Project name: f3efc10d9d148e

Status: done

Started: 2026-11-11 09:11:13
Settings
Chain sequence(s) MSNNGVDIQDKPPAPPMRNTSTMIGAGSKDTGTLNHGSKPLPPNPEEKKKKDRFYRSILPGDKTNKKREKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSKKYMSFTDKSAEDYNSSNTLNVKTVSETPAVPPVSEDDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPVTPTRDVATSPISPTENNTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTPFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLQCCLEMDVEKRGSAKELLQHQFLKIAKPLSSLTPLMHAAKEATKNNH input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:15:53)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/f3efc10d9d148e/tmp/folded.pdb                 (00:15:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:25:22)
Show buried residues

Minimal score value
-4.5852
Maximal score value
2.2898
Average score
-0.9637
Total score value
-525.2322

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6914
2 S A -0.5696
3 N A -1.8880
4 N A -1.7718
5 G A -0.8769
6 V A 0.7653
7 D A -0.3949
8 I A 0.5223
9 Q A -1.7516
10 D A -3.0537
11 K A -3.0314
12 P A -1.6039
13 P A -1.0421
14 A A -0.3575
15 P A -0.4280
16 P A -0.5680
17 M A -0.4183
18 R A -2.0967
19 N A -1.9790
20 T A -1.0162
21 S A -0.3728
22 T A 0.6281
23 M A 1.9589
24 I A 2.2898
25 G A 0.6492
26 A A -0.0894
27 G A -0.8232
28 S A -1.8319
29 K A -2.8070
30 D A -2.8281
31 T A -1.5488
32 G A -0.6424
33 T A -0.1041
34 L A 0.5685
35 N A -1.1861
36 H A -1.6297
37 G A -1.6697
38 S A -1.5461
39 K A -1.7216
40 P A -0.5609
41 L A 0.9014
42 P A 0.0579
43 P A -0.7316
44 N A -1.9955
45 P A -2.2278
46 E A -3.4339
47 E A -3.9242
48 K A -4.1254
49 K A -4.0901
50 K A -4.1150
51 K A -4.2902
52 D A -3.6221
53 R A -1.7637
54 F A 0.8259
55 Y A 0.8411
56 R A -0.4617
57 S A 0.2938
58 I A 2.2085
59 L A 2.2234
60 P A 0.4530
61 G A -1.4562
62 D A -2.9184
63 K A -3.1326
64 T A -2.2223
65 N A -2.8503
66 K A -3.7381
67 K A -4.0448
68 R A -4.2641
69 E A -4.5852
70 K A -4.3464
71 E A -4.2937
72 R A -3.7029
73 P A -2.1567
74 E A -1.5500
75 I A 1.0585
76 S A 0.9617
77 L A 1.5402
78 P A 0.6068
79 S A -0.5131
80 D A -1.4711
81 F A -0.1441
82 E A -1.6400
83 H A -1.0611
84 T A -0.1829
85 I A 0.7701
86 H A -0.3123
87 V A 0.0553
88 G A -0.5151
89 F A -0.5096
90 D A -0.5090
91 A A -0.0511
92 V A 1.2134
93 T A -0.0096
94 G A 0.0000
95 E A -2.0847
96 F A -0.8993
97 T A -0.7777
98 G A -0.6020
99 M A -0.5878
100 P A -1.1795
101 E A -2.7149
102 Q A -2.3037
103 W A 0.0000
104 A A -2.0040
105 R A -2.9526
106 L A -1.7401
107 L A 0.0000
108 Q A -2.2849
109 T A -1.5007
110 S A 0.0000
111 N A -2.0225
112 I A 0.0000
113 T A -1.9582
114 K A -3.1196
115 S A -2.1597
116 E A -2.3083
117 Q A -2.5604
118 K A -3.0414
119 K A -3.0175
120 N A -1.9348
121 P A -1.9699
122 Q A -1.5448
123 A A -1.0017
124 V A 0.0000
125 L A -0.4034
126 D A 0.0000
127 V A 0.0000
128 L A 0.0000
129 E A -1.1768
130 F A 0.0000
131 Y A -0.6649
132 N A -1.2956
133 S A -0.9386
134 K A 0.0000
135 K A -2.2298
136 T A -1.0962
137 S A -1.1627
138 N A -1.3867
139 S A -1.5763
140 K A -1.5586
141 K A -0.6149
142 Y A 0.9503
143 M A 1.2201
144 S A 1.2242
145 F A 1.5715
146 T A -0.2190
147 D A -2.3010
148 K A -2.7567
149 S A -1.8928
150 A A -1.8131
151 E A -2.6235
152 D A -2.3166
153 Y A -0.6315
154 N A -1.1608
155 S A -0.9557
