Project name: b3020179d8de9c

Status: done

Started: 2026-11-12 09:49:48
Settings
Chain sequence(s) MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPSLHGIPIADNNPFNLLRIPGSVSREASGLAEGRFPPTPPLFSPPPRHHLDPHRIERLGAEEMALATHHPSAFDRVLRLNPMAMEPPAMDFSRRLRELAGNTSSPPLSPGRPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGKTFKFQSNLVVHRRSHTGEKPYKCNLCDHACTQASKLKRHMKTHMHKSSPMTVKSDDGLSTASSPEPGTSDLVGSASSALKSVVAKFKSENDPNLIPENGDEEEEEDDEEEEEEEEEEEEELTESERVDYGFGLSLEAARHHENSSRGAVVGVGDEGRALPDVMQGMVLSSMQHFSEAFHQVLGEKHKRSHLAEAEGHRDTCDEDSVAGESDRIDDGTVNGRGCSPGESASGGLSKKLLLGSPSSLSPFSKRIKLEKEFDLPPAAMPNTENVYSQWLAGYAASRQLKDPFLTFGDSRQSPFASSSEHSSENGSLRFSTPPGELDGGISGRSGTGSGGSTPHISGPGPGRPSSKEGRRSDTCPSHTPVRRSTPRAQDVWQFSDGSSRALKF input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:12)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:12)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:23:42)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/b3020179d8de9c/tmp/folded.pdb                 (00:23:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:39:20)
Show buried residues

Minimal score value
-6.5946
Maximal score value
3.0605
Average score
-0.834
Total score value
-644.678

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.5192
2 S A -0.8729
3 R A -3.1453
4 R A -3.9546
5 K A -3.9525
6 Q A -3.3949
7 G A -2.5037
8 K A -2.7587
9 P A -1.9787
10 Q A -1.9187
11 H A -1.0358
12 L A 0.3590
13 S A -0.7713
14 K A -2.7880
15 R A -3.2420
16 E A -2.2339
17 F A 0.4891
18 S A -0.1990
19 P A -0.8970
20 E A -1.8051
21 P A -0.9956
22 L A 0.0519
23 E A -0.5810
24 A A 0.9706
25 I A 2.3897
26 L A 2.0300
27 T A -0.1612
28 D A -2.6418
29 D A -3.5737
30 E A -3.5878
31 P A -2.6723
32 D A -2.9892
33 H A -2.2407
34 G A -1.1939
35 P A -0.2865
36 L A 1.0774
37 G A -0.0551
38 A A -0.4127
39 P A -1.4364
40 E A -2.7516
41 G A -2.8732
42 D A -3.3473
43 H A -2.8056
44 D A -2.5029
45 L A -0.9784
46 L A -0.2289
47 T A -0.7383
48 C A 0.0000
49 G A -1.3754
50 Q A -1.8181
51 C A -0.9318
52 Q A -1.3324
53 M A -0.3675
54 N A -1.0664
55 F A 0.0000
56 P A -0.8264
57 L A 0.0761
58 G A -0.1933
59 D A 0.4404
60 I A 1.8616
61 L A 2.4987
62 I A 2.1420
63 F A 0.0000
64 I A 0.8148
65 E A -1.1792
66 H A 0.0000
67 K A -2.5992
68 R A -3.6911
69 K A -3.9801
70 Q A -3.3590
71 C A -2.6584
72 N A -3.2619
73 G A -1.7627
74 S A 0.2490
75 L A 1.7853
76 C A 1.7036
77 L A 0.9839
78 E A -1.4673
79 K A -2.2137
80 G A -1.0367
81 V A -0.3136
82 D A -2.2180
83 K A -2.4883
84 P A -1.6447
85 P A -0.9008
86 S A -0.5934
87 P A -0.6130
88 S A -0.2425
89 P A 0.1326
90 I A 1.0195
91 E A -1.0908
92 M A -0.5914
93 K A -2.2785
94 K A -2.6492
95 A A -1.6145
96 S A -1.2793
97 N A -1.4485
98 P A -0.3185
99 V A 0.8630
100 E A -0.2162
101 V A 1.5177
102 G A 1.0686
