Project name: eb69e88d76e4f9

Status: done

Started: 2026-10-21 13:08:35
Settings
Chain sequence(s) MRPKDQVQSSAGDGTGSGDPATGTPTTQPAADPAPEPSAEPKPAPAQGTGSGQKSGSRTKTGGSFCRSRIRGDSDAPWTRYIFQGPYGPRATGLGTGRAEGIWKTPAAYIGRRPGVSGPERAAFIRELQEALCPNPLPRKKITEDDIKVMLYLLEEKERDLNTAARIGQSLVKQNSVLMEENNKLETMLGSAREEILHLRKQVNLRDDLLQLYSDSDDDEEDEEDEEEEEGEEEEREGQRDQDQQHDHPYGAPKPPPKAETLHHCPQLEALKQKLKLLEEENDHLREEASHLDNLEDKEQMLILECVEQFSEASQQMAELSEVLVLRLEGYERQQKEITQLQAEITKLQQRCQSYGAQTEKLQQQLASEKGVHPESLRAGSHMQDYGSRPRERQEDGKSHRQRSSMPAGSVTHYGYSVPLDALPSFPETLAEELRTSLRKFITDPAYFMERCDTRCREERKKEQGTMPPPPVQDLKPPEDFEAPEELVPEEELGAIEEVGTAEDGPAEETEQASEETEAWEEVEPEVDEATRMNVVVSALEASGLGPSHLDMKYVLQQLSNWQDAHSKRQQKQKVVPKDSPAPQQQTNMGGGIVEQQPIVPTQDSQRLEEDRATHSPSAREEEGPSGAT input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:05)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:15:24)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/eb69e88d76e4f9/tmp/folded.pdb                 (00:15:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:18:41)
Show buried residues

Minimal score value
-6.4771
Maximal score value
2.7625
Average score
-1.5236
Total score value
-958.3451

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.0548
2 R A -1.8531
3 P A -2.2396
4 K A -3.2985
5 D A -2.9544
6 Q A -2.0290
7 V A 0.1823
8 Q A -0.7371
9 S A -0.4644
10 S A -0.6218
11 A A -0.7289
12 G A -1.5315
13 D A -2.2898
14 G A -1.6724
15 T A -1.0108
16 G A -0.7989
17 S A -1.1126
18 G A -1.5806
19 D A -2.1872
20 P A -1.3464
21 A A -0.6384
22 T A -0.3320
23 G A -0.5777
24 T A -0.4621
25 P A -0.4425
26 T A -0.4925
27 T A -0.7785
28 Q A -1.3603
29 P A -0.8256
30 A A -0.6557
31 A A -0.9388
32 D A -1.8579
33 P A -1.1162
34 A A -0.9118
35 P A -1.2003
36 E A -2.1085
37 P A -1.3766
38 S A -1.0335
39 A A -1.0330
40 E A -2.3559
41 P A -2.0402
42 K A -2.3489
43 P A -1.1424
44 A A -0.5344
45 P A -0.4888
46 A A -0.7465
47 Q A -1.4985
48 G A -1.2661
49 T A -0.8578
50 G A -0.8128
51 S A -0.9777
52 G A -1.6174
53 Q A -2.4405
54 K A -2.6554
55 S A -1.5711
56 G A -1.4719
57 S A -1.4315
58 R A -2.4672
59 T A -2.0024
60 K A -2.2856
61 T A -1.3648
62 G A -1.1382
63 G A -0.3204
64 S A 0.5574
65 F A 1.7041
66 C A 0.4274
67 R A -1.3492
68 S A -1.5878
69 R A -1.8751
70 I A -0.3576
71 R A -2.0676
72 G A -2.1592
73 D A -2.7035
74 S A -2.2734
75 D A -2.2540
76 A A -0.6855
77 P A -0.3787
78 W A 0.5881
79 T A 0.1687
80 R A -0.2963
81 Y A 1.8040
82 I A 2.7625
83 F A 2.2928
84 Q A 0.3015
85 G A -0.0833
86 P A -0.0958
87 Y A 0.4685
88 G A -0.5195
89 P A -1.1293
90 R A -1.9725
91 A A -0.9547
92 T A -0.5005
93 G A -0.0726
94 L A 1.0184
95 G A -0.2129
96 T A -0.5666
97 G A -1.5154
98 R A -2.5558
99 A A -1.9454
100 E A -1.9682
101 G A -0.2799
102 I A 1.5701
103 W A 0.9367
104 K A -0.6208
105 T A -0.2513
106 P A 0.1600
107 A A 0.5234
108 A A 0.4038
109 Y A 1.1852
110 I A 1.7787
111 G A -0.3754
112 R A -2.2529
