Project name: c86c6160e350f8

Status: done

Started: 2026-10-21 13:07:54
Settings
Chain sequence(s) MTIRHQGQQYRPRMAFLQKIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTGGDVLQWITQRLWISNLEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDYAIYLAKRNIKKKGILEEYEKENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWDLNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEPQETTKRSSTLPFMRRHLRSSPSPVILRQLEEEEKAREAANTVDITQPGQHLAPSPHLAVYTGTCVPPSPSSPFSPSCRSPRKPFASPSRFIRRPSIAICPSPSRVALEGSSGLEPKGEASWSGANSGPSVTENREPSADHSRPQPRAPPKARAALSLGRFLRRGCLASPVFARLSPKCPSVSHGKVQPLGDMGQQLPRLKPKKVANFFQIKMEMPTDSGTCLMDSDDPRAGESGDQTTEKEVICPWESLAEGKAG input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:19:10)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/c86c6160e350f8/tmp/folded.pdb                 (00:19:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:22:05)
Show buried residues

Minimal score value
-4.5469
Maximal score value
2.7987
Average score
-0.7945
Total score value
-536.3019

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.2963
2 T A 0.7735
3 I A 0.8967
4 R A -1.6072
5 H A -2.0257
6 Q A -1.9975
7 G A -1.5125
8 Q A -1.1730
9 Q A -1.4237
10 Y A -0.9549
11 R A -1.0101
12 P A -1.3189
13 R A -2.2301
14 M A 0.0000
15 A A -0.8346
16 F A -0.5756
17 L A 0.0000
18 Q A -1.9578
19 K A -2.2424
20 I A -1.0761
21 E A -1.9495
22 A A -1.8027
23 L A -1.4953
24 V A 0.0000
25 K A -2.7319
26 D A -2.3268
27 M A 0.0000
28 Q A -2.4498
29 N A -2.6075
30 P A -1.9658
31 E A -2.5934
32 T A -1.8754
33 G A -2.1428
34 V A 0.0000
35 R A -2.5557
36 M A -1.4672
37 H A -1.8388
38 N A -2.4110
39 Q A -1.6259
40 R A -1.2788
41 V A 1.1487
42 L A 2.4023
43 V A 2.4253
44 T A 0.5255
45 S A -0.3409
46 V A -0.5515
47 P A -1.1210
48 H A -1.8140
49 A A 0.0000
50 M A 0.0000
51 T A 0.0000
52 G A 0.0000
53 G A -1.2748
54 D A 0.0000
55 V A 0.0000
56 L A -1.3336
57 Q A -2.0033
58 W A -1.2516
59 I A 0.0000
60 T A -1.0382
61 Q A -1.5103
62 R A -1.1506
63 L A 0.1706
64 W A 0.5848
65 I A 0.0707
66 S A -0.6174
67 N A -1.3768
68 L A -0.1074
69 E A -1.6366
70 A A 0.0000
71 Q A -0.8644
72 N A -0.8194
73 L A -0.0424
74 G A 0.0000
75 N A 0.1595
76 F A 1.2513
77 I A 0.0000
78 V A 0.0000
79 K A 0.0474
80 Y A 0.3231
81 G A 0.0000
82 Y A 0.0000
83 I A 0.0000
84 Y A 0.0000
85 P A 0.0000
86 L A -0.6305
87 Q A -2.1815
88 D A -2.8968
89 P A -2.1826
90 K A -2.6295
91 N A -1.9827
92 L A -0.7411
93 I A -0.1073
94 L A 0.0000
95 K A -1.0648
96 P A -1.3981
97 D A -1.5047
98 S A -0.8778
99 S A -1.0258
100 L A -0.6341
101 Y A 0.0000
102 R A 0.0000
103 F A -0.1267
104 Q A 0.0000
105 T A 0.4367
106 P A 0.3822
107 Y A 1.3007
108 F A 0.7050
109 W A 0.0000
110 P A 0.0000
111 T A -0.0287
112 Q A -0.9862
113 Q A -0.8838
114 W A 0.2434
115 P A -0.4650
116 A A 0.0000
117 E A -2.2774
118 D A -1.8163
119 T A -1.6202
120 D A -2.0810
121 Y A 0.0000
122 A A 0.0000
123 I A 0.0000
124 Y A 0.0000
125 L A 0.0000
126 A A 0.0000
127 K A -1.0653
128 R A -1.1001
129 N A -1.4182
130 I A -1.0056
131 K A -1.7805