103 I A 1.9355
104 Q A 0.7157
105 V A 1.3263
106 T A -0.1464
107 P A -1.5729
108 E A -3.3664
109 D A -3.9909
110 D A -3.7778
111 D A -2.6734
112 C A -0.0916
113 L A 1.1596
114 S A 0.4054
115 T A 0.1219
116 S A -0.7804
117 S A -1.3552
118 R A -1.7534
119 G A -0.2757
120 I A 1.6612
121 C A 0.9498
122 P A -0.6627
123 K A -2.7845
124 Q A -3.0830
125 E A -2.9217
126 H A -1.5450
127 I A 0.5839
128 A A -0.7088
129 D A -1.9131
130 K A -1.4358
131 L A 0.9927
132 L A 1.8029
133 H A 0.2994
134 W A -0.0059
135 R A -1.3997
136 G A -0.2818
137 L A 0.7290
138 S A 0.2606
139 S A -0.5464
140 P A -1.3378
141 R A -2.1116
142 S A -1.4344
143 A A -1.0646
144 H A -1.2153
145 G A -0.5519
146 A A 0.7775
147 L A 2.3845
148 I A 2.6000
149 P A 0.9969
150 T A 0.0545
151 P A -0.1505
152 G A -0.1438
153 M A 0.6717
154 S A -0.0837
155 A A -0.3998
156 E A -1.1855
157 Y A 0.2868
158 A A -0.1552
159 P A -0.3814
160 Q A -0.7526
161 G A -0.1574
162 I A 1.0305
163 C A -0.2032
164 K A -2.2216
165 D A -3.0289
166 E A -3.1813
167 P A -1.5293
168 S A -1.1175
169 S A -0.3952
170 Y A 0.4115
171 T A -0.3765
172 C A 0.0000
173 T A -0.2143
174 T A -0.3391
175 C A -0.8638
176 K A -1.9974
177 Q A -1.6534
178 P A -0.7242
179 F A 0.4373
180 T A 0.4028
181 S A 0.8223
182 A A 1.1771
183 W A 2.3650
184 F A 2.6286
185 L A 1.3731
186 L A 1.4930
187 Q A 0.3482
188 H A -0.0684
189 A A 0.0000
190 Q A -1.1791
191 N A -1.9053
192 T A -1.0597
193 H A -1.0878
194 G A -1.1823
195 L A -0.3883
196 R A -0.9240
197 I A 0.8881
198 Y A 1.5247
199 L A 1.0549
200 E A -1.2661
201 S A -1.7533
202 E A -2.8186
203 H A -2.3766
204 G A -1.3727
205 S A -0.5878
206 P A 0.2390
207 L A 0.9463
208 T A 0.1621
209 P A -0.3780
210 R A -0.8186
211 V A 1.0442
212 G A 0.7468
213 I A 1.8074
214 P A 0.5829
215 S A 0.1579
216 G A 0.2332
217 L A 1.0563
218 G A -0.1984
219 A A -0.5178
220 E A -1.5959
221 C A -0.3192
222 P A -0.5782
223 S A -0.8027
224 Q A -1.5440
225 P A -0.7698
226 S A -0.0484
227 L A 0.8257
228 H A -0.1181
229 G A 0.2601
230 I A 1.8652
231 P A 1.7159
232 I A 1.9651
233 A A -0.1666
234 D A -2.2228
235 N A -2.6222
236 N A -2.0238
237 P A -0.5006
238 F A 1.0469
239 N A 0.4888
240 L A 1.5948
241 L A 1.5162
242 R A 0.0166
243 I A 1.1989
244 P A 0.0914
245 G A -0.0449
246 S A 0.3034
247 V A 1.0411
248 S A -0.6588
249 R A -2.4123
250 E A -2.7769
251 A A -1.2610
252 S A -0.4786
253 G A 0.0242
254 L A 0.9235
255 A A -0.2467
256 E A -2.0948
257 G A -1.8832
258 R A -1.5239
259 F A 0.7586
260 P A 0.1418
261 P A -0.0701
262 T A -0.0601
263 P A 0.0660
264 P A 0.7619
265 L A 2.2208
266 F A 2.4048
267 S A 0.8588
268 P A -0.1314
269 P A -0.8872
270 P A -1.7425
271 R A -2.6102
272 H A -2.2759
273 H A -1.6810
274 L A -0.6422
275 D A -2.1693
276 P A -1.4277
277 H A -2.1214