156 S A -1.1136
157 N A -1.1400
158 T A -0.2887
159 L A 0.9802
160 N A 0.0486
161 V A 0.6959
162 K A -0.7304
163 T A 0.1849
164 V A 0.8575
165 S A -0.4146
166 E A -1.6590
167 T A -1.1026
168 P A -0.2498
169 A A 0.6854
170 V A 1.5757
171 P A 0.8373
172 P A 0.7549
173 V A 1.0976
174 S A -0.5900
175 E A -2.9111
176 D A -4.0789
177 D A -4.4456
178 E A -4.4122
179 D A -4.5140
180 D A -4.5099
181 D A -4.3504
182 D A -4.1260
183 D A -3.3086
184 A A -1.6566
185 T A -1.0050
186 P A -0.4120
187 P A 0.0124
188 P A 0.6068
189 V A 1.8994
190 I A 1.5261
191 A A 0.7594
192 P A -0.1985
193 R A -1.2732
194 P A -1.7900
195 E A -2.9565
196 H A -2.5092
197 T A -2.0502
198 K A -2.5987
199 S A 0.0000
200 V A 0.3728
201 Y A 1.0302
202 T A -0.5025
203 R A -0.8174
204 S A 0.5698
205 V A 1.7556
206 I A 1.7013
207 E A -0.2319
208 P A 0.0004
209 L A 1.2784
210 P A 1.2543
211 V A 1.8676
212 T A 0.5740
213 P A -0.2963
214 T A -1.3905
215 R A -2.4823
216 D A -1.8441
217 V A 0.5001
218 A A 0.4696
219 T A 0.1427
220 S A -0.0011
221 P A 0.5346
222 I A 1.7088
223 S A 0.5418
224 P A -0.3526
225 T A -1.3161
226 E A -2.7461
227 N A -2.7833
228 N A -2.2770
229 T A -1.0082
230 T A -0.5436
231 P A -0.8022
232 P A -1.2443
233 D A -1.5865
234 A A -0.1663
235 L A 0.6844
236 T A -0.6713
237 R A -2.1390
238 N A -2.8724
239 T A -2.5482
240 E A -3.5372
241 K A -4.0482
242 Q A -4.0538
243 K A -4.3205
244 K A -4.2335
245 K A -3.6544
246 P A -2.5521
247 K A -3.0392
248 M A -2.4462
249 S A -2.8504
250 D A -4.1363
251 E A -4.1070
252 E A -4.4319
253 I A 0.0000
254 L A -3.2596
255 E A -3.9471
256 K A -3.0563
257 L A 0.0000
258 R A -1.7031
259 S A -1.1139
260 I A -0.2658
261 V A 0.2273
262 S A 0.5049
263 V A 1.3375
264 G A -0.4303
265 D A -1.6794
266 P A 0.0000
267 K A -2.7963
268 K A -2.7406
269 K A -1.5014
270 Y A 0.0000
271 T A -0.7080
272 P A -0.3834
273 F A -0.7148
274 E A -1.9439
275 K A -1.9112
276 I A -0.1545
277 G A -0.7909
278 Q A -1.0757
279 G A -0.5911
280 A A -0.5539
281 S A -0.8636
282 G A -0.9153
283 T A -0.7840
284 V A -0.4378
285 Y A -0.6036
286 T A 0.0000
287 A A 0.0000
288 M A -0.3251
289 D A 0.0000
290 V A 0.9463
291 A A 0.5465
292 T A -0.2422
293 G A -0.6193
294 Q A -1.3519
295 E A -1.3983
296 V A 0.0000
297 A A 0.0000
298 I A 0.0000
299 K A -0.5447
300 Q A -0.4066
301 M A 0.0000
302 N A -1.9594
303 L A 0.0000
304 Q A -2.7496
305 Q A -2.6166
306 Q A -2.0209
307 P A -1.7077
308 K A -2.0385
309 K A -1.9664
310 E A -2.2396
311 L A -0.8534
312 I A 0.0000
313 I A 0.0000
314 N A -1.2052
315 E A 0.0000
316 I A 0.0000
317 L A -0.8740
318 V A 0.0000
319 M A 0.0000
320 R A -2.6298
321 E A -2.9562
322 N A 0.0000
323 K A -2.7969
324 N A -1.5317
325 P A -0.9370
326 N A 0.0000
327 I A 0.0000
328 V A 0.0000
329 N A -1.1320
330 Y A 0.0000
331 L A 0.2607
332 D A -0.0890
333 S A 0.0000
334 Y A 0.0000
335 L A -0.1462
336 V A -0.4843
337 G A -1.0198
338 D A -2.1399
339 E A -1.5906
340 L A 0.0000
341 W A 0.0000
342 V A 0.0000
343 V A 0.0000
344 M A 0.0000
345 E A -0.4245
346 Y A -0.0978
347 L A 0.0000
348 A A -0.1244
349 G A 0.0000
350 G A -0.1746
351 S A -0.5275
352 L A 0.0000
353 T A -0.8674
354 D A -1.1478
355 V A 0.0000
356 V A 0.0000
357 T A -0.8752
358 E A -1.5142
359 T A 0.0000
360 C A -0.0622
361 M A -0.2935
362 D A -1.2480
363 E A -0.6298
