Project name: e5eae43f6f2aa

Status: done

Started: 2026-10-21 12:28:18
Settings
Chain sequence(s) MSFRKEDGVSSLCQKALHIITELCFAGQVEWDKCSGIFPADRSGQGGGGTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKLVAPNLSVLPQSISSAPTEVFETEEKKEVEENEKPAPKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQRQTTEPTSSSRHNSFRRHLPRQMNVSSVDFSVGTEPILQRGETRTSIGRIKPELYKQKSVDSEGNRKDDVKTCGKLNFALQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKIYLLPDRKKKFQTRVHRKTLNPLFDELFQFPVVYDQLSNRKLHFSIYDFDRFSRHDMIGEVILDNLFEVSDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLCIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLELPGRATSFDSQGSCSSPRPPSTP input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:11:36)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/e5eae43f6f2aa/tmp/folded.pdb                  (00:11:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:18:43)
Show buried residues

Minimal score value
-4.4693
Maximal score value
5.4283
Average score
-0.5847
Total score value
-305.8232

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3762
2 S A 0.6571
3 F A 0.5868
4 R A -2.6164
5 K A -3.3855
6 E A -3.5228
7 D A -3.1123
8 G A -1.2565
9 V A 0.7916
10 S A -0.1347
11 S A -0.3334
12 L A 1.1511
13 C A 0.9318
14 Q A -0.6331
15 K A -1.0664
16 A A 0.0846
17 L A 0.6875
18 H A -0.4169
19 I A 0.3750
20 I A 1.0657
21 T A 0.6120
22 E A -0.4453
23 L A 0.5841
24 C A 0.6318
25 F A 1.6205
26 A A 0.3912
27 G A -0.3295
28 Q A -0.8110
29 V A -0.4783
30 E A -2.1795
31 W A -0.9820
32 D A -2.6273
33 K A -2.5640
34 C A 0.0000
35 S A -1.1423
36 G A -0.6531
37 I A 0.7358
38 F A 0.3068
39 P A -0.6304
40 A A -1.2339
41 D A -2.7006
42 R A -2.9286
43 S A -2.0048
44 G A -1.7114
45 Q A -1.8567
46 G A -1.7256
47 G A -1.6978
48 G A -1.3121
49 G A -0.7217
50 T A -0.4614
51 D A -0.3250
52 I A 1.9888
53 S A 1.9937
54 V A 2.8947
55 S A 2.8080
56 L A 4.0598
57 L A 4.4285
58 A A 3.8496
59 V A 4.3153
60 V A 4.9909
61 V A 4.3658
62 S A 3.5706
63 F A 4.4852
64 C A 3.7522
65 G A 3.3505
66 L A 4.1732
67 A A 3.8706
68 L A 4.4708
69 L A 4.7718
70 V A 5.4283
71 V A 5.4092
72 S A 4.4701
73 L A 5.2435
74 F A 5.1648
75 V A 4.1788
76 F A 4.5084
77 W A 3.3782
78 K A 1.6167
79 L A 2.9614
80 C A 2.3111
81 W A 1.4125
82 P A 0.3309
83 C A 0.9162
84 W A 0.9156
85 K A -1.0437
86 S A -0.5798
87 K A -0.6922
88 L A 1.3506
89 V A 2.0259
90 A A 0.6543
91 P A -0.1282
92 N A -0.6862
93 L A 1.1406
94 S A 1.5310
95 V A 2.6917
96 L A 1.9855
97 P A 0.2058
98 Q A -0.7123
99 S A 0.0610
100 I A 1.5265
101 S A 0.6748
102 S A 0.0650
103 A A -0.2426
104 P A -0.6717
105 T A -0.6721
106 E A -0.7250
107 V A 1.2918
108 F A 1.3231
109 E A -0.8780
110 T A -1.6009
111 E A -3.4140
112 E A -3.8851
113 K A -4.2709
114 K A -3.4824
115 E A -2.5820
116 V A -0.7445
117 E A -2.6425
118 E A -3.4092
119 N A -3.7603
120 E A -3.6911
121 K A -2.9695
122 P A -1.5251
123 A A -0.9216
124 P A -0.8394
125 K A -1.4953
126 A A -0.2705
127 I A 0.6755
128 E A -0.8964
129 P A -0.1358
130 A A 0.2389
131 I A 1.4131
132 K A 0.1008
133 I A 1.3394
134 S A -0.1443
135 H A -0.9994
136 T A -1.0136
137 S A -0.7770
138 P A -0.9287
139 D A -1.0437
140 I A 0.9445
141 P A -0.0517
142 A A -0.5317
143 E A -1.0933
144 V A 0.6500
