Project name: dd6e805a9a5985

Status: done

Started: 2026-10-21 12:58:16
Settings
Chain sequence(s) MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREKTTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIRCLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPVSTTAVEGAE input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:07:26)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/dd6e805a9a5985/tmp/folded.pdb                 (00:07:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:14)
Show buried residues

Minimal score value
-3.7955
Maximal score value
2.7113
Average score
-0.7387
Total score value
-372.2855

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6861
2 A A 0.0000
3 A A -0.0650
4 Q A -0.3782
5 A A 0.0000
6 L A -0.8110
7 A A -0.6317
8 L A -0.8891
9 L A 0.0000
10 R A -1.8941
11 E A -2.0745
12 V A 0.0000
13 A A -1.9763
14 R A -2.4888
15 L A -1.4963
16 E A -1.8468
17 A A -1.2936
18 P A 0.0000
19 L A -1.2135
20 E A -2.2552
21 E A -1.8071
22 L A 0.0000
23 R A -1.7600
24 A A -1.2330
25 L A 0.0000
26 H A -1.2779
27 S A -0.9934
28 V A 0.0000
29 L A 0.0000
30 Q A -1.3892
31 A A -0.4277
32 V A 0.0000
33 P A -0.9920
34 L A -1.6591
35 N A -2.6014
36 E A -2.3519
37 L A 0.0000
38 R A -3.7955
39 Q A -3.0296
40 Q A -2.4037
41 A A 0.0000
42 A A -1.9481
43 E A -2.6860
44 L A 0.0000
45 R A -2.4768
46 L A 0.0000
47 G A -0.9335
48 P A -0.8448
49 L A 0.0000
50 F A -0.8735
51 S A -0.9741
52 L A 0.0000
53 L A 0.0000
54 N A -2.8984
55 E A -3.4726
56 N A -3.4331
57 H A -3.0357
58 R A -3.0905
59 E A -2.0022
60 K A -2.0299
61 T A 0.0000
62 T A -0.8254
63 L A -0.7458
64 C A 0.0000
65 V A -0.3852
66 S A -0.8378
67 I A 0.0000
68 L A 0.0000
69 E A -2.1639
70 R A -1.6816
71 L A 0.0000
72 L A 0.0000
73 Q A -2.0280
74 A A 0.0000
75 M A 0.0000
76 E A -2.4003
77 P A -1.9707
78 V A -1.7105
79 H A -1.9633
80 V A 0.0000
81 A A 0.0000
82 R A -2.5867
83 N A -2.1919
84 L A -1.2622
85 R A -1.3105
86 V A -0.0004
87 D A -0.6519
88 L A 0.0000
89 Q A -0.6925
90 R A -1.1505
91 G A 0.0000
92 L A 0.0000
93 I A 1.2812
94 H A 0.0000
95 P A -0.6127
96 D A -1.0097
97 D A -0.6413
98 S A -0.2653
99 V A 0.0000
100 K A -0.0857
101 I A 0.1299
102 L A 0.0000
103 T A 0.0000
104 L A 0.0000
105 S A -0.6441
106 Q A 0.0000
107 I A 0.0000
108 G A 0.0000
109 R A -1.4808
110 I A 0.0000
111 V A 0.0000
112 E A -2.3966
113 N A -2.1302
114 S A -1.6769
115 D A -2.2126
116 A A 0.0000
117 V A 0.0000
118 T A -0.9815
119 E A -1.4580
120 I A 0.0000
121 L A -0.7505
122 N A -1.4893
123 N A -1.3196
124 A A -1.2787
125 E A -1.7312
126 L A 0.0000
127 L A 0.0000
128 K A -1.0035
129 Q A -0.1958
130 I A 0.0000
131 V A 0.0000
132 Y A 1.0259
133 C A 0.0000
134 I A 0.0000
135 G A -0.2428
136 G A -0.8105
137 E A -1.6124
138 N A -0.9155
139 L A 0.5219
140 S A -0.2168
141 V A 0.0000
142 A A 0.0000
143 K A -1.5080
144 A A -0.9160
145 A A 0.0000
146 I A 0.0000
147 K A -2.4271
148 S A 0.0000
149 L A 0.0000
150 S A -0.7149
151 R A -1.2629