278 R A -2.4081
279 I A -0.2440
280 E A -2.1454
281 R A -1.8696
282 L A 0.0964
283 G A -1.1521
284 A A -1.2087
285 E A -2.3172
286 E A -2.0321
287 M A 0.1114
288 A A 0.6472
289 L A 1.5986
290 A A 0.5182
291 T A -0.5321
292 H A -1.6102
293 H A -1.7064
294 P A -1.0099
295 S A -0.5155
296 A A 0.1960
297 F A 1.1014
298 D A -1.0823
299 R A -1.0047
300 V A 1.3254
301 L A 1.0798
302 R A -0.8384
303 L A 0.5877
304 N A -0.6180
305 P A -0.0604
306 M A 0.8919
307 A A 0.4500
308 M A 0.3453
309 E A -1.3689
310 P A -0.8865
311 P A -0.5289
312 A A 0.2351
313 M A 0.7987
314 D A -0.0800
315 F A 0.6318
316 S A -0.9571
317 R A -2.6182
318 R A -1.8900
319 L A -0.8061
320 R A -2.6594
321 E A -2.6778
322 L A -0.4192
323 A A -0.7938
324 G A -1.4878
325 N A -1.6133
326 T A -1.0390
327 S A -0.8095
328 S A -0.4879
329 P A -0.1921
330 P A 0.2470
331 L A 1.1791
332 S A 0.2306
333 P A -0.6038
334 G A -1.5745
335 R A -2.3427
336 P A -1.8269
337 S A -0.9983
338 P A -0.7572
339 M A 0.0494
340 Q A -1.0628
341 R A -1.3193
342 L A 0.9383
343 L A 1.1465
344 Q A -0.1924
345 P A 0.4011
346 F A 0.9650
347 Q A -0.5689
348 P A -0.8956
349 G A -1.1195
350 S A -1.3610
351 K A -2.1316
352 P A -0.9825
353 P A 0.4573
354 F A 2.6616
355 L A 2.6103
356 A A 1.1605
357 T A 0.2780
358 P A -0.0696
359 P A 0.2653
360 L A 1.3791
361 P A 0.5045
362 P A 0.3661
363 L A 0.9330
364 Q A -0.6600
365 S A -0.4946
366 A A -0.3748
367 P A -0.6479
368 P A -0.7379
369 P A -0.8937
370 S A -1.1289
371 Q A -1.2916
372 P A -0.7789
373 P A -0.4008
374 V A 0.2569
375 K A -1.4878
376 S A -1.5032
377 K A -1.9150
378 S A -1.8119
379 C A 0.0000
380 E A -1.5987
381 F A 0.3453
382 C A -0.1442
383 G A -1.0682
384 K A -1.5933
385 T A -1.7102
386 F A -1.2502
387 K A -1.4369
388 F A 0.1405
389 Q A -0.8273
390 S A -0.1178
391 N A -0.2957
392 L A -0.4692
393 V A 1.1210
394 V A 0.0471
395 H A -0.6968
396 R A -1.3000
397 R A -1.6416
398 S A -1.4288
399 H A -1.2444
400 T A -1.4790
401 G A -2.0407
402 E A -2.7150
403 K A -2.5839
404 P A -1.5356
405 Y A -1.5035
406 K A -2.4885
407 C A 0.0000
408 N A -1.4305
409 L A -0.0035
410 C A -0.9002
411 D A -2.4494
412 H A -2.2062
413 A A -2.2335
414 C A 0.0000
415 T A 0.0000
416 Q A -1.0790
417 A A -1.1815
418 S A -1.3167
419 K A -1.5176
420 L A -2.0546
421 K A -2.9792
422 R A -3.2803
423 H A -2.1361
424 M A -1.7383
425 K A -2.7556
426 T A -1.8942
427 H A -1.0997
428 M A -0.6741
429 H A -1.8236
430 K A -2.3243
431 S A -1.0352
432 S A -0.7004
433 P A 0.0799
434 M A 1.0712
435 T A 0.7485
436 V A 0.9114
437 K A -1.4342
438 S A -1.9209
439 D A -2.8963
440 D A -2.8381
441 G A -1.2740
442 L A 0.6246
443 S A 0.4110
444 T A 0.1459
445 A A -0.1729
446 S A -0.3625
447 S A -0.9042
448 P A -1.3969
449 E A -2.2205
450 P A -1.4378
451 G A -1.1077
