Paridiprubart / 4r7d

A4DAB203_4r7d_A_B | Source PDB: 4r7d | Chains: A, B | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7053
Max Score
1.7664
Min Score
-3.9726
Total Score
-302.55
Score CDR
-0.1768
Score non-CDR
-0.7672

Calculation Parameters

Chain Sequence(s) QVQLQESGPGLVKPSDTLSLTCAVSGYSITGGYSWHWIRQPPGKGLEWMGYIHYSGYTDFNPSLKTRITISRDTSKNQFSLKLSSVTAVDTAVYYCARKDPSDAFPYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPEIVLTQSPDFQSVTPKEKVTITCRASQSISDHLHWYQQKPDQSPKLLIKYASHAISGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQGHSFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR input.pdb
Selected Chain(s) A (Heavy), B (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.9726
Maximum Score 1.7664
Average Score -0.7053
Total Score -302.5546

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q A -1.3463 Soluble
2 V A -1.0102 Soluble
3 Q A -1.7346 Soluble
4 L A 0.0000 Buried
5 Q A -1.8029 Soluble
6 E A 0.0000 Buried
7 S A -0.6094 Soluble
8 G A -0.3383 Soluble
9 P A -0.4667 Soluble
11 G A -0.3413 Soluble
12 L A -0.3356 Soluble
13 V A 0.0000 Buried
14 K A -2.1103 Soluble
15 P A -1.3908 Soluble
16 S A -1.1994 Soluble
17 D A -1.5338 Soluble
18 T A -1.2182 Soluble
19 L A 0.0000 Buried
20 S A -0.8763 Soluble
21 L A 0.0000 Buried
22 T A -0.8452 Soluble
23 C A 0.0000 Buried
24 A A -1.3251 Soluble
25 V A 0.0000 Buried
26 S A -1.1449 Soluble
27 G A -0.8542 Soluble
28 Y A -0.2992 Soluble
29 S A -0.2608 Soluble
30 I A 0.0000 Buried
31 T A -0.1042 Soluble
35 G A -0.2026 Soluble
36 G A 0.1297 Aggregation-prone
37 Y A 0.2707 Aggregation-prone
38 S A 0.0000 Buried
39 W A 0.0000 Buried
40 H A 0.0000 Buried
41 W A 0.0000 Buried
42 I A 0.0000 Buried
43 R A 0.0000 Buried
44 Q A -0.7925 Soluble
45 P A -0.6478 Soluble
46 P A -1.0238 Soluble
47 G A -1.4906 Soluble
48 K A -2.2841 Soluble
49 G A -1.4204 Soluble
50 L A 0.0000 Buried
51 E A -0.8780 Soluble
52 W A 0.0000 Buried
53 M A 0.0000 Buried
54 G A 0.0000 Buried
55 Y A 0.0000 Buried
56 I A 0.0000 Buried
57 H A 0.4062 Aggregation-prone
58 Y A 0.7189 Aggregation-prone
59 S A 0.3747 Aggregation-prone
63 G A 0.3639 Aggregation-prone
64 Y A 1.0832 Aggregation-prone
65 T A 0.3752 Aggregation-prone
66 D A -0.1527 Soluble
67 F A -0.4010 Soluble
68 N A -0.7596 Soluble
69 P A -1.0817 Soluble
70 S A -0.8254 Soluble
71 L A 0.0000 Buried
72 K A -1.8687 Soluble
74 T A -1.1113 Soluble
75 R A -1.2469 Soluble
76 I A 0.0000 Buried
77 T A -0.9838 Soluble
78 I A 0.0000 Buried
79 S A -0.9038 Soluble
80 R A -1.8275 Soluble
81 D A -2.8785 Soluble
82 T A -1.8859 Soluble
83 S A -1.8529 Soluble
84 K A -2.7493 Soluble
85 N A -1.9506 Soluble
86 Q A -1.9582 Soluble
87 F A 0.0000 Buried
88 S A -0.9462 Soluble
89 L A 0.0000 Buried
90 K A -1.5069 Soluble
91 L A 0.0000 Buried
92 S A -0.9337 Soluble
93 S A -0.8899 Soluble
94 V A 0.0000 Buried