152 I A 0.0000
153 S A 0.0000
154 L A 1.0630
155 T A -0.1213
156 Q A -1.2975
157 A A -0.7850
158 G A 0.0000
159 L A 0.0000
160 E A -1.7550
161 A A -1.3901
162 L A 0.0000
163 F A 0.0000
164 E A -2.5661
165 S A -2.0275
166 N A -2.3672
167 L A 0.0000
168 L A -1.8237
169 D A -2.5996
170 D A 0.0000
171 L A 0.0000
172 K A -1.8525
173 S A -1.3751
174 V A 0.0000
175 M A 0.0000
176 K A -2.3381
177 T A -1.5018
178 N A -1.6291
179 D A -1.4363
180 I A 0.6843
181 V A 0.0000
182 R A -1.0526
183 Y A -0.1209
184 R A 0.0000
185 V A 0.0000
186 Y A 0.0000
187 E A -1.8174
188 L A 0.0000
189 I A 0.0000
190 I A 0.0000
191 E A -0.8716
192 I A 0.0000
193 S A 0.0000
194 S A 0.3007
195 V A 1.3864
196 S A -0.0805
197 P A -1.3177
198 E A -2.2510
199 S A 0.0000
200 L A 0.0000
201 N A -1.8900
202 Y A -1.3195
203 C A 0.0000
204 T A -0.7085
205 T A -0.6076
206 S A 0.0000
207 G A -0.3003
208 L A 0.0000
209 V A 0.0000
210 T A -0.9842
211 Q A -1.2549
212 L A 0.0000
213 L A 0.0000
214 R A -2.3972
215 E A -1.8845
216 L A 0.0000
217 T A -1.6320
218 G A -2.1091
219 E A -2.7292
220 D A -2.1271
221 V A 0.3585
222 L A 1.5772
223 V A -0.1456
224 R A 0.0000
225 A A 0.4876
226 T A 0.1439
227 C A 0.0000
228 I A 0.0000
229 E A -2.1169
230 M A 0.0000
231 V A 0.0000
232 T A -0.6694
233 S A -0.5131
234 L A 0.0000
235 A A 0.0000
236 Y A 0.6851
237 T A 0.0407
238 H A -1.3514
239 H A -0.9720
240 G A 0.0000
241 R A -1.3342
242 Q A -2.0063
243 Y A -1.5449
244 L A 0.0000
245 A A -1.6113
246 Q A -2.1854
247 E A -2.1282
248 G A -1.6339
249 V A 0.0000
250 I A 0.0000
251 D A -2.1333
252 Q A -1.3746
253 I A 0.0000
254 S A 0.0000
255 N A -0.9819
256 I A -0.3964
257 I A 0.0000
258 V A 0.7868
259 G A -0.3241
260 A A 0.0000
261 D A -1.5282
262 S A -0.9012
263 D A -0.5437
264 P A 0.2787
265 F A 2.0517
266 S A 0.8562
267 S A 1.0594
268 F A 2.7113
269 Y A 0.0000
270 L A 0.0000
271 P A 0.1199
272 G A -0.4952
273 F A 0.0000
274 V A 0.0000
275 K A -1.1591
276 F A 0.0000
277 F A 0.0000
278 G A 0.0000
279 N A -0.0010
280 L A 0.0000
281 A A 0.0000
282 V A 0.3513
283 M A -0.0963
284 D A -1.7013
285 S A -1.5641
286 P A 0.0000
287 Q A -2.6177
288 Q A -3.1032
289 I A 0.0000
290 C A 0.0000
291 E A -3.3617
292 R A -3.3056
293 Y A 0.0000
294 P A -1.4726
295 I A -0.3116
296 F A 0.0000
297 V A 0.0000
298 E A -1.0262
299 K A 0.0000
300 V A 0.0000
301 F A 0.0000
302 E A -1.8029
303 M A 0.0000
304 I A 0.0000
305 E A -1.9261
306 S A -1.5275
307 Q A -1.6898
308 D A -1.2933
309 P A -0.9872
310 T A -0.2197
311 M A -0.3944
312 I A 0.0000
313 G A 0.0000
314 V A -0.2999
315 A A 0.0000
316 V A 0.0000
317 D A -0.7290
318 T A 0.0000
319 V A 0.0000
320 G A 0.0000
321 I A 0.5569
322 L A 0.0000
323 G A 0.0000
324 S A 0.1741
325 N A -0.4200
326 V A -0.3892
327 E A -1.2950
328 G A 0.0000
329 K A 0.0000
330 Q A -1.7539
331 V A 0.0000
332 L A 0.0000
333 Q A -2.1528
334 K A -2.3956
335 T A -1.9150
336 G A -2.0138
337 T A -2.1731
338 R A -2.7367
339 F A 0.0000
340 E A -3.1228
341 R A -3.1846
342 L A 0.0000
343 L A 0.0000
344 M A -1.4558
345 R A -1.3456
346 I A 0.0000
347 G A 0.0000
348 H A -1.5749
349 Q A -1.5290
350 S A 0.0000
351 K A -2.4039
352 N A -2.2515
353 A A -1.5132
354 P A -1.1151
355 V A -1.0803
356 E A -1.9726
357 L A 0.0000
358 K A -1.7341
359 I A -1.3314
360 R A -1.4391
361 C A 0.0000
362 L A 0.0000
363 D A -1.7218
364 A A 0.0000
365 I A 0.0000
366 S A -0.6015
367 S A -0.2224
368 L A 0.0000
369 L A 0.0000
370 Y A 0.6700
371 L A 0.0000
372 P A -0.7508
373 P A -1.4653
374 E A -2.1999
375 Q A -1.6447
376 Q A -1.7973
377 T A -2.1900
378 D A -3.1757
379 D A -3.3583
380 L A 0.0000
381 L A -2.1993
382 R A -3.2516
383 M A -2.0740
384 T A 0.0000
385 E A -2.0056
386 S A -1.4359
387 W A 0.0000
388 F A 0.0000
389 S A -1.3278
390 S A -1.5980
391 L A 0.0000
392 S A -1.7999
393 R A -2.6382
394 D A -2.6477
395 P A -1.7494
396 L A 0.0000
397 E A -2.6714
398 L A 0.0000
399 F A 0.0000
400 R A -1.3866
401 G A -1.4255
402 I A 0.0000
403 S A 0.0000
404 S A -0.3776
405 Q A -0.6593
406 P A -0.2630
407 F A 0.2307
408 P A -0.9687
409 E A -1.5303
410 L A 0.0000
411 H A 0.0000
412 C A -0.7051
413 A A 0.0000
414 A A 0.0000
415 L A 0.0000
416 K A -1.1433
417 V A 0.0000
418 F A 0.0000
419 T A -0.5123
420 A A 0.0000
421 I A 0.0000
422 A A 0.0000
423 N A -0.6981
424 Q A 0.0000
425 P A -0.8916
426 W A 0.0000
427 A A 0.0000
428 Q A 0.0000
429 K A -1.2801
430 L A -0.4169
431 M A 0.0000
432 F A -0.1561
433 N A -1.1713
434 S A -0.8800
435 P A -0.8061
436 G A -1.0399
437 F A 0.0000
438 V A -0.8886
439 E A -2.0568
440 Y A -0.8369
441 V A 0.0000
442 V A -0.6332
443 D A -0.9285
444 R A -0.2372
445 S A 0.1701
446 V A 0.7871
447 E A 0.0000
448 H A -1.4342
449 D A -1.9461
450 K A -2.4172
451 A A -1.8319
452 S A 0.0000
453 K A -1.5298
454 D A -1.9012
455 A A 0.0000
456 K A 0.0000
457 Y A -0.8426
458 E A -1.6825
459 L A 0.0000
460 V A 0.0000
461 K A -1.3773
462 A A -0.9671
463 L A 0.0000
464 A A 0.0000
465 N A -1.9358
466 S A -1.6212
467 K A -2.3276
468 T A -1.7175
469 I A 0.0000
470 A A -1.4882
471 E A -2.2029
472 I A -1.3564
473 F A 0.0000
474 G A -1.0350
475 N A -1.4202
476 P A -0.5809
477 N A -0.4925
478 Y A -0.4686
479 L A 0.4976
480 R A -0.4742
481 L A 0.0000
482 R A -0.7961
483 T A -0.4490
484 Y A 0.0000
485 L A -0.7269
486 S A -0.8760
487 E A -0.7157
488 G A 0.0005
489 P A -0.0226
490 Y A 1.1794
491 Y A 1.3578
492 V A 1.5584
493 K A -0.3551
494 P A 0.2609
495 V A 1.3125
496 S A 0.3288
497 T A 0.5181
498 T A 0.3334
499 A A 0.2367
500 V A 0.7564
501 E A -1.3720
502 G A -1.2625
503 A A -1.2467
504 E A -2.1227
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.5467 5.7772 View CSV PDB
4.5 -0.6198 5.7743 View CSV PDB
5.0 -0.7107 5.7743 View CSV PDB
5.5 -0.8048 5.7743 View CSV PDB
6.0 -0.8883 5.7743 View CSV PDB
6.5 -0.9499 5.7743 View CSV PDB
7.0 -0.9851 5.7743 View CSV PDB
7.5 -1.0001 5.7743 View CSV PDB
8.0 -1.0031 5.7743 View CSV PDB
8.5 -0.9977 5.7743 View CSV PDB
9.0 -0.9839 5.7743 View CSV PDB