Zanidatamab / 5vsh

Calculation Parameters

Chain Sequence(s)	`EVQLVESGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRYAPGKGLEWVADVNPNSGGSIYNQRFKGRFTLSVDRSKNTLYLQMNSLRAEDTAVYYCARNLGPSFYFDYWGRGTLVTVSSASTKGPSVFPLAPCGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPDIQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQRKPGDAPKLLIYSASYRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQGTKVEIKRTVAAPSVFIFPPSKEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR` input.pdb
Selected Chain(s)	C (Heavy), D (Light)
Distance of Aggregation	10 Å
FoldX Energy Minimization	Yes
pH Calculations	Yes
Downloads	Download all data (.tar.gz)

Aggrescan4D Profile

Chain: Show buried residues (score = 0)

Aggregation-prone (score > 0)

Soluble (score < 0)

Buried (score = 0)

Per-Residue A4D Scores

Download CSV

Minimum Score -3.7572

Maximum Score 1.4949

Average Score -0.6422

Total Score -272.9522

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Classification:

Index	Residue	Chain	A4D Score	Classification
1	E	C	-2.0834	Soluble
2	V	C	-1.1352	Soluble
3	Q	C	-1.3215	Soluble
4	L	C	0.0000	Buried
5	V	C	0.7871	Aggregation-prone
6	E	C	0.0000	Buried
7	S	C	-0.3064	Soluble
8	G	C	-0.9594	Soluble
9	G	C	-0.6105	Soluble
11	G	C	-0.3476	Soluble
12	L	C	-0.1794	Soluble
13	V	C	0.0000	Buried
14	Q	C	-1.7324	Soluble
15	P	C	-1.9030	Soluble
16	G	C	-1.5562	Soluble
17	G	C	0.0000	Buried
18	S	C	-1.2993	Soluble
19	L	C	-1.1910	Soluble
20	R	C	-2.0729	Soluble
21	L	C	0.0000	Buried
22	S	C	-0.3475	Soluble
23	C	C	0.0000	Buried
24	A	C	-0.2432	Soluble
25	A	C	0.0000	Buried
26	S	C	-1.0399	Soluble
27	G	C	-1.2213	Soluble
28	F	C	-0.6143	Soluble
29	T	C	-0.6084	Soluble
30	F	C	0.0000	Buried
35	T	C	-1.8506	Soluble
36	D	C	-1.7350	Soluble
37	Y	C	-0.4113	Soluble
38	T	C	-0.2039	Soluble
39	M	C	0.0000	Buried
40	D	C	0.0000	Buried
41	W	C	0.0000	Buried
42	V	C	0.0000	Buried
43	R	C	0.0000	Buried
44	Y	C	-0.2680	Soluble
45	A	C	0.0000	Buried
46	P	C	-0.9730	Soluble
47	G	C	-1.5873	Soluble
48	K	C	-2.4682	Soluble
49	G	C	-1.4504	Soluble
50	L	C	0.0000	Buried
51	E	C	-0.5887	Soluble
52	W	C	0.0000	Buried
53	V	C	0.0000	Buried
54	A	C	0.0000	Buried
55	D	C	0.0000	Buried
56	V	C	0.0000	Buried
57	N	C	-1.0879	Soluble
58	P	C	0.0000	Buried
59	N	C	-2.3013	Soluble
62	S	C	-1.3387	Soluble
63	G	C	-1.2678	Soluble
64	G	C	-0.4844	Soluble
65	S	C	0.4228	Aggregation-prone
66	I	C	1.2065	Aggregation-prone
67	Y	C	-0.2826	Soluble
68	N	C	0.0000	Buried
69	Q	C	-2.5483	Soluble