132 K A -2.6470
133 K A -2.5683
134 G A -2.0211
135 I A -1.2780
136 L A 0.0000
137 E A -3.0159
138 E A -3.3503
139 Y A -2.5078
140 E A 0.0000
141 K A -3.0747
142 E A -3.1921
143 N A -2.0987
144 Y A -1.8910
145 D A -2.5763
146 F A -1.4017
147 L A 0.0000
148 N A -2.2239
149 K A -2.6827
150 K A -2.3190
151 I A 0.0000
152 N A -1.9619
153 Y A -0.3418
154 K A -1.0525
155 W A -1.2065
156 D A -1.3436
157 F A -0.2824
158 V A 0.0000
159 I A -0.2754
160 M A -0.1364
161 Q A -0.8353
162 A A 0.0000
163 K A -1.7704
164 E A -1.7823
165 Q A -1.4037
166 Y A -2.0371
167 R A -3.4084
168 T A -2.4537
169 G A -2.9719
170 K A -4.0196
171 E A -4.1074
172 R A -3.7698
173 N A -3.6257
174 K A -3.1888
175 A A 0.0000
176 D A -2.3486
177 R A -2.2147
178 Y A -0.0642
179 A A -0.1177
180 L A 0.0095
181 D A -0.3993
182 C A -0.0815
183 Q A -0.0484
184 E A -0.3013
185 K A -0.8720
186 A A 0.0000
187 Y A 0.0112
188 W A 0.0000
189 L A 0.0000
190 V A 0.0000
191 H A -0.6866
192 R A -0.6517
193 S A -1.0275
194 P A -1.3034
195 P A -0.7876
196 G A -0.9788
197 M A -1.3485
198 N A -2.1341
199 N A -2.3298
200 V A -0.9588
201 L A -1.1420
202 D A -1.8297
203 Y A -0.5942
204 G A -0.2208
205 L A 0.6674
206 D A -0.5769
207 R A -0.7860
208 V A 0.4172
209 T A -0.4977
210 N A -1.3829
211 P A -1.4253
212 N A -1.8317
213 E A -1.6320
214 V A -0.4837
215 K A -2.5395
216 K A -2.6353
217 Q A -1.6371
218 T A -0.6179
219 V A 0.7334
220 T A -0.3571
221 A A -0.7566
222 V A 0.0130
223 R A -1.3219
224 K A -1.6206
225 E A -0.8403
226 I A 0.6166
227 M A 0.6032
228 Y A 1.3463
229 Y A 1.9294
230 Q A 0.7832
231 Q A 0.7623
232 A A 1.1836
233 L A 1.6332
234 M A 0.8236
235 R A -0.9570
236 S A -0.2646
237 T A -0.0983
238 V A 0.8046
239 K A -0.6378
240 S A -0.0124
241 S A 0.5930
242 V A 1.5610
243 S A 1.5600
244 L A 2.3963
245 G A 1.3601
246 G A 1.2544
247 I A 2.5414
248 V A 1.1812
249 K A -0.7955
250 Y A 0.6715
251 S A -0.4900
252 E A -2.0347
253 Q A -1.5086
254 F A -1.2354
255 S A -1.0345
256 S A -0.8676
257 N A -0.9570
258 D A -0.2533
259 A A 0.6020
260 I A 2.0111
261 M A 1.4588
262 S A 0.4111
263 G A 0.4031
264 C A 0.1974
265 L A -0.5531
266 P A -1.2392
267 S A -0.5383
268 N A 0.7257
269 P A 0.0000
270 W A 1.5048
271 I A 1.9562
272 T A 0.0347
273 D A -1.4936
274 D A -1.3313
275 T A -1.4603
276 Q A -1.6865
277 F A -0.4720
278 W A -0.9348
279 D A -2.0484
280 L A -1.0275
281 N A -0.9906
282 A A -1.3016
283 K A -1.8961
284 L A -0.7616
285 V A -1.0459
286 E A -1.5089
287 I A -0.3167
288 P A 0.0000
289 T A 0.0000
290 K A -1.2741
291 M A -0.9302
292 R A -1.0759
293 V A 0.0000
294 E A -1.4608
295 R A -1.5374
296 W A 0.0000
297 A A -0.4468
298 F A -0.1616
299 N A -0.1758
300 F A 0.0000
301 S A -0.7070
302 E A 0.0000
303 L A 0.0000
304 I A 0.0000
305 R A -2.0992
306 D A -1.8491
307 P A -1.4525
308 K A -1.5341
309 G A 0.0000
310 R A -1.4670
311 Q A -1.2876
312 S A -0.5576
313 F A 0.0000
314 Q A -1.2944
315 Y A -0.8026
316 F A 0.0000
317 L A 0.0000
318 K A -1.9576
319 K A -2.1160
320 E A -1.0546
321 F A 0.3725
