Project name: cee690a06a062d

Status: done

Started: 2026-11-11 09:24:18
Settings
Chain sequence(s) MASGGGGCSASERLPPPFPGMDPESEGAAGASEPEAGDSDTEGEDIFTGAAAATKPQSPKKTTSLFPIKNGSKENGIHEDQDQEPQDLFADATVELSLDSTQNNQKTMPGKTLTSHSPQEATNSPKPQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQALSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDSFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESEARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYWEAFLPEAKAIS input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:03)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:10)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:10)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:29:56)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/cee690a06a062d/tmp/folded.pdb                 (00:29:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:32:51)
Show buried residues

Minimal score value
-5.018
Maximal score value
2.7436
Average score
-1.1705
Total score value
-610.9859

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0342
2 A A 0.2987
3 S A -0.2850
4 G A -0.9202
5 G A -1.0929
6 G A -0.8819
7 G A -0.4892
8 C A 0.3199
9 S A 0.0357
10 A A -0.3718
11 S A -1.3855
12 E A -2.4298
13 R A -2.1075
14 L A -0.0081
15 P A -0.1271
16 P A 0.0325
17 P A 0.5577
18 F A 1.5365
19 P A 0.5776
20 G A -0.0228
21 M A -0.1909
22 D A -1.8170
23 P A -1.8217
24 E A -2.7680
25 S A -2.2238
26 E A -2.5174
27 G A -1.3650
28 A A -0.6150
29 A A -0.2184
30 G A -0.4448
31 A A -0.6525
32 S A -1.2271
33 E A -2.4842
34 P A -2.1699
35 E A -2.6715
36 A A -1.8034
37 G A -2.0472
38 D A -2.7366
39 S A -2.2837
40 D A -2.9020
41 T A -2.4285
42 E A -3.1666
43 G A -2.3920
44 E A -2.3946
45 D A -0.7593
46 I A 1.8686
47 F A 2.2320
48 T A 0.9498
49 G A 0.3599
50 A A 0.1088
51 A A 0.0049
52 A A -0.1155
53 A A -0.3789
54 T A -1.0253
55 K A -2.1674
56 P A -1.7648
57 Q A -2.0985
58 S A -1.7561
59 P A -1.8919
60 K A -2.8515
61 K A -2.6813
62 T A -1.4422
63 T A -0.4267
64 S A 0.7705
65 L A 2.5210
66 F A 2.7436
67 P A 1.5006
68 I A 1.2448
69 K A -1.3523
70 N A -1.9113
71 G A -1.7558
72 S A -2.1067
73 K A -3.1383
74 E A -3.4817
75 N A -2.2872
76 G A -0.6979
77 I A 0.5857
78 H A -1.3913
79 E A -2.9696
80 D A -3.8672
81 Q A -3.8475
82 D A -3.7200
83 Q A -3.3966
84 E A -3.5463
85 P A -2.2133
86 Q A -2.1580
87 D A -1.3869
88 L A 1.0284
89 F A 1.6447
90 A A 0.1817
91 D A -0.8140
92 A A -0.2420
93 T A 0.0888
94 V A 1.0105
95 E A -0.1097
96 L A 1.2091
97 S A 0.6086
98 L A 0.7156
99 D A -1.0324
100 S A -1.0249
101 T A -1.3820
102 Q A -2.1899
103 N A -2.7373
104 N A -3.0903
105 Q A -2.9812
106 K A -2.4036
107 T A -0.6791
108 M A 0.4551
109 P A -0.3230
110 G A -1.2456
111 K A -1.7031
112 T A -0.2702
113 L A 1.0875
114 T A 0.4230
115 S A -0.4387
116 H A -1.2724
117 S A -1.1612
118 P A -1.5066
119 Q A -2.2418
120 E A -2.4429
121 A A -1.4297
122 T A -1.1586
123 N A -1.6600
124 S A -1.4250
125 P A -1.7033
126 K A -2.4706
127 P A -1.8274
128 Q A -1.9419
129 P A -1.5927
130 S A -1.2771
131 Y A -0.9539
132 E A -3.3565
133 E A -4.0451
134 L A -3.2105
135 E A -4.4351
136 E A -5.0180
137 E A -4.7522
138 E A -4.0794
139 Q A -3.9710
140 E A -3.8433
141 D A -3.2784
142 Q A -2.8298