113 R A -2.7054
114 P A -1.9207
115 G A -1.4669
116 V A -1.7660
117 S A -1.4280
118 G A -1.5456
119 P A -1.5333
120 E A -2.5982
121 R A -2.7084
122 A A -1.5174
123 A A -1.8031
124 F A -1.4427
125 I A -0.7674
126 R A -2.9443
127 E A -2.8091
128 L A -1.0798
129 Q A -2.1423
130 E A -2.8836
131 A A -1.0812
132 L A 0.1028
133 C A -0.4853
134 P A -0.8917
135 N A -1.1043
136 P A -0.5596
137 L A 0.1736
138 P A -1.3842
139 R A -2.6340
140 K A -2.7329
141 K A -2.4183
142 I A -0.3030
143 T A -1.4056
144 E A -2.4888
145 D A -2.2989
146 D A -1.0210
147 I A 0.2093
148 K A -0.4958
149 V A 1.7543
150 M A 2.0198
151 L A 2.1303
152 Y A 2.1267
153 L A 1.7085
154 L A 0.6107
155 E A -1.6905
156 E A -2.5621
157 K A -3.1949
158 E A -3.9643
159 R A -4.3781
160 D A -3.9902
161 L A -2.0741
162 N A -2.4315
163 T A -1.8816
164 A A -0.9155
165 A A -0.8977
166 R A -1.2727
167 I A 0.9022
168 G A 0.0912
169 Q A -0.9061
170 S A -0.3000
171 L A 1.0735
172 V A 0.8210
173 K A -0.7690
174 Q A -0.7195
175 N A -0.6497
176 S A -0.2189
177 V A 0.4637
178 L A -0.2594
179 M A -0.8236
180 E A -2.5989
181 E A -2.6731
182 N A -2.5226
183 N A -3.1545
184 K A -3.1713
185 L A -1.6704
186 E A -2.5757
187 T A -1.5350
188 M A -0.4477
189 L A -0.5131
190 G A -1.5351
191 S A -1.4881
192 A A -1.6118
193 R A -2.5519
194 E A -3.2253
195 E A -3.0788
196 I A -1.5987
197 L A -1.7256
198 H A -2.6404
199 L A -1.3894
200 R A -2.5467
201 K A -2.9877
202 Q A -2.2543
203 V A -1.2589
204 N A -2.6990
205 L A -1.4783
206 R A -2.6267
207 D A -2.8572
208 D A -2.2558
209 L A -0.4937
210 L A -0.4087
211 Q A -1.2106
212 L A 0.2874
213 Y A 0.2527
214 S A -1.4477
215 D A -2.4744
216 S A -2.5100
217 D A -4.4190
218 D A -5.6418
219 D A -5.6596
220 E A -5.6734
221 E A -6.2462
222 D A -6.4771
223 E A -6.0324
224 E A -5.9365
225 D A -6.1961
226 E A -6.0864
227 E A -5.7349
228 E A -5.7842
229 E A -5.7638
230 E A -5.3944
231 G A -4.7175
232 E A -5.4513
233 E A -5.7543
234 E A -5.4797
235 E A -5.1852
236 R A -5.2276
237 E A -4.6797
238 G A -3.7142
239 Q A -3.6210
240 R A -4.0993
241 D A -4.1145
242 Q A -3.9321
243 D A -3.8241
244 Q A -3.5260
245 Q A -3.3282
246 H A -2.9049
247 D A -3.2126
248 H A -2.0575
249 P A -0.5644
250 Y A 0.7969
251 G A 0.0893
252 A A -0.4078
253 P A -1.1790
254 K A -1.9883
255 P A -1.2978
256 P A -1.2208
257 P A -1.2400
258 K A -2.2113
259 A A -1.6868
260 E A -1.9784
261 T A -0.7981
262 L A 0.3799
263 H A -0.9026
264 H A -1.1132
265 C A -0.5772
266 P A -0.9597
267 Q A -1.0303
268 L A -0.2617
269 E A -1.1969
270 A A -1.0428
271 L A -0.2984
272 K A -1.8214
273 Q A -2.1415
274 K A -1.6815
275 L A -0.9619
276 K A -2.5091
277 L A -1.5939
278 L A -2.1440
279 E A -3.6845
280 E A -4.2053
281 E A -3.8301
282 N A -4.0155
283 D A -4.7557
284 H A -4.1042
285 L A -2.7627
286 R A -4.0433
287 E A -4.2396
288 E A -3.2863
289 A A -2.3043
290 S A -2.5305
291 H A -2.6898
292 L A -2.1233