322 S A -0.3904
323 G A -0.9257
324 E A -0.8554
325 N A -0.3712
326 L A 0.0000
327 G A -0.7193
328 F A 0.0000
329 W A -0.7595
330 E A -1.4343
331 A A -1.4104
332 C A 0.0000
333 E A -1.2857
334 D A -2.3203
335 L A 0.0000
336 K A -1.1230
337 Y A -0.1232
338 G A -1.8693
339 D A -3.0107
340 Q A -2.7997
341 S A -2.5973
342 K A -4.0279
343 V A 0.0000
344 K A -4.5469
345 E A -4.4396
346 K A -4.4279
347 A A 0.0000
348 E A -4.1210
349 E A -3.9385
350 I A 0.0000
351 Y A -1.6995
352 K A -2.9006
353 L A -1.8717
354 F A 0.0000
355 L A 0.0000
356 A A -1.0613
357 P A -0.6899
358 G A -1.0793
359 A A -1.3309
360 R A -2.2441
361 R A -1.4537
362 W A -0.4293
363 I A 0.0000
364 N A -1.2462
365 I A -1.0902
366 D A -2.1677
367 G A -1.9128
368 K A -2.0893
369 T A 0.0000
370 M A -0.9318
371 D A -1.1363
372 I A 0.0755
373 T A 0.0000
374 V A -0.4790
375 K A -1.4213
376 G A -1.0122
377 L A -1.8247
378 R A -2.7472
379 H A -2.4242
380 P A -2.5557
381 H A -2.0780
382 R A -1.9639
383 Y A 0.3672
384 V A 0.0000
385 L A 0.0000
386 D A -0.2622
387 A A -0.0036
388 A A 0.0000
389 Q A 0.0000
390 T A 0.0231
391 H A -0.2020
392 I A 0.0000
393 Y A 0.2005
394 M A -0.1221
395 L A -0.2228
396 M A 0.0000
397 K A -1.5432
398 K A -2.4297
399 D A -2.4262
400 S A 0.0000
401 Y A 0.0000
402 A A -1.6882
403 R A -1.9437
404 Y A 0.0000
405 L A -1.2151
406 K A -2.1897
407 S A 0.0000
408 P A -1.5338
409 I A -1.0472
410 Y A 0.0000
411 K A -2.8832
412 E A -2.8279
413 M A -1.6104
414 L A -1.3711
415 A A -1.6873
416 K A -2.0512
417 A A -1.4217
418 I A -0.5871
419 E A -2.1450
420 P A 0.0000
421 Q A -2.3018
422 E A -2.6675
423 T A -2.0730
424 T A -2.1679
425 K A -2.9943
426 R A -2.8716
427 S A -1.6344
428 S A -0.9499
429 T A 0.0683
430 L A 1.3354
431 P A 1.0292
432 F A 1.8403
433 M A 0.5360
434 R A -1.7575
435 R A -2.7647
436 H A -2.0430
437 L A -0.9912
438 R A -2.0705
439 S A -0.9045
440 S A -0.3750
441 P A 0.1108
442 S A 0.6686
443 P A 0.8311
444 V A 1.9414
445 I A 1.9935
446 L A 1.0309
447 R A -1.2433
448 Q A -1.2951
449 L A -0.3424
450 E A -2.3582
451 E A -3.8878
452 E A -4.1995
453 E A -3.7229
454 K A -4.3939
455 A A -3.4425
456 R A -4.3781
457 E A -3.6867
458 A A -2.0479
459 A A -1.6946
460 N A -2.0624
461 T A -0.6721
462 V A 0.8635
463 D A -0.4005
464 I A 1.1083
465 T A -0.0413
466 Q A -1.3508
467 P A -1.1465
468 G A -1.5687
469 Q A -1.7617
470 H A -0.9848
471 L A 0.6881
472 A A 0.3716
473 P A -0.2917
474 S A -0.3121
475 P A -0.5217
476 H A -0.2200
477 L A 1.5778
478 A A 1.7202
479 V A 2.6101
480 Y A 2.1896
481 T A 0.9042
482 G A 0.5717
483 T A 0.6475
484 C A 1.3073
485 V A 1.8385
486 P A 0.5769
487 P A -0.0162
488 S A -0.3912
489 P A -0.6307
490 S A -0.5902
491 S A -0.1326
492 P A 0.4565
493 F A 1.6164
494 S A 0.4992
495 P A -0.1520
496 S A -0.4370
497 C A -0.3490
498 R A -1.7289
499 S A -1.4254
500 P A -2.0176
501 R A -2.6663
502 K A -2.3106
503 P A -0.6258
504 F A 1.1097
505 A A 0.5181
506 S A -0.0686
507 P A -0.4409
508 S A -0.4568
509 R A -0.7258
510 F A 1.1231