143 F A -1.7886
144 D A -2.2082
145 L A 0.0000
146 T A -0.9764
147 V A 0.0000
148 G A -0.5667
149 I A 0.0000
150 T A -1.6988
151 D A -2.8990
152 P A -2.3690
153 E A -2.8473
154 K A -2.5498
155 I A -1.1756
156 G A -1.6760
157 D A -2.5561
158 G A -1.4417
159 M A -0.3931
160 N A -1.4711
161 A A -1.5374
162 Y A -0.8976
163 V A 0.0000
164 A A 0.0000
165 Y A 0.0000
166 K A -2.0908
167 V A 0.0000
168 T A -0.6833
169 T A 0.0000
170 Q A -1.6909
171 T A 0.0000
172 S A -1.1416
173 L A -0.6873
174 P A -0.5149
175 M A -0.5227
176 F A 0.0000
177 R A -2.1957
178 S A -1.8098
179 R A -2.0368
180 Q A -2.0579
181 F A -0.8850
182 A A -0.9283
183 V A 0.0000
184 K A -2.7460
185 R A 0.0000
186 R A -1.2067
187 F A -0.1588
188 S A -0.3724
189 D A -0.7204
190 F A 0.0000
191 L A 0.0000
192 G A 0.0000
193 L A 0.0000
194 Y A -1.0332
195 E A -1.8654
196 K A -2.2178
197 L A 0.0000
198 S A -2.0341
199 E A -3.1200
200 K A -2.3750
201 H A -1.5327
202 S A -1.4433
203 Q A -2.3521
204 N A -1.4015
205 G A 0.0000
206 F A -0.2493
207 I A 0.0000
208 V A 0.0000
209 P A 0.0000
210 P A -0.3989
211 P A 0.0000
212 P A -1.3027
213 E A -1.8259
214 K A -0.7475
215 S A 0.6286
216 L A 2.0834
217 I A 2.6097
218 G A 0.0000
219 M A 0.9432
220 T A 0.3233
221 K A -1.0885
222 V A 0.0000
223 K A -2.2886
224 V A -0.7534
225 G A -2.2285
226 K A -3.4994
227 E A -3.8226
228 D A -3.6219
229 S A -1.9879
230 S A -1.7400
231 S A 0.0000
232 A A -1.4524
233 E A -1.7200
234 F A -0.5967
235 L A -1.0056
236 E A -1.5453
237 K A -1.1423
238 R A 0.0000
239 R A -1.2186
240 A A 0.0000
241 A A -0.9257
242 L A 0.0000
243 E A -0.8249
244 R A -1.0320
245 Y A 0.0000
246 L A 0.0000
247 Q A -1.0334
248 R A -0.9186
249 I A 0.0000
250 V A 0.0000
251 N A -1.3021
252 H A 0.0000
253 P A -0.7659
254 T A -0.4504
255 M A 0.0000
256 L A 0.0000
257 Q A -1.3889
258 D A 0.0000
259 P A -1.0745
260 D A -1.1211
261 V A 0.0000
262 R A -1.6185
263 E A -1.7932
264 F A 0.0000
265 L A 0.0000
266 E A 0.0000
267 K A -2.5946
268 E A -3.3302
269 E A -3.4148
270 L A -2.2237
271 P A -1.2361
272 R A -1.8105
273 A A -0.5639
274 V A 0.8162
275 G A -0.0282
276 T A 0.0000
277 Q A -0.9786
278 A A -0.4463
279 L A -0.5141
280 S A -0.5493
281 G A -0.3025
282 A A 0.1106
283 G A 0.5733
284 L A 2.1331
285 L A 2.0580
286 K A 0.0517
287 M A 0.9876
288 F A 1.3263
289 N A -1.1611
290 K A -1.3410
291 A A -0.3599
292 T A -0.7903
293 D A -1.6448
294 A A -0.5932
295 V A 0.9026
296 S A -0.0174
297 K A -1.0043
298 M A 0.5944
299 T A 0.4960
300 I A 0.1116
301 K A -1.4976
302 M A -1.1263
303 N A -1.7861
304 E A -1.3383
305 S A -0.6648
306 D A -0.4731
307 I A 0.4812
308 W A -0.4437
309 F A 0.0000
310 E A -2.8055
311 E A -3.0654
312 K A -2.4872
313 L A -2.4446
314 Q A -3.5169
315 E A -3.6989
316 V A 0.0000
317 E A -2.7886
318 C A -2.4866
319 E A -3.0780
320 E A 0.0000
321 Q A -3.6041
322 R A -3.6898
323 L A 0.0000
324 R A -3.1363
325 K A -2.7268
326 L A -0.8171
327 H A -1.0526
328 A A -0.3316
329 V A 0.9205
330 V A 0.0000
331 E A -1.1323
332 T A -0.6671
333 L A -0.8022
334 V A 0.0000
335 N A -2.6965
336 H A -2.4967
337 R A -2.4298
338 K A -2.8842
339 E A -2.5591
340 L A -0.9359
341 A A 0.0000
342 L A 0.5541
343 N A 0.2526
344 T A 0.0000
345 A A 0.3233
346 L A 1.8256
347 F A 1.7292
348 A A 0.0000
349 K A -0.1578
350 S A 1.0092
351 L A 0.0000
352 A A 0.3322
353 M A 1.3120
354 L A 1.3514
355 G A 0.0000
356 S A -0.2501
357 S A -0.4571
358 E A -1.6085
359 D A -2.6793
360 N A -2.3193
361 T A -1.4989
362 A A -0.7966
363 L A -0.5272
364 S A -1.2162
365 R A -1.9437
366 A A 0.0000
367 L A -0.3523
368 S A -0.8900
369 Q A -1.4643
370 L A -0.7148
371 A A 0.0000
372 E A -2.5153
373 V A 0.0000
374 E A -1.4263
375 E A -2.6508
376 K A -2.6129
377 I A 0.0000
378 E A -1.9010
379 Q A -2.5338
380 L A 0.0000
381 H A -1.9027
382 Q A -2.3369
383 E A -2.5722
384 Q A 0.0000
385 A A 0.0000
386 N A -1.4654
387 N A -0.8561
388 D A 0.0000
389 S A -0.7110
390 F A -0.1671
391 L A 0.0000
392 L A -0.0822
393 A A 0.0000
394 E A -0.7803
395 L A 0.0000
396 L A 0.0000
397 S A -0.5892
398 D A -0.6572
399 Y A 0.0000
400 I A -0.9181
401 R A -0.3610
402 L A 0.0000
403 L A 0.0000
404 A A -0.2332
405 I A -0.0803
406 V A 0.0000
407 R A -1.2477
408 A A -0.9459
409 A A 0.0000
410 F A 0.0000
411 D A -2.3931
412 Q A -1.9456
413 R A 0.0000
414 M A -1.5506
415 K A -2.5245
416 T A -2.3678
417 W A -1.6178
418 Q A -1.7494
419 R A -2.3771
420 W A -2.1531
421 Q A -1.9085
422 D A -2.5001
423 A A 0.0000
424 Q A -2.2542
425 A A -1.9730
426 T A -2.1533
427 L A -2.9315
428 Q A -3.4061
429 K A -3.4318
430 K A -3.1603
431 R A -3.6726
432 E A -3.3860
433 S A -2.3127
434 E A 0.0000
435 A A -1.2126
436 R A -1.8020
437 L A -1.3588
438 L A 0.1030
439 W A 0.5623
440 A A -0.3659
441 N A -1.6196
442 K A -2.3975
443 P A -2.4701
444 D A -3.4922
445 K A -3.4566
446 L A -2.9370
447 Q A -3.5144
448 Q A -3.5601
449 A A 0.0000
450 K A -3.3006
451 D A -3.7293
452 E A -3.1553
453 I A 0.0000
454 T A -2.8293
455 E A -3.3648
456 W A -2.9901
457 E A -3.3127
458 S A -2.5299
459 R A -2.8554
460 V A 0.0000
461 T A -2.1711
462 Q A -2.7407
463 Y A -2.5669
464 E A -2.9909
465 R A -3.6875
466 D A -2.6343
467 F A -2.5100
468 E A -3.3384
469 R A -2.7807
470 I A 0.0000
471 S A -1.4539
472 T A -1.1825
473 V A -0.7379
474 V A 0.0000
475 R A -0.6744
476 K A -1.1069
477 E A 0.0000
478 V A 0.0000
479 T A -1.5404
480 R A -1.8449
481 F A 0.0000
482 E A -2.4702
483 K A -2.8307
484 E A -2.8720
485 K A -2.4398
486 S A -2.6380
487 K A -3.5765
488 D A -2.4959
489 F A -1.6372
490 K A -2.8065
491 N A -2.5831
492 H A -1.4183
493 V A -0.3576
494 M A -0.6592
495 K A -1.5844
496 Y A 0.0000
497 L A 0.6228
498 E A -1.2385
499 T A -0.8850
500 L A 0.0838
501 L A 0.0119
502 H A -1.3614
503 S A -1.6236
504 Q A -1.9440
505 Q A -2.2813
506 Q A -2.2977
507 L A -1.5216
508 A A -1.7775
509 K A -2.6391
510 Y A -1.4249
511 W A -0.4549
512 E A -1.8264
513 A A -0.8696
514 F A -0.6140
515 L A -0.1974
516 P A -0.7317
517 E A -1.0484
518 A A -0.4788
519 K A -1.3354
520 A A -0.4378
521 I A 0.3905
522 S A -0.0385
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.7729 6.2724 View CSV PDB
4.5 -0.8787 6.2724 View CSV PDB
5.0 -1.0163 6.2724 View CSV PDB
5.5 -1.1592 6.2724 View CSV PDB
6.0 -1.2781 6.2724 View CSV PDB
6.5 -1.3499 6.2724 View CSV PDB
7.0 -1.3677 6.2724 View CSV PDB
7.5 -1.3451 6.2724 View CSV PDB
8.0 -1.3002 6.2724 View CSV PDB
8.5 -1.2428 6.2724 View CSV PDB
9.0 -1.1749 6.2724 View CSV PDB