95 T A 0.0171 Aggregation-prone
96 A A 0.6305 Aggregation-prone
97 V A 1.7664 Aggregation-prone
98 D A 0.0000 Buried
99 T A 0.5953 Aggregation-prone
100 A A 0.0000 Buried
101 V A -0.0486 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 A A 0.0000 Buried
106 R A 0.0000 Buried
107 K A 0.0000 Buried
108 D A -0.2961 Soluble
109 P A -0.3477 Soluble
110 S A 0.0000 Buried
113 D A 0.0000 Buried
114 A A 0.0000 Buried
115 F A 0.0000 Buried
116 P A -0.0773 Soluble
117 Y A -0.0131 Soluble
118 W A -0.5955 Soluble
119 G A 0.0000 Buried
120 Q A -2.0706 Soluble
121 G A 0.0000 Buried
122 T A -0.3756 Soluble
123 L A 0.0260 Aggregation-prone
124 V A 0.0000 Buried
125 T A -0.0711 Soluble
126 V A 0.0000 Buried
127 S A -0.7811 Soluble
128 S A -0.8899 Soluble
129 A A -0.5947 Soluble
130 S A -0.7432 Soluble
131 T A -0.7839 Soluble
132 K A -1.4551 Soluble
133 G A -1.7873 Soluble
134 P A -0.8839 Soluble
135 S A -0.3964 Soluble
136 V A 0.0000 Buried
137 F A 0.0000 Buried
138 P A -1.1577 Soluble
139 L A 0.0000 Buried
140 A A -0.5943 Soluble
141 P A -0.7892 Soluble
142 S A -0.4780 Soluble
143 S A -1.2009 Soluble
144 K A -2.1154 Soluble
145 S A -1.4078 Soluble
146 T A -1.0659 Soluble
147 S A -1.2363 Soluble
148 G A -1.2111 Soluble
149 G A -1.0962 Soluble
150 T A -0.7720 Soluble
151 A A 0.0000 Buried
152 A A 0.0000 Buried
153 L A 0.0000 Buried
154 G A 0.0000 Buried
155 C A 0.0000 Buried
156 L A 0.0000 Buried
157 V A 0.0000 Buried
158 K A 0.0000 Buried
159 D A -0.7610 Soluble
160 Y A 0.0000 Buried
161 F A 0.0000 Buried
162 P A 0.0000 Buried
163 E A -0.3517 Soluble
164 P A -0.6791 Soluble
165 V A -0.5791 Soluble
166 T A -0.6881 Soluble
167 V A -0.2568 Soluble
168 S A -0.4196 Soluble
169 W A 0.0000 Buried
170 N A -0.8532 Soluble
171 S A -0.6217 Soluble
172 G A -0.3847 Soluble
173 A A -0.1514 Soluble
174 L A 0.0481 Aggregation-prone
175 T A -0.1160 Soluble
176 S A -0.1500 Soluble
177 G A -0.1378 Soluble
178 V A 0.2107 Aggregation-prone
179 H A -0.2927 Soluble
180 T A -0.1796 Soluble
181 F A 0.0000 Buried
182 P A -0.3356 Soluble
183 A A 0.2267 Aggregation-prone
184 V A 0.5818 Aggregation-prone
185 L A 1.3016 Aggregation-prone
186 Q A 0.3029 Aggregation-prone
187 S A -0.0840 Soluble
188 S A -0.2776 Soluble
189 G A -0.0207 Soluble
190 L A 0.0139 Aggregation-prone
191 Y A 0.3708 Aggregation-prone
192 S A 0.0000 Buried
193 L A 0.0000 Buried
194 S A 0.0000 Buried
195 S A 0.0000 Buried
196 V A 0.0000 Buried
197 V A 0.0000 Buried
198 T A -0.1259 Soluble
199 V A 0.0000 Buried
200 P A -0.5811 Soluble
201 S A 0.0000 Buried
202 S A -1.0945 Soluble
203 S A -0.8425 Soluble
204 L A -1.1495 Soluble
205 G A -1.2115 Soluble
206 T A -0.7375 Soluble
207 Q A -1.0410 Soluble
208 T A -1.2189 Soluble
209 Y A 0.0000 Buried
210 I A -1.5020 Soluble
211 C A 0.0000 Buried
212 N A -1.5808 Soluble
213 V A 0.0000 Buried