452 T A -0.8174
453 S A -0.9517
454 D A -0.7879
455 L A 1.4507
456 V A 1.9436
457 G A 0.6328
458 S A -0.1119
459 A A -0.3131
460 S A -0.3214
461 S A 0.0928
462 A A 0.3529
463 L A 0.6678
464 K A -0.4762
465 S A 0.4664
466 V A 2.1096
467 V A 2.1914
468 A A 0.6652
469 K A -0.4726
470 F A -0.0872
471 K A -1.6692
472 S A -1.8636
473 E A -3.1382
474 N A -3.3044
475 D A -3.1796
476 P A -1.6620
477 N A -0.4647
478 L A 1.8778
479 I A 2.0881
480 P A -0.2667
481 E A -2.3355
482 N A -3.2026
483 G A -3.3075
484 D A -3.9755
485 E A -5.0394
486 E A -5.7278
487 E A -5.9189
488 E A -6.1513
489 E A -6.5924
490 D A -6.4932
491 D A -6.5261
492 E A -6.5946
493 E A -6.4718
494 E A -5.6628
495 E A -6.1231
496 E A -6.3731
497 E A -6.1121
498 E A -5.6350
499 E A -6.1696
500 E A -6.1783
501 E A -5.3279
502 E A -4.4497
503 E A -5.0751
504 E A -4.5840
505 L A -2.6143
506 T A -2.8709
507 E A -3.7725
508 S A -2.6826
509 E A -3.1363
510 R A -2.6435
511 V A -0.6453
512 D A -1.2892
513 Y A 0.5097
514 G A 0.6648
515 F A 1.9014
516 G A 1.2476
517 L A 1.8074
518 S A 0.7693
519 L A 0.7508
520 E A -0.7623
521 A A -0.8427
522 A A -1.4137
523 R A -2.7218
524 H A -2.8742
525 H A -3.0764
526 E A -3.4901
527 N A -2.7795
528 S A -1.7125
529 S A -1.7602
530 R A -2.1977
531 G A -0.9127
532 A A 0.7422
533 V A 2.4198
534 V A 2.7305
535 G A 1.6685
536 V A 1.2554
537 G A -0.9711
538 D A -2.5742
539 E A -3.3637
540 G A -2.5558
541 R A -2.1301
542 A A -0.2401
543 L A 0.6726
544 P A 0.1067
545 D A -0.4751
546 V A 1.1052
547 M A 0.7898
548 Q A -0.2564
549 G A 0.2653
550 M A 1.8230
551 V A 3.0605
552 L A 2.7681
553 S A 1.2185
554 S A 0.5866
555 M A 0.7065
556 Q A -0.9556
557 H A -0.7514
558 F A 0.8084
559 S A -0.3650
560 E A -1.2093
561 A A -0.0823
562 F A 0.7817
563 H A -0.4829
564 Q A -0.1742
565 V A 1.6217
566 L A 1.4841
567 G A -0.3695
568 E A -2.7175
569 K A -3.5416
570 H A -3.5112
571 K A -3.5716
572 R A -3.1960
573 S A -1.6054
574 H A -0.6392
575 L A 0.5957
576 A A -0.4090
577 E A -1.7723
578 A A -1.7878
579 E A -2.6418
580 G A -2.3534
581 H A -2.8919
582 R A -3.3494
583 D A -2.8273
584 T A -1.3116
585 C A -0.9319
586 D A -2.8286
587 E A -3.6040
588 D A -2.8722
589 S A -0.3825
590 V A 1.1995
591 A A 0.1477
592 G A -1.0860
593 E A -2.5440
594 S A -2.6149
595 D A -2.8879
596 R A -2.2383
597 I A -0.4134
598 D A -2.1348
599 D A -2.5411
600 G A -1.3266
601 T A -0.0734
602 V A 0.9156
603 N A -1.0230
604 G A -1.7484
605 R A -2.4088
606 G A -1.3145
607 C A -0.0822
608 S A -0.3839
609 P A -0.8480
610 G A -1.7474
611 E A -2.2629
612 S A -1.2635
613 A A -0.8088
614 S A -0.4685
615 G A -0.5456
616 G A -0.0943
617 L A 0.6975
618 S A -0.6324
619 K A -2.0102
620 K A -1.5038
621 L A 1.2996
622 L A 2.6150
623 L A 2.3291
624 G A 0.4226
