Project name: ffefb50e7c9a62

Status: done

Started: 2026-11-11 09:08:28
Settings
Chain sequence(s) MGCVCSSNPEDDWMENIDVCENCHYPIVPLDSKSTLPIRTGSEVRDPLVTYEGSLPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHDLVRHYTNASDGLCTKLSRPCQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLNVNKLLDMAAQIAEGMAFIEEQNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLEKGYRMVRPDNCPEELYHLMMLCWKERPEDRPTFDYLRSVLDDFFTATEGQYQPQP input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:11:01)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/ffefb50e7c9a62/tmp/folded.pdb                 (00:11:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:19:25)
Show buried residues

Minimal score value
-3.8429
Maximal score value
2.4178
Average score
-0.8585
Total score value
-436.9894

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9557
2 G A 0.8624
3 C A 1.7907
4 V A 2.3372
5 C A 1.6223
6 S A 0.1590
7 S A -1.0275
8 N A -2.1771
9 P A -2.4077
10 E A -3.4263
11 D A -3.2643
12 D A -2.5469
13 W A -0.4232
14 M A -0.0358
15 E A -1.7863
16 N A -1.6384
17 I A 0.1018
18 D A -1.0053
19 V A 0.1825
20 C A -0.4575
21 E A -2.2329
22 N A -1.6801
23 C A -0.2731
24 H A -0.6542
25 Y A 1.1702
26 P A 1.2307
27 I A 2.1084
28 V A 2.4178
29 P A 0.9304
30 L A 0.8901
31 D A -1.3554
32 S A -1.6513
33 K A -2.1248
34 S A -0.8295
35 T A 0.1204
36 L A 1.6201
37 P A 1.1895
38 I A 1.3075
39 R A -0.9163
40 T A -0.7571
41 G A -1.2643
42 S A -0.9269
43 E A -1.5814
44 V A -0.4778
45 R A -2.4315
46 D A -1.9307
47 P A -0.1708
48 L A 2.0356
49 V A 2.3577
50 T A 1.2609
51 Y A 0.8886
52 E A -1.0948
53 G A -0.6493
54 S A -0.0988
55 L A 0.9205
56 P A 0.2467
57 P A -0.0435
58 A A -0.1930
59 S A -0.2920
60 P A -0.4004
61 L A 0.3384
62 Q A -1.4494
63 D A -2.3889
64 N A -1.6508
65 L A -1.1147
66 V A 0.0000
67 I A -0.9594
68 A A 0.0000
69 L A -1.0873
70 H A -1.7746
71 S A -2.2021
72 Y A 0.0000
73 E A -2.3845
74 P A -1.6350
75 S A -1.3653
76 H A -1.5673
77 D A -2.1806
78 G A -1.7289
79 D A -1.4421
80 L A 0.0000
81 G A -1.6228
82 F A 0.0000
83 E A -3.1669
84 K A -2.8057
85 G A -1.6288
86 E A -1.3747
87 Q A -1.0269
88 L A 0.0000
89 R A -1.4090
90 I A 0.0000
91 L A -1.2624
92 E A -2.4810
93 Q A -2.1067
94 S A -1.6160
95 G A -1.3246
96 E A -0.9160
97 W A 0.0000
98 W A -0.8530
99 K A -1.5568
100 A A 0.0000
101 Q A -1.7101
102 S A 0.0000
103 L A 0.3721
104 T A -0.1344
105 T A -0.6088
106 G A -1.2136
107 Q A -2.2242
108 E A -2.6306
109 G A -1.5117
110 F A -0.6276
111 I A 0.0000
112 P A 0.0000
113 F A 0.0814
114 N A -0.5779
115 F A 0.0000
116 V A 0.0000
117 A A 0.0000
118 K A -1.7754
119 A A -1.5058
120 N A -1.8377
121 S A -1.1102
122 L A -0.7531
123 E A -1.0363
124 P A -0.6040
125 E A -0.6332
126 P A -0.6954
127 W A 0.0000
128 F A 0.0000
129 F A -1.0902
130 K A -2.2316
131 N A -2.4042
132 L A -1.5201
133 S A -1.4039
134 R A -1.3934
135 K A -1.1458
136 D A -0.9695
137 A A 0.0000
138 E A -0.6096
139 R A -0.7282
140 Q A -0.8973
141 L A 0.0000
142 L A -0.0547
143 A A -0.4363
144 P A -0.7023
145 G A -0.7297
146 N A 0.0000
147 T A -0.7403
148 H A -0.9358
149 G A 0.0000
150 S A 0.0000
151 F A 0.0000
152 L A 0.0000
153 I A 0.0000
154 R A 0.0000
155 E A -2.0070
156 S A 0.0000
157 E A -2.3489
158 S A -1.2753
159 T A -1.0639
160 A A -0.7358
161 G A -1.0935
162 S A 0.0000
163 F A -1.0187
164 S A 0.0000
165 L A 0.0000
166 S A 0.0000
167 V A 0.0000
168 R A 0.0000
169 D A -0.0349
170 F A 0.2488
171 D A -1.3041
172 Q A -2.1390
173 N A -2.5163
174 Q A -2.2741
175 G A -1.5040
176 E A -1.0415
177 V A -0.3959
178 V A -0.1261
179 K A -0.4074
180 H A 0.0000
181 Y A 0.0000
182 K A -1.3617
183 I A 0.0000
184 R A -1.9410
185 N A -2.0235
186 L A -1.7529
187 D A -2.6834
188 N A -2.3670
189 G A -1.7270
190 G A -1.2620
191 F A -0.9274
192 Y A -0.7005
193 I A 0.0000
194 S A 0.0000
195 P A -1.3363
196 R A -2.0439
197 I A -0.7486
198 T A -0.6633
199 F A 0.0000
200 P A -0.8284
201 G A -0.7882
202 L A 0.0000
203 H A -1.6688
204 D A -2.0898
205 L A 0.0000
206 V A 0.0000
207 R A -2.7967
208 H A -2.1745
209 Y A 0.0000
210 T A -2.2017
211 N A -2.2551
212 A A -1.6415
213 S A -1.3763
214 D A -1.4764
215 G A -1.1704
216 L A 0.0000
217 C A -0.2804
218 T A -0.8192
219 K A -2.2063
220 L A 0.0000
221 S A -1.4060
222 R A -1.5472
223 P A -0.9167
224 C A 0.0000
225 Q A -1.7570
226 T A -1.6483
227 Q A -2.4865
228 K A -2.8369
229 P A -2.0107
230 Q A -2.1327
231 K A -1.3270
232 P A 0.0000
233 W A -0.9969
234 W A 0.0000
235 E A -2.8570
236 D A -3.0531
237 E A -2.1621
238 W A -1.9659
239 E A -2.3053
240 V A 0.0000
241 P A -1.5282
242 R A -2.0041
243 E A -2.5273
244 T A -1.8033
245 L A -1.5280
246 K A -1.9930
247 L A -0.1465
248 V A 0.1825
249 E A -1.7169
250 R A -1.8908
251 L A -0.3951
252 G A -0.6530
253 A A -0.7679
254 G A -1.2333
255 Q A -1.8253
256 F A -1.0989
257 G A 0.0000
258 E A -1.2591
259 V A -0.3508
260 W A -0.4852
261 M A -0.6133
262 G A 0.0000
263 Y A -0.9486
264 Y A 0.0000
265 N A -2.3538
266 G A -1.9317
267 H A -1.9424
268 T A -1.3341
269 K A -1.5263
270 V A 0.0000
271 A A 0.0000
272 V A 0.0000
273 K A -0.4913
274 S A -0.7736
275 L A 0.0000
276 K A -2.8100
277 Q A -2.4512
278 G A -1.7798
279 S A -1.4797
280 M A 0.0000
281 S A -1.1275
282 P A -1.3164
283 D A -1.7546
284 A A -1.0255
285 F A 0.0000
286 L A -0.6166
287 A A -0.3768
288 E A -0.4628
289 A A 0.0000
290 N A -0.6210
291 L A -0.2431
292 M A 0.0000
293 K A -1.5568
294 Q A -1.9287
295 L A 0.0000
296 Q A -1.9045
297 H A -1.1204
298 P A -0.7214
299 R A 0.0000
300 L A 0.0000
301 V A 0.0000
302 R A -1.0588
303 L A -0.6750
304 Y A 0.0000
305 A A 0.0000
306 V A 0.0000
307 V A 0.0000
308 T A -1.4724
309 Q A -1.8750
310 E A -2.0270
311 P A -1.7638
312 I A 0.0000
313 Y A -0.7295
314 I A 0.0000
315 I A 0.0000
316 T A -0.2717
317 E A -0.5962
318 Y A -0.5854
319 M A 0.0000
320 E A -2.5957
321 N A -2.1262
322 G A -1.3119
323 S A -0.8825
324 L A 0.0000
325 V A -1.0360
326 D A -2.3024
327 F A 0.0000
328 L A 0.0000
329 K A -2.3543
330 T A -1.2805
331 P A -0.6066
332 S A -0.5992
333 G A 0.0000
334 I A -0.0008
335 K A -1.4889
336 L A -1.0394
337 N A -1.6187
338 V A -1.1314
339 N A -1.3731
340 K A -1.5163
341 L A 0.0000
342 L A 0.0000
343 D A -0.8759
344 M A 0.0000
345 A A 0.0000
346 A A 0.0000
347 Q A 0.0000
348 I A 0.0000
349 A A 0.0000
350 E A -0.9590
351 G A 0.0000
352 M A 0.0000
353 A A 0.0000
354 F A -1.3898
355 I A 0.0000
356 E A -1.9442
357 E A -2.8298
358 Q A -2.2308
359 N A -2.1098
360 Y A 0.0000
361 I A -0.1762
362 H A 0.0000
363 R A -0.5494
364 D A -0.4693
365 L A 0.0000
366 R A -0.3544
367 A A 0.0000
368 A A -0.3722
369 N A 0.0000
370 I A 0.0000
371 L A -0.4061
372 V A 0.0000
373 S A -1.5871
374 D A -2.5295
375 T A -1.1606
376 L A -0.7342
377 S A -0.4379
378 C A 0.0000
379 K A -0.2755
380 I A 0.0000
381 A A 0.0000
382 D A -0.6331
383 F A 0.0000
384 G A 0.0000
385 L A 0.0000
386 A A -0.4961
387 R A -0.9257
388 L A 0.0000
389 I A -0.9418
390 E A -2.4858
391 D A -2.3232
392 N A -2.5255
393 E A -2.8793
394 Y A -0.4938
395 T A -0.9772
396 A A -1.4958
397 R A -3.2037
398 E A -3.4252
399 G A -2.3913
400 A A -1.9399
401 K A -1.8634
402 F A -0.0222
403 P A -0.1939
404 I A 0.0000
405 K A 0.0000
406 W A 0.0403
407 T A 0.0000
408 A A 0.0000
409 P A -0.9720
410 E A -0.6718
411 A A 0.0000
412 I A 0.0000
413 N A -0.5790
414 Y A 0.7897
415 G A 0.2563
416 T A 0.0727
417 F A 0.3313
418 T A -0.0380
419 I A -0.0277
420 K A -0.9101
421 S A 0.0000
422 D A 0.0000
423 V A 0.0000
424 W A 0.0000
425 S A 0.0000
426 F A 0.0000
427 G A 0.0000
428 I A 0.0000
429 L A 0.0000
430 L A 0.0000
431 T A 0.0000
432 E A 0.0000
433 I A 0.0000
434 V A -0.5968
435 T A -0.7683
436 H A -0.8302
437 G A 0.0000
438 R A -1.1157
439 I A 1.0126
440 P A 0.0000
441 Y A 0.0000
442 P A -0.1996
443 G A -0.4228
444 M A -0.5711
445 T A -0.9817
446 N A -1.5930
447 P A -1.9004
448 E A -2.1247
449 V A 0.0000
450 I A -1.6194
451 Q A -2.7253
452 N A -2.2089
453 L A 0.0000
454 E A -3.2651
455 K A -2.9347
456 G A -2.1976
457 Y A -0.5033
458 R A -0.1160
459 M A 0.0000
460 V A 1.2182
461 R A -1.0125
462 P A -1.3049
463 D A -2.3804
464 N A -2.3982
465 C A 0.0000
466 P A -2.1619
467 E A -3.2147
468 E A -2.8645
469 L A 0.0000
470 Y A -1.3602
471 H A -1.9666
472 L A 0.0000
473 M A 0.0000
474 M A -0.3574
475 L A -0.3920
476 C A 0.0000
477 W A 0.0000
478 K A -2.5646
479 E A -3.7026
480 R A -3.8429
481 P A -2.7896
482 E A -3.2428
483 D A -2.8149
484 R A 0.0000
485 P A -0.7171
486 T A -0.8710
487 F A 0.0000
488 D A -2.0056
489 Y A -0.3349
490 L A 0.0000
491 R A -1.5983
492 S A -1.0545
493 V A -0.5244
494 L A 0.0000
495 D A -1.2802
496 D A -1.5813
497 F A -0.5799
498 F A -0.0798
499 T A -1.0595
500 A A -0.8044
501 T A -1.0102
502 E A -2.2151
503 G A -1.9222
504 Q A -2.1672
505 Y A -1.4001
506 Q A -1.5779
507 P A -1.4087
508 Q A -1.8962
509 P A -1.4629
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.

pH
Average A3D Score
Max A3D Score
4.0 -0.3722 4.2891 View CSV PDB
4.5 -0.4525 4.2006 View CSV PDB
5.0 -0.5539 4.0956 View CSV PDB
5.5 -0.6594 3.983 View CSV PDB
6.0 -0.7521 3.8676 View CSV PDB
6.5 -0.8196 3.7516 View CSV PDB
7.0 -0.8581 3.636 View CSV PDB
7.5 -0.874 3.5224 View CSV PDB
8.0 -0.8761 3.4506 View CSV PDB
8.5 -0.868 3.4506 View CSV PDB
9.0 -0.8497 3.4506 View CSV PDB