214 N A -2.1589 Soluble
215 H A 0.0000 Buried
216 K A -2.8594 Soluble
217 P A -1.6971 Soluble
218 S A -1.9671 Soluble
219 N A -2.5610 Soluble
220 T A -2.2155 Soluble
221 K A -2.7850 Soluble
222 V A -1.6681 Soluble
223 D A -2.6630 Soluble
224 K A -2.2355 Soluble
225 R A -2.8687 Soluble
226 V A 0.0000 Buried
227 E A -2.4692 Soluble
228 P A -1.5782 Soluble
1 E B -1.2127 Soluble
2 I B 0.0000 Buried
3 V B 0.7388 Aggregation-prone
4 L B 0.0000 Buried
5 T B -0.8251 Soluble
6 Q B -1.1781 Soluble
7 S B -1.1108 Soluble
8 P B -0.9019 Soluble
9 D B -1.6948 Soluble
10 F B -0.2683 Soluble
11 Q B -0.6406 Soluble
12 S B -0.7259 Soluble
13 V B 0.0000 Buried
14 T B -1.9600 Soluble
15 P B -2.3052 Soluble
16 K B -3.2132 Soluble
17 E B -3.4961 Soluble
18 K B -3.2898 Soluble
19 V B 0.0000 Buried
20 T B -0.8345 Soluble
21 I B 0.0000 Buried
22 T B -0.9967 Soluble
23 C B 0.0000 Buried
24 R B -2.2333 Soluble
25 A B 0.0000 Buried
26 S B -1.1170 Soluble
27 Q B -1.5980 Soluble
28 S B -1.5787 Soluble
29 I B 0.0000 Buried
36 S B -1.3636 Soluble
37 D B -1.6625 Soluble
38 H B -1.0579 Soluble
39 L B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 Y B 0.0000 Buried
43 Q B 0.0000 Buried
44 Q B 0.0000 Buried
45 K B -2.0841 Soluble
46 P B -1.8671 Soluble
47 D B -2.6664 Soluble
48 Q B -2.6649 Soluble
49 S B -1.6278 Soluble
50 P B 0.0000 Buried
51 K B -1.4876 Soluble
52 L B 0.0000 Buried
53 L B 0.0000 Buried
54 I B 0.0000 Buried
55 K B -0.3781 Soluble
56 Y B -0.2727 Soluble
57 A B 0.0000 Buried
65 S B -0.8777 Soluble
66 H B -0.8691 Soluble
67 A B -0.3493 Soluble
68 I B -0.0649 Soluble
69 S B -0.2680 Soluble
70 G B -0.3406 Soluble
71 V B -0.1348 Soluble
72 P B -0.2772 Soluble
74 S B -0.5598 Soluble
75 R B -1.1085 Soluble
76 F B 0.0000 Buried
77 S B -0.6785 Soluble
78 G B -0.4856 Soluble
79 S B -0.8396 Soluble
80 G B -0.9859 Soluble
83 S B -1.1365 Soluble
84 G B -1.5012 Soluble
85 T B -1.8088 Soluble
86 D B -1.9553 Soluble
87 F B 0.0000 Buried
88 T B -0.7169 Soluble
89 L B 0.0000 Buried
90 T B -0.8618 Soluble
91 I B 0.0000 Buried
92 N B -2.6177 Soluble
93 S B -2.6709 Soluble
94 L B 0.0000 Buried
95 E B -2.8192 Soluble
96 A B -2.5968 Soluble
97 E B -2.7744 Soluble
98 D B 0.0000 Buried
99 A B 0.0000 Buried
100 A B 0.0000 Buried
101 T B -0.7711 Soluble
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 Q B 0.0000 Buried
106 Q B 0.0000 Buried
107 G B -0.3745 Soluble
108 H B -0.8752 Soluble
109 S B -0.1708 Soluble
114 F B 0.5691 Aggregation-prone
115 P B -0.0348 Soluble
116 L B 0.0000 Buried
117 T B 0.0729 Aggregation-prone
118 F B 0.2142 Aggregation-prone
119 G B 0.0000 Buried
120 G B -1.1401 Soluble
121 G B -1.0562 Soluble
122 T B 0.0000 Buried
123 K B -1.2708 Soluble
124 V B 0.0000 Buried
125 E B -0.9442 Soluble
126 I B 0.0000 Buried
127 K B -1.5489 Soluble
128 R B -1.0112 Soluble
129 T B 0.2798 Aggregation-prone