145 Q A -1.0016
146 T A -1.0809
147 A A -0.4733
148 L A 0.4611
149 K A -1.5116
150 E A -2.0454
151 H A -1.2088
152 L A 0.5813
153 I A 0.4182
154 K A -1.9022
155 H A -1.2020
156 A A -0.7253
157 R A -1.7827
158 V A -0.3919
159 Q A -1.9327
160 R A -2.8289
161 Q A -2.2368
162 T A -1.5870
163 T A -1.5201
164 E A -2.0379
165 P A -1.2707
166 T A -0.8771
167 S A -0.9367
168 S A -1.1757
169 S A -1.7597
170 R A -2.8749
171 H A -2.3261
172 N A -2.1623
173 S A -1.3698
174 F A -0.0590
175 R A -2.1087
176 R A -2.4902
177 H A -1.6502
178 L A -0.3471
179 P A -1.0447
180 R A -2.0250
181 Q A -1.7754
182 M A -0.2051
183 N A -0.2111
184 V A 1.2507
185 S A 0.6563
186 S A 0.5506
187 V A 1.1650
188 D A 0.0866
189 F A 1.7602
190 S A 1.3214
191 V A 1.5060
192 G A -0.2137
193 T A -1.0065
194 E A -1.5359
195 P A -0.0287
196 I A 2.0113
197 L A 1.4315
198 Q A -1.2470
199 R A -2.7263
200 G A -2.6965
201 E A -3.0689
202 T A -1.9912
203 R A -2.2283
204 T A -0.7662
205 S A 0.0210
206 I A 1.2685
207 G A -0.1083
208 R A -1.0591
209 I A 0.6006
210 K A -1.3925
211 P A -1.1698
212 E A -1.7555
213 L A 0.1924
214 Y A -0.0525
215 K A -2.5493
216 Q A -2.2592
217 K A -2.3098
218 S A -1.3177
219 V A -0.1914
220 D A -1.8331
221 S A -1.9047
222 E A -2.8045
223 G A -2.9786
224 N A -3.6161
225 R A -4.4693
226 K A -4.3376
227 D A -4.2418
228 D A -3.6111
229 V A -2.0787
230 K A -2.4908
231 T A -2.0476
232 C A -1.3164
233 G A -1.9269
234 K A -2.1144
235 L A 0.0000
236 N A 0.0000
237 F A 0.0000
238 A A 0.0000
239 L A 0.0000
240 Q A -1.8998
241 Y A 0.0000
242 D A -1.3716
243 Y A -0.4655
244 E A -2.2992
245 N A -2.4152
246 E A -2.0080
247 L A -1.1873
248 L A 0.0000
249 V A 0.0000
250 V A 0.0000
251 K A -0.6317
252 I A 0.0000
253 I A -0.2797
254 K A -0.3888
255 A A 0.0000
256 L A -1.1722
257 D A -2.0079
258 L A 0.0000
259 P A -0.7195
260 A A -0.5776
261 K A -0.7649
262 D A -0.1832
263 F A 1.2779
264 T A 0.2010
265 G A -0.3030
266 T A -1.0137
267 S A 0.0000
268 D A 0.0000
269 P A 0.0000
270 Y A 0.0000
271 V A 0.0000
272 K A -1.3124
273 I A 0.0000
274 Y A 0.0000
275 L A 0.0000
276 L A -1.7610
277 P A -1.5518
278 D A -2.5508
279 R A -3.4152
280 K A -3.4284
281 K A -2.9004
282 K A -3.0385
283 F A -1.3494
284 Q A -1.8211
285 T A 0.0000
286 R A -2.4374
287 V A -1.3322
288 H A -1.6248
289 R A -2.7798
290 K A -2.7561
291 T A -1.6700
292 L A -1.2764
293 N A -1.5209
294 P A 0.0000
295 L A 0.4735
296 F A 0.0000
297 D A -1.5302
298 E A -0.8491
299 L A 0.3874
300 F A -0.0342
301 Q A -0.7067
302 F A 0.0000
303 P A -0.8204
304 V A 0.0000
305 V A -0.1556
306 Y A -0.4174
307 D A -1.9335
308 Q A -1.6886
309 L A 0.0000
310 S A -1.8779
311 N A -2.5687
312 R A -2.3048
313 K A -2.0209
314 L A 0.0000
315 H A -0.7844
316 F A 0.0000
317 S A 0.0000
318 I A 0.0000
319 Y A -0.3192
320 D A 0.0000
321 F A -0.7969
322 D A -0.7761
323 R A -0.5982
324 F A 1.1558
325 S A 0.1712
326 R A -0.5833
327 H A -0.9331
328 D A -1.4534
329 M A -0.4557
330 I A 0.0000
331 G A 0.0000
332 E A -0.8547
333 V A 0.0000
334 I A -0.2392
335 L A 0.0000
336 D A -2.5158
337 N A -2.0007
338 L A 0.0000
339 F A -0.7576
340 E A -1.8709
341 V A -0.6903
342 S A 0.0000
343 D A -2.2423
344 L A 0.0000
345 S A -1.9101
346 R A -3.2817
347 E A -3.0926
348 A A -1.7061
349 T A -0.4749
350 V A 0.2202
351 W A -0.1178
352 K A -1.2978
353 D A -2.3745
354 I A 0.0000
355 H A -1.5466
356 C A -0.8797
357 A A -0.5187
358 T A -0.8384
359 T A -1.0736
360 E A -1.9801
361 S A -1.0695
362 I A -0.7012
363 D A -2.1567
364 L A 0.0000
365 G A 0.0000
366 E A -1.2940
367 I A 0.0000
368 M A -0.1379
369 F A 0.0000
370 S A 0.0000
371 L A 0.0000
372 C A 0.0000
373 Y A 0.0000
374 L A -0.9513
375 P A -0.8905
376 T A -0.4288
377 A A -0.4052
378 G A -1.1187
379 R A -1.1138
380 M A 0.0000
381 T A 0.1174
382 L A 0.0000
383 T A -0.1763
384 V A 0.0000
385 I A -0.2646
386 K A -0.7010
387 C A 0.0000
388 R A -2.0106
389 N A -2.5018
390 L A 0.0000
391 K A -1.3258
392 A A 0.0000
393 M A -0.1449
394 D A 0.4011
395 I A 1.5883
396 T A 0.3378
397 G A -0.1545
398 S A -0.6609
399 S A 0.0000
400 D A 0.0000
401 P A 0.0000
402 Y A 0.0000
403 V A 0.0000
404 K A -1.4607
405 V A 0.0000
406 S A 0.0000
407 L A 0.0000
408 M A -1.6094
409 C A -2.2505
410 E A -3.0551
411 G A -2.5947
412 R A -2.9739
413 R A -2.2155
414 L A -1.0063
415 K A -1.8642
416 K A -2.3511
417 R A -2.9182
418 K A -2.6749
419 T A -1.5613
420 T A -0.9054
421 T A -1.1028
422 K A -1.8237
423 K A -2.5969
424 N A -2.3891
425 T A -1.6522
426 L A -1.3601
427 N A -1.9069
428 P A 0.0000
429 V A -0.0297
430 Y A 0.0000
431 N A -1.1681
432 E A -0.8717
433 A A -0.1418
434 I A 0.0000
435 I A 0.8604
436 F A 0.0000
437 D A -1.3562
438 I A 0.0000
439 P A -1.3892
440 P A -1.8523
441 E A -2.6951
442 N A -2.3888
443 V A -1.8789
444 D A -2.8076
445 Q A -2.8879
446 V A 0.0000
447 S A 0.0000
448 L A 0.0000
449 C A -0.4052
450 I A 0.0000
451 A A 0.0000
452 V A 0.0000
453 M A -0.0206
454 D A 0.0000
455 Y A -0.6723
456 D A -0.7183
457 R A -1.1156
458 V A 0.7901
459 G A -0.3606
460 H A -1.1118
461 N A -0.9100
462 E A -0.6803
463 V A -0.0505
464 I A 0.0000
465 G A 0.0000
466 V A 0.0000
467 C A 0.0000
468 R A -1.1007
469 T A 0.0000
470 G A 0.0000
471 L A -2.0511
472 D A -2.9144
473 A A 0.0000
474 E A -2.8775
475 G A -1.7340
476 L A -0.9726
477 G A 0.0000
478 R A -3.1992
479 D A -2.8472
480 H A 0.0000
481 W A 0.0000
482 N A -1.5967
483 E A -1.5231
484 M A 0.0000
485 L A -0.7182
486 A A -0.2476
487 Y A -0.2487
488 H A -1.6247
489 R A -2.7423
490 K A -2.5383
491 P A -1.4782
492 I A 0.0000
493 T A -0.3552
494 H A -0.1491
495 W A 0.0637
496 H A 0.0000
497 P A -0.3084
498 L A 0.0000
499 L A 0.3325
500 E A -0.9292
501 L A 0.0625
502 P A -0.6024
503 G A -1.4520
504 R A -1.8450
505 A A -0.2453
506 T A -0.0821
507 S A -0.1132
508 F A 0.6971
509 D A -1.3828
510 S A -1.3003
511 Q A -1.6456
512 G A -1.4380
513 S A -0.4967
514 C A 0.1364
515 S A -0.3883
516 S A -0.7729
517 P A -1.3105
518 R A -2.2642
519 P A -1.4172
520 P A -1.0071
521 S A -0.7351
522 T A -0.3963
523 P A -0.3762
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.2976 8.1494 View CSV PDB
4.5 -0.3844 8.1509 View CSV PDB
5.0 -0.4882 8.1552 View CSV PDB
5.5 -0.5885 8.1679 View CSV PDB
6.0 -0.6645 8.1998 View CSV PDB
6.5 -0.7032 8.2621 View CSV PDB
7.0 -0.7064 8.3526 View CSV PDB
7.5 -0.6865 8.4588 View CSV PDB
8.0 -0.6533 8.5712 View CSV PDB
8.5 -0.6093 8.6855 View CSV PDB
9.0 -0.5532 8.7998 View CSV PDB