511 I A 0.8880
512 R A -1.5310
513 R A -1.7673
514 P A -0.8778
515 S A 0.3043
516 I A 2.2541
517 A A 2.1142
518 I A 2.7987
519 C A 1.7804
520 P A 0.4275
521 S A -0.1647
522 P A -0.7245
523 S A -0.8545
524 R A -0.9509
525 V A 0.9718
526 A A 0.6131
527 L A 0.7327
528 E A -1.1437
529 G A -1.2151
530 S A -0.9324
531 S A -0.3155
532 G A -0.2860
533 L A 0.3301
534 E A -1.7065
535 P A -1.8579
536 K A -2.9045
537 G A -2.2073
538 E A -2.4595
539 A A -0.7781
540 S A -0.0271
541 W A 0.8961
542 S A 0.0968
543 G A -0.5914
544 A A -0.9194
545 N A -1.5516
546 S A -1.1188
547 G A -1.0269
548 P A -0.3166
549 S A 0.3937
550 V A 1.1964
551 T A -0.4257
552 E A -2.4984
553 N A -3.4141
554 R A -3.7783
555 E A -3.1225
556 P A -1.7755
557 S A -1.1122
558 A A -1.4287
559 D A -2.3183
560 H A -2.3144
561 S A -2.1083
562 R A -2.5678
563 P A -1.9710
564 Q A -2.2245
565 P A -1.7885
566 R A -2.2362
567 A A -1.0570
568 P A -1.0405
569 P A -1.1581
570 K A -2.2065
571 A A -1.7867
572 R A -2.1104
573 A A -0.6551
574 A A 0.3216
575 L A 1.7821
576 S A 0.9660
577 L A 1.3284
578 G A 0.2938
579 R A -0.6938
580 F A 1.3318
581 L A 0.6957
582 R A -1.8052
583 R A -1.8725
584 G A -0.8069
585 C A 0.7294
586 L A 1.6265
587 A A 0.9981
588 S A 0.8229
589 P A 1.2729
590 V A 2.3319
591 F A 2.4784
592 A A 0.8770
593 R A -0.4670
594 L A 0.5577
595 S A -0.3502
596 P A -0.8624
597 K A -1.4062
598 C A -0.1653
599 P A -0.0372
600 S A 0.6686
601 V A 1.3972
602 S A 0.0029
603 H A -1.1188
604 G A -1.5233
605 K A -1.5707
606 V A 0.2848
607 Q A -0.6141
608 P A 0.0342
609 L A 0.8204
610 G A -0.4273
611 D A -1.4546
612 M A -0.4322
613 G A -1.2153
614 Q A -1.5295
615 Q A -1.4009
616 L A 0.1590
617 P A -0.7044
618 R A -1.4883
619 L A -0.3220
620 K A -2.2933
621 P A -1.8950
622 K A -2.4188
623 K A -2.1122
624 V A 0.3361
625 A A -0.1282
626 N A -0.5040
627 F A 1.0416
628 F A 1.2407
629 Q A -0.1092
630 I A 0.5754
631 K A -1.0827
632 M A -0.1676
633 E A -1.1317
634 M A -0.0879
635 P A -0.6299
636 T A -1.1162
637 D A -1.9888
638 S A -1.2760
639 G A -0.7006
640 T A 0.3080
641 C A 1.5599
642 L A 1.8978
643 M A 1.0601
644 D A -1.6048
645 S A -2.0894
646 D A -3.2661
647 D A -3.3820
648 P A -2.3953
649 R A -2.3846
650 A A -1.5834
651 G A -1.8182
652 E A -2.4568
653 S A -2.0007
654 G A -2.2957
655 D A -2.8853
656 Q A -2.5192
657 T A -1.9802
658 T A -2.3589
659 E A -3.1655
660 K A -2.7206
661 E A -1.6653
662 V A 1.3199
663 I A 2.3269
664 C A 1.8183
665 P A 0.9043
666 W A 0.5811
667 E A -0.6937
668 S A -0.2742
669 L A 0.5167
670 A A -0.6405
671 E A -2.0465
672 G A -2.1271
673 K A -2.3767
674 A A -1.1050
675 G A -0.7834
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.5897 5.0403 View CSV PDB
4.5 -0.6639 4.956 View CSV PDB
5.0 -0.7542 4.9486 View CSV PDB
5.5 -0.8406 4.9486 View CSV PDB
6.0 -0.9008 4.9486 View CSV PDB
6.5 -0.9204 4.9486 View CSV PDB
7.0 -0.9016 4.9486 View CSV PDB
7.5 -0.8583 4.9486 View CSV PDB
8.0 -0.8017 4.9486 View CSV PDB
8.5 -0.736 4.9486 View CSV PDB
9.0 -0.6615 4.9486 View CSV PDB