364 G A 0.0000
365 Q A 0.0000
366 I A 0.0000
367 A A 0.0000
368 A A 0.0000
369 V A 0.0000
370 C A 0.0000
371 R A -0.8307
372 E A 0.0000
373 C A 0.0000
374 L A 0.0000
375 Q A -1.0605
376 A A 0.0000
377 L A 0.0000
378 E A -1.4966
379 F A -0.8629
380 L A 0.0000
381 H A -1.1017
382 S A -0.9823
383 N A -1.3489
384 Q A -1.2062
385 V A 0.0000
386 I A 0.0000
387 H A 0.0000
388 R A -0.2281
389 D A 0.0000
390 I A 0.0000
391 K A -0.5322
392 S A 0.0000
393 D A -1.2404
394 N A 0.0000
395 I A 0.0000
396 L A -0.0396
397 L A 0.0000
398 G A 0.0000
399 M A -0.6586
400 D A -1.6367
401 G A 0.0000
402 S A -0.5331
403 V A 0.0000
404 K A -0.3356
405 L A 0.0000
406 T A -0.3563
407 D A -0.4785
408 F A 0.0000
409 G A -0.3595
410 F A 0.0000
411 C A 0.0000
412 A A -0.8025
413 Q A -1.4870
414 I A 0.0000
415 T A -1.7421
416 P A -1.7586
417 E A -2.7117
418 Q A -2.7456
419 S A -2.1144
420 K A -2.3835
421 R A -1.7777
422 S A -1.2630
423 T A -0.6327
424 M A -0.3655
425 V A 0.1513
426 G A 0.0000
427 T A 0.0891
428 P A 0.0000
429 Y A 0.0000
430 W A 0.0000
431 M A 0.0000
432 A A 0.0000
433 P A 0.0000
434 E A 0.0000
435 V A 0.0000
436 V A 0.0000
437 T A -0.9936
438 R A -1.6934
439 K A -2.2638
440 A A -1.5485
441 Y A 0.0000
442 G A -1.0777
443 P A -0.7236
444 K A -0.7183
445 V A 0.0000
446 D A 0.0000
447 I A 0.0000
448 W A 0.0000
449 S A 0.0000
450 L A 0.0000
451 G A 0.0000
452 I A 0.0000
453 M A 0.0000
454 A A 0.0000
455 I A 0.0000
456 E A 0.0000
457 M A 0.0000
458 I A -0.4049
459 E A -0.8468
460 G A 0.0000
461 E A -0.5356
462 P A 0.0000
463 P A -0.5827
464 Y A -0.4668
465 L A -0.5780
466 N A -1.2513
467 E A -1.6023
468 N A -1.4525
469 P A -0.6239
470 L A 0.0000
471 R A -0.9646
472 A A 0.0000
473 L A 0.0000
474 Y A 0.0000
475 L A -0.2570
476 I A 0.0000
477 A A -0.4339
478 T A -0.7886
479 N A -1.3161
480 G A -0.7232
481 T A -0.8839
482 P A -1.3628
483 E A -2.3279
484 L A -1.9172
485 Q A -2.6548
486 N A -3.0233
487 P A -2.6745
488 E A -3.2377
489 K A -3.0618
490 L A -1.6936
491 S A -0.9374
492 A A -0.7694
493 I A -0.4681
494 F A 0.0000
495 R A -1.9977
496 D A -2.4040
497 F A 0.0000
498 L A 0.0000
499 Q A -1.8985
500 C A -1.5393
501 C A 0.0000
502 L A 0.0000
503 E A -1.2808
504 M A -0.6219
505 D A -1.6260
506 V A -1.4897
507 E A -2.7487
508 K A -2.7332
509 R A 0.0000
510 G A 0.0000
511 S A -1.7384
512 A A 0.0000
513 K A -2.9853
514 E A -2.9880
515 L A 0.0000
516 L A -2.0681
517 Q A -2.5846
518 H A -2.2268
519 Q A -1.8839
520 F A 0.0000
521 L A 0.0000
522 K A -1.8484
523 I A -0.1204
524 A A -0.7428
525 K A -0.8550
526 P A -0.3752
527 L A -0.4516
528 S A -0.7840
529 S A -0.6305
530 L A 0.0000
531 T A -0.6576
532 P A -0.2034
533 L A 0.0000
534 M A 0.0000
535 H A -1.4846
536 A A -1.4979
537 A A 0.0000
538 K A -2.7046
539 E A -3.4881
540 A A -2.8835
541 T A -2.8782
542 K A -3.8201
543 N A -3.5808
544 N A -3.2131
545 H A -2.7564
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.6621 4.3514 View CSV PDB
4.5 -0.7432 4.3514 View CSV PDB
5.0 -0.8432 4.3514 View CSV PDB
5.5 -0.9402 4.3514 View CSV PDB
6.0 -1.0114 4.3514 View CSV PDB
6.5 -1.0424 4.3514 View CSV PDB
7.0 -1.0341 4.3514 View CSV PDB
7.5 -0.9994 4.3514 View CSV PDB
8.0 -0.9504 4.3514 View CSV PDB
8.5 -0.8916 4.3514 View CSV PDB
9.0 -0.8239 4.3514 View CSV PDB