625 S A -0.2917
626 P A -0.6291
627 S A -0.1936
628 S A 0.3261
629 L A 1.2476
630 S A 0.7442
631 P A 0.8268
632 F A 1.2946
633 S A -0.5043
634 K A -1.8964
635 R A -2.1619
636 I A -0.0133
637 K A -0.8818
638 L A -0.3120
639 E A -2.6009
640 K A -2.9848
641 E A -2.3202
642 F A 0.1484
643 D A -0.6061
644 L A 0.8739
645 P A 0.0912
646 P A 0.0196
647 A A 0.2887
648 A A 0.3423
649 M A 0.6186
650 P A -0.5759
651 N A -1.8943
652 T A -1.4734
653 E A -2.2644
654 N A -1.3466
655 V A 1.2268
656 Y A 1.5711
657 S A 0.5056
658 Q A 0.2420
659 W A 1.6478
660 L A 1.8979
661 A A 0.7890
662 G A 0.4450
663 Y A 1.2327
664 A A 0.3270
665 A A -0.2362
666 S A -0.8134
667 R A -2.1871
668 Q A -1.7845
669 L A -0.8180
670 K A -2.2414
671 D A -1.9978
672 P A 0.0103
673 F A 2.3852
674 L A 2.9825
675 T A 1.9628
676 F A 1.5386
677 G A -0.2387
678 D A -2.0675
679 S A -2.3430
680 R A -2.9759
681 Q A -2.0846
682 S A -0.8802
683 P A 0.0744
684 F A 1.5910
685 A A 0.7803
686 S A -0.1074
687 S A -0.7772
688 S A -1.6600
689 E A -2.5878
690 H A -2.3290
691 S A -1.9527
692 S A -2.1276
693 E A -2.8989
694 N A -2.3679
695 G A -1.3367
696 S A -0.4083
697 L A 0.6857
698 R A -0.3303
699 F A 1.2482
700 S A 0.2414
701 T A -0.1297
702 P A -0.5143
703 P A -0.8956
704 G A -1.2384
705 E A -1.7839
706 L A -0.4866
707 D A -1.7561
708 G A -0.8311
709 G A -0.0683
710 I A 1.4843
711 S A 0.0780
712 G A -1.1617
713 R A -2.3213
714 S A -1.4571
715 G A -1.1555
716 T A -0.6323
717 G A -0.8776
718 S A -0.8058
719 G A -0.9898
720 G A -0.9589
721 S A -0.6809
722 T A -0.6568
723 P A -0.4236
724 H A -0.2102
725 I A 1.2589
726 S A 0.1301
727 G A -0.5554
728 P A -0.8914
729 G A -1.1925
730 P A -1.2521
731 G A -1.6734
732 R A -2.3599
733 P A -1.5250
734 S A -1.2738
735 S A -1.7444
736 K A -2.8298
737 E A -3.4074
738 G A -3.1891
739 R A -3.4869
740 R A -3.3533
741 S A -2.5450
742 D A -2.1649
743 T A -0.8177
744 C A 0.1326
745 P A -0.1550
746 S A -0.6720
747 H A -1.2371
748 T A -0.3794
749 P A -0.0440
750 V A 0.3940
751 R A -1.9943
752 R A -2.5821
753 S A -1.7819
754 T A -1.4018
755 P A -1.5768
756 R A -2.4456
757 A A -1.8440
758 Q A -2.0828
759 D A -1.6469
760 V A 0.8699
761 W A 1.2302
762 Q A 0.6077
763 F A 1.1688
764 S A -0.4642
765 D A -1.8302
766 G A -1.7027
767 S A -1.3209
768 S A -1.1453
769 R A -1.7618
770 A A -0.5445
771 L A 0.6164
772 K A -0.0936
773 F A 1.4927
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.1847 6.6249 View CSV PDB
4.5 -0.2865 6.6249 View CSV PDB
5.0 -0.4167 6.6249 View CSV PDB
5.5 -0.5481 6.6249 View CSV PDB
6.0 -0.6549 6.6249 View CSV PDB
6.5 -0.7214 6.6249 View CSV PDB
7.0 -0.7487 6.6249 View CSV PDB
7.5 -0.7513 6.6249 View CSV PDB
8.0 -0.7423 6.6249 View CSV PDB
8.5 -0.7254 6.6249 View CSV PDB
9.0 -0.6987 6.6249 View CSV PDB