293 D A -3.8474
294 N A -3.7105
295 L A -2.8921
296 E A -4.3173
297 D A -4.2513
298 K A -3.5057
299 E A -3.3706
300 Q A -1.9681
301 M A -0.1840
302 L A 0.3410
303 I A 0.8469
304 L A 0.9579
305 E A -0.6168
306 C A 0.6709
307 V A 1.3618
308 E A -1.5200
309 Q A -1.5939
310 F A 0.3374
311 S A -1.2482
312 E A -2.5261
313 A A -1.3628
314 S A -1.3428
315 Q A -2.2993
316 Q A -1.8393
317 M A -0.5848
318 A A -1.3026
319 E A -1.9710
320 L A 0.1958
321 S A -0.1712
322 E A -0.5188
323 V A 0.9983
324 L A 1.3223
325 V A 2.1756
326 L A 1.6116
327 R A -0.0550
328 L A 0.8547
329 E A -1.0318
330 G A -1.1561
331 Y A -1.2556
332 E A -3.5576
333 R A -4.3561
334 Q A -3.5502
335 Q A -3.6803
336 K A -4.2780
337 E A -3.6158
338 I A -1.5954
339 T A -1.8471
340 Q A -2.0976
341 L A -0.6278
342 Q A -1.0440
343 A A -1.1182
344 E A -1.2161
345 I A 0.0682
346 T A -1.3330
347 K A -2.5744
348 L A -1.5306
349 Q A -2.1751
350 Q A -2.9683
351 R A -2.5842
352 C A -1.3410
353 Q A -2.1255
354 S A -1.4024
355 Y A -0.5187
356 G A -1.1507
357 A A -1.5836
358 Q A -1.6800
359 T A -1.8385
360 E A -3.1412
361 K A -2.9997
362 L A -1.2086
363 Q A -2.5658
364 Q A -3.1426
365 Q A -2.5617
366 L A -1.4439
367 A A -1.6430
368 S A -1.8296
369 E A -2.7046
370 K A -2.6198
371 G A -1.6106
372 V A -0.4096
373 H A -1.7835
374 P A -1.6101
375 E A -2.2189
376 S A -1.1171
377 L A -0.3867
378 R A -2.1738
379 A A -1.1772
380 G A -0.8604
381 S A -1.2367
382 H A -1.5494
383 M A -0.4145
384 Q A -1.6226
385 D A -1.8040
386 Y A -0.1976
387 G A -0.9980
388 S A -1.3941
389 R A -2.3953
390 P A -2.4435
391 R A -3.6172
392 E A -3.8907
393 R A -4.0976
394 Q A -3.7116
395 E A -3.7440
396 D A -3.5489
397 G A -2.5659
398 K A -2.6434
399 S A -2.0044
400 H A -2.6778
401 R A -3.4101
402 Q A -3.3196
403 R A -3.0318
404 S A -1.2738
405 S A -0.4315
406 M A 0.7448
407 P A 0.1153
408 A A 0.1280
409 G A -0.1010
410 S A 0.3124
411 V A 1.4402
412 T A 0.4850
413 H A 0.0683
414 Y A 1.0497
415 G A 0.7662
416 Y A 1.5605
417 S A 1.3509
418 V A 2.0813
419 P A 0.9867
420 L A 1.3381
421 D A -0.5808
422 A A 0.3792
423 L A 0.7654
424 P A -0.2105
425 S A -0.4837
426 F A 0.2137
427 P A -0.9713
428 E A -2.1178
429 T A -1.5980
430 L A -0.9587
431 A A -1.6826
432 E A -2.8789
433 E A -2.5472
434 L A -0.7132
435 R A -2.0043
436 T A -1.5896
437 S A -0.5949
438 L A 0.4280
439 R A -1.1975
440 K A -0.6050
441 F A 1.3289
442 I A 1.6992
443 T A 0.2543
444 D A 0.1566
445 P A 0.5603
446 A A 0.2174
447 Y A -0.0588
448 F A -0.0551
449 M A -0.6579
450 E A -2.6114
451 R A -2.9506
452 C A -2.0575
453 D A -3.6337
454 T A -3.7597
455 R A -4.3953
456 C A -3.5531
457 R A -5.1146
458 E A -5.4885
459 E A -5.1192
460 R A -5.6058
461 K A -5.8718
462 K A -5.3782
463 E A -4.7239
464 Q A -3.7034
465 G A -2.6955
466 T A -1.1135
467 M A 0.1848
468 P A -0.0352
469 P A -0.0466
470 P A -0.1278
471 P A -0.1465
472 V A 0.6500
473 Q A -1.0951