70	R	C	-2.9838	Soluble
71	F	C	0.0000	Buried
72	K	C	-2.7054	Soluble
74	G	C	-1.9350	Soluble
75	R	C	-1.8271	Soluble
76	F	C	0.0000	Buried
77	T	C	-0.7701	Soluble
78	L	C	0.0000	Buried
79	S	C	-0.2945	Soluble
80	V	C	-1.2002	Soluble
81	D	C	-2.2429	Soluble
82	R	C	-3.2089	Soluble
83	S	C	-2.2442	Soluble
84	K	C	-2.8644	Soluble
85	N	C	-2.3574	Soluble
86	T	C	0.0000	Buried
87	L	C	0.0000	Buried
88	Y	C	-0.5083	Soluble
89	L	C	0.0000	Buried
90	Q	C	-1.2819	Soluble
91	M	C	0.0000	Buried
92	N	C	-1.4479	Soluble
93	S	C	-1.3402	Soluble
94	L	C	0.0000	Buried
95	R	C	-2.8976	Soluble
96	A	C	-1.9861	Soluble
97	E	C	-2.6012	Soluble
98	D	C	0.0000	Buried
99	T	C	-0.7768	Soluble
100	A	C	0.0000	Buried
101	V	C	0.1967	Aggregation-prone
102	Y	C	0.0000	Buried
103	Y	C	0.0000	Buried
104	C	C	0.0000	Buried
105	A	C	0.0000	Buried
106	R	C	0.0000	Buried
107	N	C	0.0000	Buried
108	L	C	1.1823	Aggregation-prone
109	G	C	0.3442	Aggregation-prone
110	P	C	0.4538	Aggregation-prone
112	S	C	0.7476	Aggregation-prone
113	F	C	0.9199	Aggregation-prone
114	Y	C	0.6507	Aggregation-prone
115	F	C	0.0000	Buried
116	D	C	0.1108	Aggregation-prone
117	Y	C	0.1957	Aggregation-prone
118	W	C	-0.2192	Soluble
119	G	C	0.0000	Buried
120	R	C	-1.8668	Soluble
121	G	C	0.0000	Buried
122	T	C	-0.1709	Soluble
123	L	C	0.2614	Aggregation-prone
124	V	C	0.0000	Buried
125	T	C	-0.5739	Soluble
126	V	C	0.0000	Buried
127	S	C	-0.9008	Soluble
128	S	C	-0.7482	Soluble
129	A	C	-0.4827	Soluble
130	S	C	-0.5836	Soluble
131	T	C	-0.5989	Soluble
132	K	C	-1.1350	Soluble
133	G	C	-1.3267	Soluble
134	P	C	0.0000	Buried
135	S	C	-0.3721	Soluble
136	V	C	0.0000	Buried
137	F	C	0.0000	Buried
138	P	C	-1.1613	Soluble
139	L	C	0.0000	Buried
140	A	C	-0.3498	Soluble
141	P	C	0.0346	Aggregation-prone
142	C	C	0.2781	Aggregation-prone
143	G	C	-0.7802	Soluble
144	G	C	-0.8508	Soluble
145	T	C	-0.6041	Soluble
146	A	C	-0.3210	Soluble
147	A	C	0.0000	Buried
148	L	C	0.0000	Buried
149	G	C	0.0000	Buried
150	C	C	0.0000	Buried
151	L	C	0.0000	Buried
152	V	C	0.0000	Buried
153	K	C	0.0000	Buried
154	D	C	-0.3326	Soluble
155	Y	C	0.0000	Buried
156	F	C	0.0000	Buried
157	P	C	0.0000	Buried
158	E	C	-0.4081	Soluble
159	P	C	-0.6642	Soluble
160	V	C	-0.4329	Soluble
161	T	C	-0.5023	Soluble
162	V	C	-0.0588	Soluble
163	S	C	-0.3093	Soluble
164	W	C	0.0000	Buried
165	N	C	-0.6557	Soluble
166	S	C	-0.5930	Soluble
167	G	C	-0.5595	Soluble
168	A	C	-0.2312	Soluble
169	L	C	0.0256	Aggregation-prone
170	T	C	-0.1474	Soluble
171	S	C	-0.1472	Soluble
