
416 G A -2.5480
417 D A -3.0373
418 N A -2.4230
419 C A -1.2358
420 Q A -2.4281
421 K A -2.7085
422 D A -2.1557
423 F A 0.1629
424 T A -0.2917
425 K A -0.6065
426 L A 0.8851
427 P A 0.8686
428 I A 1.6565
429 Q A 0.1389
430 L A 0.4744
431 E A -1.0448
432 S A -0.6046
433 A A 0.0508
434 V A 0.6140
435 D A -1.0473
436 T A -1.1785
437 G A -1.7795
438 K A -2.2231
439 T A -1.6318
440 S A -1.6168
441 D A -2.3771
442 T A -1.6704
443 N A -1.8270
444 S A -1.0044
445 S A -0.9498
446 A A -1.3271
447 D A -2.6521
448 K A -2.5954
449 T A -1.3793
450 T A -0.5875
451 A A 0.1071
452 T A 0.7121
453 L A 1.7562
454 P A 1.4794
455 L A 1.6064
456 S A 0.8187
457 F A 1.1826
458 K A -0.8906
459 E A -1.1945
460 A A -0.1442
461 T A -0.4755
462 L A 0.2514
463 A A -0.2645
464 K A -1.2529
465 R A -1.4795
466 F A 0.4713
467 A A -0.5188
468 L A -1.1097
469 K A -1.8237
470 T A -1.1134
471 R A -1.5585
472 S A -1.6775
473 Q A -2.0467
474 I A -0.5609
475 T A -1.6936
476 K A -2.8351
477 R A -2.6605
478 K A -2.4577
479 R A -2.3662
480 M A -1.4635
481 S A -1.8683
482 L A 0.0000
483 I A -0.9526
484 K A -2.4265
485 E A -2.0845
486 K A -2.3143
487 K A -2.7314
488 A A -1.8399
489 A A 0.0000
490 Q A -1.9407
491 T A -0.7090
492 L A -0.2893
493 S A 0.1431
494 A A 0.4038
495 I A 0.0000
496 L A 0.0000
497 L A 2.2637
498 A A 1.7650
499 F A 0.0000
500 I A 2.0443
501 I A 2.7200
502 T A 0.0000
503 W A 0.0000
504 T A 1.3255
505 P A 1.3735
506 Y A 0.0000
507 N A 0.0000
508 I A 2.0654
509 M A 0.0000
510 V A 0.0000
511 L A 1.6910
512 V A 1.8496
513 N A 0.6811
514 T A 0.6206
515 F A 1.7897
516 C A 0.5884
517 D A -1.1270
518 S A -0.5611
519 C A 0.4405
520 I A 0.0361
521 P A -0.7417
522 K A -1.2787
523 T A -0.2207
524 Y A 0.6850
525 W A 0.2438
526 N A 0.2217
527 L A 1.2170
528 G A 0.0000
529 Y A 0.0000
530 W A 0.0000
531 L A 1.1826
532 C A 0.8832
533 Y A 0.0000
534 I A 0.8419
535 N A 0.0000
536 S A 0.0000
537 T A 1.2059
538 V A 0.9511
539 N A 0.0000
540 P A 0.0000
541 V A 1.4909
542 C A 1.0165
543 Y A 0.0000
544 A A -0.1193
545 L A 1.0851
546 C A -0.2247
547 N A -1.4585
548 K A -2.1944
549 T A -1.8556
550 F A 0.0000
551 R A -2.1633
552 T A -1.8531
553 T A 0.0000
554 F A 0.0000
555 K A -1.1187
556 T A -0.5103
557 L A 1.0156
558 L A 1.8515
559 L A 1.7232
560 C A 0.8891
561 Q A -1.1558
562 C A -1.6888
563 D A -3.4694
564 K A -4.6701
565 R A -5.4572
566 K A -5.6661
567 R A -6.0315
568 R A -5.9062
569 K A -5.5829
570 Q A -4.9805
571 Q A -4.4799
572 Y A -2.6922
573 Q A -3.0483
574 Q A -2.7872
575 R A -2.4493
576 Q A -1.3939
577 S A -0.6613
578 V A -0.2224
579 I A -0.0414
580 F A 0.4414
581 H A -0.8240
582 K A -1.8513
583 R A -1.7841
584 V A -0.1882
585 P A -1.2060
586 E A -2.3000
587 Q A -1.5639
588 A A -0.1196
589 L A 0.8139
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.2336 7.2675 View CSV PDB
4.5 -0.2851 7.2675 View CSV PDB
5.0 -0.3475 7.2675 View CSV PDB
5.5 -0.4041 7.2675 View CSV PDB
6.0 -0.4365 7.2675 View CSV PDB
6.5 -0.4353 7.2675 View CSV PDB
7.0 -0.4048 7.2675 View CSV PDB
7.5 -0.3559 7.2675 View CSV PDB
8.0 -0.2974 7.2675 View CSV PDB
8.5 -0.2323 7.2675 View CSV PDB
9.0 -0.1604 7.2675 View CSV PDB