474 D A -1.5954
475 L A -0.2981
476 K A -1.8786
477 P A -1.6961
478 P A -1.8015
479 E A -2.6388
480 D A -2.1646
481 F A -0.2521
482 E A -1.3307
483 A A -1.1582
484 P A -1.8958
485 E A -2.4864
486 E A -1.6814
487 L A 0.8719
488 V A 1.4267
489 P A -0.5734
490 E A -2.6799
491 E A -3.1542
492 E A -2.5277
493 L A 0.0012
494 G A 0.2152
495 A A 0.5203
496 I A 0.6389
497 E A -1.3769
498 E A -1.4980
499 V A 0.2318
500 G A -0.2392
501 T A -0.2676
502 A A -1.4070
503 E A -2.7572
504 D A -2.9271
505 G A -1.8075
506 P A -1.4340
507 A A -1.6064
508 E A -2.9556
509 E A -3.4428
510 T A -2.5981
511 E A -3.2155
512 Q A -2.5545
513 A A -1.8026
514 S A -2.1105
515 E A -3.1287
516 E A -3.1955
517 T A -2.1594
518 E A -2.3303
519 A A -0.9794
520 W A -0.4436
521 E A -2.0043
522 E A -2.0003
523 V A -0.7491
524 E A -2.0612
525 P A -1.4971
526 E A -2.1078
527 V A -1.2715
528 D A -2.8930
529 E A -2.9910
530 A A -1.4036
531 T A -1.2839
532 R A -1.4830
533 M A -0.1725
534 N A -0.2257
535 V A 1.5320
536 V A 2.2658
537 V A 1.2942
538 S A 0.6680
539 A A 0.9722
540 L A 0.7206
541 E A -0.8096
542 A A -0.3601
543 S A -0.2425
544 G A -0.2934
545 L A 0.7989
546 G A -0.0576
547 P A -0.2654
548 S A -0.2945
549 H A -0.4963
550 L A 0.5889
551 D A -0.8955
552 M A 0.2755
553 K A -0.7347
554 Y A 0.6430
555 V A 0.8998
556 L A 0.7529
557 Q A -0.6632
558 Q A -0.1011
559 L A 0.5447
560 S A -0.6785
561 N A -1.3023
562 W A -0.5759
563 Q A -2.3746
564 D A -3.1612
565 A A -2.6761
566 H A -3.5905
567 S A -3.8731
568 K A -4.9517
569 R A -5.4615
570 Q A -4.7639
571 Q A -4.2106
572 K A -4.0202
573 Q A -3.4539
574 K A -2.7987
575 V A -0.2805
576 V A 0.2340
577 P A -0.8108
578 K A -2.1486
579 D A -2.5929
580 S A -1.4559
581 P A -1.1002
582 A A -0.6440
583 P A -1.1897
584 Q A -2.1869
585 Q A -2.5800
586 Q A -2.3174
587 T A -1.3276
588 N A -1.4325
589 M A -0.0402
590 G A -0.6111
591 G A -0.3811
592 G A 0.4083
593 I A 2.1303
594 V A 1.5072
595 E A -1.3787
596 Q A -2.3302
597 Q A -1.8561
598 P A 0.2570
599 I A 2.4363
600 V A 2.5429
601 P A 0.7053
602 T A -0.7861
603 Q A -2.3644
604 D A -2.9812
605 S A -2.1827
606 Q A -2.6275
607 R A -2.6591
608 L A -1.3386
609 E A -3.1418
610 E A -3.8721
611 D A -3.8479
612 R A -3.4847
613 A A -1.8422
614 T A -1.2776
615 H A -1.4047
616 S A -0.8847
617 P A -0.8811
618 S A -0.7399
619 A A -1.4195
620 R A -3.1603
621 E A -3.9919
622 E A -4.1112
623 E A -3.3801
624 G A -1.8985
625 P A -1.1037
626 S A -0.8375
627 G A -0.6072
628 A A -0.3118
629 T A -0.1677
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.7641 5.2875 View CSV PDB
4.5 -0.9389 5.2875 View CSV PDB
5.0 -1.1697 5.2875 View CSV PDB
5.5 -1.4145 5.2875 View CSV PDB
6.0 -1.631 5.2875 View CSV PDB
6.5 -1.7871 5.2875 View CSV PDB
7.0 -1.8722 5.2875 View CSV PDB
7.5 -1.9031 5.2875 View CSV PDB
8.0 -1.9047 5.2874 View CSV PDB
8.5 -1.8891 5.2871 View CSV PDB
9.0 -1.8567 5.2863 View CSV PDB