172	G	C	-0.1422	Soluble
173	V	C	0.2045	Aggregation-prone
174	H	C	-0.2860	Soluble
175	T	C	0.0324	Aggregation-prone
176	F	C	0.0000	Buried
177	P	C	-0.3439	Soluble
178	A	C	0.2755	Aggregation-prone
179	V	C	0.6325	Aggregation-prone
180	L	C	1.4949	Aggregation-prone
181	Q	C	0.4715	Aggregation-prone
182	S	C	-0.0178	Soluble
183	S	C	-0.1758	Soluble
184	G	C	0.1014	Aggregation-prone
185	L	C	0.2379	Aggregation-prone
186	Y	C	0.5675	Aggregation-prone
187	S	C	0.0000	Buried
188	L	C	0.0000	Buried
189	S	C	0.0000	Buried
190	S	C	0.0000	Buried
191	V	C	0.0000	Buried
192	V	C	0.0000	Buried
193	T	C	-0.1066	Soluble
194	V	C	0.0000	Buried
195	P	C	-0.5045	Soluble
196	S	C	-0.5345	Soluble
197	S	C	-0.6315	Soluble
198	S	C	-0.6063	Soluble
199	L	C	-0.7463	Soluble
200	G	C	-0.9972	Soluble
201	T	C	-0.7717	Soluble
202	Q	C	-1.3249	Soluble
203	T	C	-1.2057	Soluble
204	Y	C	0.0000	Buried
205	I	C	-1.1998	Soluble
206	C	C	0.0000	Buried
207	N	C	-1.2925	Soluble
208	V	C	0.0000	Buried
209	N	C	-1.8168	Soluble
210	H	C	0.0000	Buried
211	K	C	-2.7383	Soluble
212	P	C	-1.6038	Soluble
213	S	C	-1.8120	Soluble
214	N	C	-2.5867	Soluble
215	T	C	-2.0301	Soluble
216	K	C	-2.6502	Soluble
217	V	C	-1.5562	Soluble
218	D	C	-1.9772	Soluble
219	K	C	-2.0204	Soluble
220	K	C	-2.4890	Soluble
221	V	C	0.0000	Buried
222	E	C	-2.5124	Soluble
223	P	C	-1.1866	Soluble
1	D	D	-1.9923	Soluble
2	I	D	0.0000	Buried
3	Q	D	-2.2717	Soluble
4	M	D	0.0000	Buried
5	T	D	-1.4445	Soluble
6	Q	D	0.0000	Buried
7	S	D	-0.7379	Soluble
8	P	D	-0.4387	Soluble
9	S	D	-0.7233	Soluble
10	S	D	-0.5832	Soluble
11	L	D	-0.4487	Soluble
12	S	D	-0.7693	Soluble
13	A	D	-1.0011	Soluble
14	S	D	-0.8362	Soluble
15	V	D	-0.0510	Soluble
16	G	D	-0.8159	Soluble
17	D	D	-1.8640	Soluble
18	R	D	-2.3048	Soluble
19	V	D	0.0000	Buried
20	T	D	-0.6453	Soluble
21	I	D	0.0000	Buried
22	T	D	-0.9095	Soluble
23	C	D	0.0000	Buried
24	K	D	-2.8272	Soluble
25	A	D	0.0000	Buried
26	S	D	-2.3032	Soluble
27	Q	D	-2.8170	Soluble
28	D	D	-2.7272	Soluble
29	V	D	0.0000	Buried
36	S	D	-0.6615	Soluble
37	I	D	0.3585	Aggregation-prone
38	G	D	0.0000	Buried
39	V	D	0.0000	Buried
40	A	D	0.0000	Buried
41	W	D	0.0000	Buried
42	Y	D	0.0000	Buried
43	Q	D	0.0000	Buried
44	R	D	0.0000	Buried
45	K	D	-1.8709	Soluble
46	P	D	-1.4171	Soluble
47	G	D	-1.4102	Soluble
48	D	D	-2.0798	Soluble
49	A	D	-1.3319	Soluble
50	P	D	0.0000	Buried
51	K	D	-1.0680	Soluble
52	L	D	0.0000	Buried
53	L	D	0.0000	Buried
54	I	D	0.0000	Buried
55	Y	D	0.5119	Aggregation-prone
56	S	D	0.4802	Aggregation-prone
57	A	D	0.0000	Buried
65	S	D	0.1867	Aggregation-prone
66	Y	D	0.8760	Aggregation-prone
67	R	D	-0.3711	Soluble
68	Y	D	-0.1892	Soluble
69	T	D	-0.3108	Soluble
70	G	D	-0.6432	Soluble
71	V	D	0.0000	Buried
72	P	D	-0.5642	Soluble
74	S	D	-0.6370	Soluble
75	R	D	-0.7309	Soluble
76	F	D	0.0000	Buried
77	S	D	-0.3704	Soluble
78	G	D	-0.2283	Soluble
79	S	D	-0.4657	Soluble
80	G	D	-0.8920	Soluble
83	S	D	-0.9882	Soluble
84	G	D	-1.7086	Soluble
85	T	D	-2.3409	Soluble
86	D	D	-2.8211	Soluble
87	F	D	0.0000	Buried
88	T	D	-0.8618	Soluble
89	L	D	0.0000	Buried
90	T	D	-0.5944	Soluble
91	I	D	0.0000	Buried
92	S	D	-1.3233	Soluble
93	S	D	-1.1086	Soluble
94	L	D	0.0000	Buried
95	Q	D	-1.0600	Soluble
96	P	D	-1.7937	Soluble
97	E	D	-2.3391	Soluble
98	D	D	0.0000	Buried
99	F	D	0.0000	Buried
100	A	D	0.0000	Buried
101	T	D	0.0000	Buried
102	Y	D	0.0000	Buried
103	Y	D	0.0000	Buried
104	C	D	0.0000	Buried
105	Q	D	0.0000	Buried
106	Q	D	0.0000	Buried
107	Y	D	0.0000	Buried
108	Y	D	1.4875	Aggregation-prone
109	I	D	1.4448	Aggregation-prone
114	Y	D	1.2128	Aggregation-prone
115	P	D	0.0000	Buried
116	Y	D	0.0000	Buried
117	T	D	-0.3081	Soluble
118	F	D	-0.3817	Soluble
119	G	D	0.0000	Buried
120	Q	D	-1.7706	Soluble
121	G	D	0.0000	Buried
122	T	D	0.0000	Buried
123	K	D	-1.0335	Soluble
124	V	D	0.0000	Buried
125	E	D	-1.2470	Soluble
126	I	D	0.0000	Buried
127	K	D	-1.2487	Soluble
128	R	D	-0.7138	Soluble
129	T	D	0.0166	Aggregation-prone
130	V	D	0.4640	Aggregation-prone
131	A	D	0.2146	Aggregation-prone
132	A	D	-0.0648	Soluble
133	P	D	0.0000	Buried
134	S	D	-0.0928	Soluble
135	V	D	0.0000	Buried
136	F	D	0.0790	Aggregation-prone
137	I	D	0.1064	Aggregation-prone
138	F	D	0.0000	Buried
139	P	D	-0.5828	Soluble
140	P	D	0.0000	Buried
141	S	D	-1.4214	Soluble
142	K	D	-2.6237	Soluble
143	E	D	-2.4139	Soluble
144	Q	D	0.0000	Buried
145	L	D	0.0000	Buried
146	K	D	-2.6781	Soluble
147	S	D	-1.6959	Soluble
148	G	D	-1.2680	Soluble
149	T	D	-0.8892	Soluble
150	A	D	0.0000	Buried
151	S	D	0.0000	Buried
152	V	D	0.0000	Buried
153	V	D	0.0000	Buried
154	C	D	0.0000	Buried
155	L	D	0.0000	Buried
156	L	D	0.0000	Buried
157	N	D	0.0000	Buried
158	N	D	-0.7958	Soluble
159	F	D	0.0000	Buried
160	Y	D	0.0000	Buried
161	P	D	-1.7125	Soluble
162	R	D	-3.0921	Soluble
163	E	D	-3.2654	Soluble
164	A	D	-2.3215	Soluble
165	K	D	-2.4692	Soluble
166	V	D	-1.0807	Soluble
167	Q	D	-0.4414	Soluble
168	W	D	0.0000	Buried
169	K	D	-0.4496	Soluble
170	V	D	0.0000	Buried
171	D	D	-1.7902	Soluble
172	N	D	-1.4286	Soluble
173	A	D	-0.1594	Soluble
174	L	D	0.8292	Aggregation-prone
175	Q	D	-0.0256	Soluble
176	S	D	-0.3698	Soluble
177	G	D	-0.8276	Soluble
178	N	D	-0.7078	Soluble
179	S	D	-0.9620	Soluble
180	Q	D	-1.0653	Soluble
181	E	D	-1.9897	Soluble
182	S	D	0.0000	Buried
183	V	D	-0.8367	Soluble
184	T	D	-1.1539	Soluble
185	E	D	-2.3064	Soluble
186	Q	D	0.0000	Buried
187	D	D	-2.0953	Soluble
188	S	D	-2.4555	Soluble
189	K	D	-2.7227	Soluble
190	D	D	-1.9728	Soluble
191	S	D	0.0000	Buried
192	T	D	0.0000	Buried
193	Y	D	0.0000	Buried
194	S	D	0.0000	Buried
195	L	D	0.0000	Buried
196	S	D	0.0000	Buried
197	S	D	0.0000	Buried
198	T	D	0.0000	Buried
199	L	D	0.0000	Buried
200	T	D	-0.3266	Soluble
201	L	D	-0.5764	Soluble
202	S	D	-0.9816	Soluble
203	K	D	-2.0588	Soluble
204	A	D	-1.8073	Soluble
205	D	D	-2.2184	Soluble
206	Y	D	0.0000	Buried
207	E	D	-3.7572	Soluble
208	K	D	-3.6810	Soluble
209	H	D	-3.2345	Soluble
210	K	D	-3.7190	Soluble
211	V	D	-2.0124	Soluble
212	Y	D	0.0000	Buried
213	A	D	0.0000	Buried
214	C	D	0.0000	Buried
215	E	D	-0.7857	Soluble
216	V	D	0.0000	Buried
217	T	D	-1.1843	Soluble
218	H	D	0.0000	Buried
219	Q	D	-1.5663	Soluble
220	G	D	-0.3509	Soluble
221	L	D	-0.2246	Soluble
222	S	D	-0.4728	Soluble
223	S	D	-0.4344	Soluble
224	P	D	-0.5486	Soluble
225	V	D	-0.1010	Soluble
226	T	D	-0.5703	Soluble
227	K	D	-0.8734	Soluble
228	S	D	-0.7637	Soluble
229	F	D	0.0000	Buried
230	N	D	-2.6989	Soluble
231	R	D	-3.4336	Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer | colored by A4D score

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Downloads

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Color Legend (B-factor = A4D Score)

Score > 1.5 — highly aggregation-prone

Score 0.5–1.5 — aggregation-prone

Score ≈ 0 — buried

Score −1 to −0.5 — soluble

Score < −2.5 — highly soluble

pH Structure

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A4D Score Threshold

Highlight residues > threshold in the sequence panel

Threshold: 0.0

CDR Regions

Outline CDR regions in sequence panel

HCDR1

HCDR2

HCDR3

LCDR1

LCDR2

LCDR3

Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH	Avg A4D Score	Max A4D Score	Downloads
4.0	-0.7006	2.7263	CSV PDB
4.5	-0.7367	2.7263	CSV PDB
5.0	-0.7794	2.7263	CSV PDB
5.5	-0.8201	2.7263	CSV PDB
6.0	-0.8484	2.7263	CSV PDB
6.5	-0.856	2.7263	CSV PDB
7.0	-0.8428	2.7263	CSV PDB
7.5	-0.8159	2.7263	CSV PDB
8.0	-0.7815	2.7262	CSV PDB
8.5	-0.7417	2.7259	CSV PDB
9.0	-0.6966	2.7251	CSV PDB