130 V B 1.0304 Aggregation-prone
131 A B 0.2254 Aggregation-prone
132 A B 0.0598 Aggregation-prone
133 P B 0.0000 Buried
134 S B -0.0504 Soluble
135 V B 0.0000 Buried
136 F B 0.0112 Aggregation-prone
137 I B -0.0104 Soluble
138 F B 0.0000 Buried
139 P B -0.7036 Soluble
140 P B 0.0000 Buried
141 S B -1.6761 Soluble
142 D B -3.0884 Soluble
143 E B -3.0582 Soluble
144 Q B 0.0000 Buried
145 L B -2.2307 Soluble
146 K B -2.9897 Soluble
147 S B -1.8859 Soluble
148 G B -1.5734 Soluble
149 T B -1.2023 Soluble
150 A B 0.0000 Buried
151 S B 0.0000 Buried
152 V B 0.0000 Buried
153 V B 0.0000 Buried
154 C B 0.0000 Buried
155 L B 0.0000 Buried
156 L B 0.0000 Buried
157 N B 0.0000 Buried
158 N B -0.8327 Soluble
159 F B 0.0000 Buried
160 Y B 0.0000 Buried
161 P B -1.6060 Soluble
162 R B -3.0285 Soluble
163 E B -3.2464 Soluble
164 A B -2.3471 Soluble
165 K B -2.2397 Soluble
166 V B -0.9746 Soluble
167 Q B -0.4305 Soluble
168 W B 0.0000 Buried
169 K B -0.5407 Soluble
170 V B 0.0000 Buried
171 D B -2.0783 Soluble
172 N B -1.3670 Soluble
173 A B -0.3270 Soluble
174 L B 0.7461 Aggregation-prone
175 Q B -0.1788 Soluble
176 S B -0.3827 Soluble
177 G B -0.8524 Soluble
178 N B -0.7271 Soluble
179 S B -0.9882 Soluble
180 Q B -1.1878 Soluble
181 E B -1.8527 Soluble
182 S B 0.0000 Buried
183 V B -1.0294 Soluble
184 T B -1.0555 Soluble
185 E B -2.0008 Soluble
186 Q B 0.0000 Buried
187 D B -1.9895 Soluble
188 S B -2.3865 Soluble
189 K B -2.8562 Soluble
190 D B -2.2986 Soluble
191 S B 0.0000 Buried
192 T B 0.0000 Buried
193 Y B 0.0000 Buried
194 S B 0.0000 Buried
195 L B 0.0000 Buried
196 S B 0.0000 Buried
197 S B 0.0000 Buried
198 T B 0.0000 Buried
199 L B 0.0000 Buried
200 T B -0.3792 Soluble
201 L B -0.6989 Soluble
202 S B -1.2903 Soluble
203 K B -2.0698 Soluble
204 A B -1.9067 Soluble
205 D B -2.7966 Soluble
206 Y B 0.0000 Buried
207 E B -3.9726 Soluble
208 K B -3.8098 Soluble
209 H B -3.5728 Soluble
210 K B -3.4579 Soluble
211 V B -1.9074 Soluble
212 Y B 0.0000 Buried
213 A B 0.0000 Buried
214 C B 0.0000 Buried
215 E B -0.8292 Soluble
216 V B 0.0000 Buried
217 T B -1.1652 Soluble
218 H B 0.0000 Buried
219 Q B -1.4917 Soluble
220 G B -0.3180 Soluble
221 L B -0.2508 Soluble
222 S B -0.5131 Soluble
223 S B -0.4666 Soluble
224 P B -0.5680 Soluble
225 V B -0.0504 Soluble
226 T B -0.5300 Soluble
227 K B -0.8188 Soluble
228 S B -0.6340 Soluble
229 F B -1.0525 Soluble
230 N B -2.4682 Soluble
231 R B -3.1239 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7435 2.1069 CSV PDB
4.5 -0.7873 2.0558 CSV PDB
5.0 -0.8373 1.9815 CSV PDB
5.5 -0.8823 1.9614 CSV PDB
6.0 -0.9096 1.9614 CSV PDB
6.5 -0.9112 1.9614 CSV PDB
7.0 -0.8902 1.9614 CSV PDB
7.5 -0.8558 1.9614 CSV PDB
8.0 -0.8144 1.9614 CSV PDB
8.5 -0.7672 1.9614 CSV PDB
9.0 -0.7134 1.9614 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH