Zanidatamab / 8pwh

Calculation Parameters

Chain Sequence(s)	`EVQLVESGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRQAPGKGLEWVADVNPNSGGSIYNQRFKGRFTLSVDRSKNTLYLQMNSLRAEDTAVYYCARNLGPSFYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDIQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQQKPGKAPKLLIYSASYRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC` input.pdb
Selected Chain(s)	D (Heavy), C (Light)
Distance of Aggregation	10 Å
FoldX Energy Minimization	Yes
pH Calculations	Yes
Downloads	Download all data (.tar.gz)

Aggrescan4D Profile

Chain: Show buried residues (score = 0)

Aggregation-prone (score > 0)

Soluble (score < 0)

Buried (score = 0)

Per-Residue A4D Scores

Download CSV

Minimum Score -3.5122

Maximum Score 2.2223

Average Score -0.6786

Total Score -295.8687

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Classification:

Index	Residue	Chain	A4D Score	Classification
1	E	D	-2.1463	Soluble
2	V	D	-1.0577	Soluble
3	Q	D	-1.1947	Soluble
4	L	D	0.0000	Buried
5	V	D	1.1828	Aggregation-prone
6	E	D	0.0000	Buried
7	S	D	-0.2921	Soluble
8	G	D	-0.8505	Soluble
9	G	D	-0.1942	Soluble
11	G	D	0.4419	Aggregation-prone
12	L	D	0.7891	Aggregation-prone
13	V	D	0.0000	Buried
14	Q	D	-1.5590	Soluble
15	P	D	-1.9225	Soluble
16	G	D	-1.7759	Soluble
17	G	D	-1.2618	Soluble
18	S	D	-1.3482	Soluble
19	L	D	-1.3370	Soluble
20	R	D	-2.3706	Soluble
21	L	D	0.0000	Buried
22	S	D	-0.5213	Soluble
23	C	D	0.0000	Buried
24	A	D	-0.1056	Soluble
25	A	D	0.0000	Buried
26	S	D	-0.7635	Soluble
27	G	D	-1.2709	Soluble
28	F	D	-0.7707	Soluble
29	T	D	-0.5732	Soluble
30	F	D	0.0000	Buried
35	T	D	-1.5467	Soluble
36	D	D	-1.8489	Soluble
37	Y	D	-0.7056	Soluble
38	T	D	-0.6262	Soluble
39	M	D	0.0000	Buried
40	D	D	0.0000	Buried
41	W	D	0.0000	Buried
42	V	D	0.0000	Buried
43	R	D	0.0000	Buried
44	Q	D	-0.6721	Soluble
45	A	D	-1.0556	Soluble
46	P	D	-0.8493	Soluble
47	G	D	-1.4753	Soluble
48	K	D	-2.4085	Soluble
49	G	D	-1.7186	Soluble
50	L	D	0.0000	Buried
51	E	D	-1.1090	Soluble
52	W	D	0.0000	Buried
53	V	D	0.0000	Buried
54	A	D	0.0000	Buried
55	D	D	0.0000	Buried
56	V	D	0.0000	Buried
57	N	D	-1.0037	Soluble
58	P	D	0.0000	Buried
59	N	D	-2.0363	Soluble
62	S	D	-1.1100	Soluble
63	G	D	-1.1785	Soluble
64	G	D	-0.4756	Soluble
65	S	D	0.1299	Aggregation-prone
66	I	D	0.9159	Aggregation-prone
67	Y	D	-0.0582	Soluble
68	N	D	-1.0756	Soluble
69	Q	D	-2.1446	Soluble
70	R	D	-2.8473	Soluble
71	F	D	0.0000	Buried
72	K	D	-2.6349	Soluble
74	G	D	-1.9419	Soluble
75	R	D	-1.7132	Soluble
76	F	D	0.0000	Buried
77	T	D	-0.9086	Soluble
78	L	D	0.0000	Buried
79	S	D	-0.7437	Soluble
80	V	D	-1.1466	Soluble
81	D	D	-1.8861	Soluble
82	R	D	-2.9717	Soluble
83	S	D	-2.1542	Soluble
84	K	D	-2.7333	Soluble
85	N	D	-2.1957	Soluble
86	T	D	-1.1741	Soluble
87	L	D	0.0000	Buried
88	Y	D	-0.7031	Soluble
89	L	D	0.0000	Buried
90	Q	D	-1.7558	Soluble
91	M	D	0.0000	Buried
92	N	D	-1.7533	Soluble
93	S	D	-1.2912	Soluble
94	L	D	0.0000	Buried
95	R	D	-2.9071	Soluble
96	A	D	-2.0398	Soluble
97	E	D	-2.3979	Soluble
98	D	D	0.0000	Buried
99	T	D	-0.3954	Soluble
100	A	D	0.0000	Buried
101	V	D	0.5625	Aggregation-prone
102	Y	D	0.0000	Buried
103	Y	D	0.0000	Buried
104	C	D	0.0000	Buried
105	A	D	0.0000	Buried
106	R	D	0.0000	Buried
107	N	D	0.0000	Buried
108	L	D	0.3023	Aggregation-prone
109	G	D	-0.1408	Soluble
110	P	D	-0.3391	Soluble
112	S	D	0.3625	Aggregation-prone
113	F	D	0.5193	Aggregation-prone
114	Y	D	0.4074	Aggregation-prone
115	F	D	0.0000	Buried
116	D	D	0.0000	Buried
117	Y	D	0.4152	Aggregation-prone
118	W	D	-0.1667	Soluble
119	G	D	0.0000	Buried
120	Q	D	-1.2045	Soluble
121	G	D	0.0000	Buried
122	T	D	0.4366	Aggregation-prone
123	L	D	1.1309	Aggregation-prone
124	V	D	0.0000	Buried
125	T	D	0.1857	Aggregation-prone
126	V	D	0.0000	Buried
127	S	D	-0.9459	Soluble
128	S	D	-0.6031	Soluble
129	A	D	-0.3994	Soluble
130	S	D	-0.4747	Soluble
131	T	D	-0.6050	Soluble
132	K	D	-1.0086	Soluble
133	G	D	-1.3829	Soluble
134	P	D	-0.7378	Soluble
135	S	D	-0.3417	Soluble
136	V	D	-0.4293	Soluble
137	F	D	0.0000	Buried
138	P	D	-0.9724	Soluble
139	L	D	0.0000	Buried
140	A	D	-0.8144	Soluble
141	P	D	0.0000	Buried
142	S	D	0.0000	Buried
143	S	D	-1.1360	Soluble
144	K	D	-2.0315	Soluble
145	S	D	-0.9764	Soluble
146	T	D	-1.0054	Soluble
147	S	D	-0.9710	Soluble
148	G	D	-1.0578	Soluble
149	G	D	-0.9455	Soluble
150	T	D	-0.6475	Soluble
151	A	D	0.0000	Buried
152	A	D	0.0000	Buried
153	L	D	0.0000	Buried
154	G	D	0.0000	Buried
155	C	D	0.0000	Buried
156	L	D	0.0000	Buried
157	V	D	0.0000	Buried
158	K	D	-0.4648	Soluble
159	D	D	-0.7818	Soluble
160	Y	D	0.0000	Buried
161	F	D	0.0000	Buried
162	P	D	-0.9854	Soluble
163	E	D	-1.3916	Soluble
164	P	D	-1.2488	Soluble
165	V	D	-0.9159	Soluble
166	T	D	-0.6927	Soluble
167	V	D	-0.3351	Soluble
168	S	D	-0.3758	Soluble
169	W	D	0.0000	Buried
170	N	D	-0.7198	Soluble
171	S	D	-0.6326	Soluble
172	G	D	-0.5196	Soluble
173	A	D	-0.1931	Soluble
174	L	D	0.0146	Aggregation-prone
175	T	D	-0.1767	Soluble
176	S	D	-0.2435	Soluble
177	G	D	-0.2981	Soluble
178	V	D	0.2252	Aggregation-prone
179	H	D	0.0133	Aggregation-prone
180	T	D	0.1222	Aggregation-prone
181	F	D	0.0000	Buried
182	P	D	-0.1746	Soluble
183	A	D	0.3098	Aggregation-prone
184	V	D	0.6594	Aggregation-prone
185	L	D	1.4518	Aggregation-prone
186	Q	D	0.2892	Aggregation-prone
187	S	D	-0.0885	Soluble
188	S	D	-0.1536	Soluble
189	G	D	0.1215	Aggregation-prone
190	L	D	-0.1532	Soluble
191	Y	D	0.3293	Aggregation-prone
192	S	D	0.0000	Buried
193	L	D	0.3090	Aggregation-prone
194	S	D	0.0000	Buried
195	S	D	0.0000	Buried
196	V	D	0.0000	Buried
197	V	D	0.0000	Buried
198	T	D	-0.1690	Soluble
199	V	D	0.0000	Buried
200	P	D	-0.5505	Soluble
201	S	D	-0.6715	Soluble
202	S	D	-0.5748	Soluble
203	S	D	-0.5461	Soluble
204	L	D	-0.5302	Soluble
205	G	D	-0.7470	Soluble
206	T	D	-0.7060	Soluble
207	Q	D	-0.8936	Soluble
208	T	D	-0.8808	Soluble
209	Y	D	0.0000	Buried
210	I	D	-1.2749	Soluble
211	C	D	0.0000	Buried
212	N	D	-1.5518	Soluble
213	V	D	0.0000	Buried
214	N	D	-2.1096	Soluble
215	H	D	0.0000	Buried
216	K	D	-2.9675	Soluble
217	P	D	-1.8201	Soluble
218	S	D	-1.8440	Soluble
219	N	D	-2.6499	Soluble
220	T	D	-2.0283	Soluble
221	K	D	-2.7276	Soluble
222	V	D	-1.5137	Soluble
223	D	D	-2.6004	Soluble
224	K	D	-2.1180	Soluble
225	K	D	-2.7752	Soluble
226	V	D	0.0000	Buried
227	E	D	-2.3040	Soluble
228	P	D	-1.6449	Soluble
229	K	D	-2.3002	Soluble
230	S	D	-1.2263	Soluble
231	C	D	-1.4291	Soluble
1	D	C	-1.9613	Soluble
2	I	C	0.0000	Buried
3	Q	C	-2.1897	Soluble
4	M	C	0.0000	Buried
5	T	C	-1.0546	Soluble
6	Q	C	0.0000	Buried
7	S	C	-0.7028	Soluble
8	P	C	-0.4192	Soluble
9	S	C	-0.6134	Soluble
10	S	C	-0.7819	Soluble
11	L	C	-0.2226	Soluble
12	S	C	-0.6946	Soluble
13	A	C	0.0000	Buried
14	S	C	-1.0909	Soluble
15	V	C	-0.7235	Soluble
16	G	C	-1.5420	Soluble
17	D	C	-2.7994	Soluble
18	R	C	-2.7117	Soluble
19	V	C	-1.2161	Soluble
20	T	C	-0.4060	Soluble
21	I	C	0.0000	Buried
22	T	C	-0.7778	Soluble
23	C	C	0.0000	Buried
24	K	C	-2.3283	Soluble
25	A	C	-2.0500	Soluble
26	S	C	-2.1756	Soluble
27	Q	C	-2.5997	Soluble
28	D	C	-2.4743	Soluble
29	V	C	0.0000	Buried
36	S	C	0.1834	Aggregation-prone
37	I	C	1.5520	Aggregation-prone
38	G	C	0.0000	Buried
39	V	C	0.0000	Buried
40	A	C	0.0000	Buried
41	W	C	0.0000	Buried
42	Y	C	0.0000	Buried
43	Q	C	-0.7165	Soluble
44	Q	C	0.0000	Buried
45	K	C	-1.8803	Soluble
46	P	C	-1.5284	Soluble
47	G	C	-1.7846	Soluble
48	K	C	-2.6241	Soluble
49	A	C	-1.5587	Soluble
50	P	C	0.0000	Buried
51	K	C	-1.3169	Soluble
52	L	C	0.0000	Buried
53	L	C	0.0000	Buried
54	I	C	0.0000	Buried
55	Y	C	0.8588	Aggregation-prone
56	S	C	0.8714	Aggregation-prone
57	A	C	0.0000	Buried
65	S	C	0.5162	Aggregation-prone
66	Y	C	0.9997	Aggregation-prone
67	R	C	-0.0971	Soluble
68	Y	C	-0.0908	Soluble
69	T	C	-0.2297	Soluble
70	G	C	-0.6154	Soluble
71	V	C	0.0000	Buried
72	P	C	-0.5710	Soluble
74	S	C	-0.7216	Soluble
75	R	C	-0.7773	Soluble
76	F	C	0.0000	Buried
77	S	C	-0.2158	Soluble
78	G	C	0.0000	Buried
79	S	C	-0.3189	Soluble
80	G	C	-0.9001	Soluble
83	S	C	-0.7835	Soluble
84	G	C	-1.3217	Soluble
85	T	C	-1.9871	Soluble
86	D	C	-2.4400	Soluble
87	F	C	0.0000	Buried
88	T	C	-0.7572	Soluble
89	L	C	0.0000	Buried
90	T	C	-0.5794	Soluble
91	I	C	0.0000	Buried
92	S	C	-1.5845	Soluble
93	S	C	-1.5149	Soluble
94	L	C	0.0000	Buried
95	Q	C	-1.2265	Soluble
96	P	C	-1.0544	Soluble
97	E	C	-1.9722	Soluble
98	D	C	0.0000	Buried
99	F	C	-0.4162	Soluble
100	A	C	0.0000	Buried
101	T	C	-0.6040	Soluble
102	Y	C	0.0000	Buried
103	Y	C	0.0000	Buried
104	C	C	0.0000	Buried
105	Q	C	0.0000	Buried
106	Q	C	0.0000	Buried
107	Y	C	1.6291	Aggregation-prone
108	Y	C	2.2223	Aggregation-prone
109	I	C	1.8142	Aggregation-prone
114	Y	C	1.0953	Aggregation-prone
115	P	C	0.0000	Buried
116	Y	C	0.6072	Aggregation-prone
117	T	C	-0.3560	Soluble
118	F	C	0.0000	Buried
119	G	C	-1.0822	Soluble
120	Q	C	-1.6264	Soluble
121	G	C	-1.1171	Soluble
122	T	C	0.0000	Buried
123	K	C	-0.6376	Soluble
124	V	C	0.0000	Buried
125	E	C	0.0000	Buried
126	I	C	-0.4981	Soluble
127	K	C	-1.6856	Soluble
128	R	C	-1.5315	Soluble
129	T	C	-0.2826	Soluble
130	V	C	0.6243	Aggregation-prone
131	A	C	0.2777	Aggregation-prone
132	A	C	0.1853	Aggregation-prone
133	P	C	-0.0694	Soluble
134	S	C	-0.2539	Soluble
135	V	C	0.0000	Buried
136	F	C	0.0000	Buried
137	I	C	0.0000	Buried
138	F	C	0.0000	Buried
139	P	C	-0.7361	Soluble
140	P	C	-0.7439	Soluble
141	S	C	-1.3030	Soluble
142	D	C	-2.6194	Soluble
143	E	C	-2.2515	Soluble
144	Q	C	0.0000	Buried
145	L	C	-2.0592	Soluble
146	K	C	-2.7112	Soluble
147	S	C	-1.8061	Soluble
148	G	C	-1.6532	Soluble
149	T	C	-1.3124	Soluble
150	A	C	0.0000	Buried
151	S	C	0.0000	Buried
152	V	C	0.0000	Buried
153	V	C	0.0000	Buried
154	C	C	0.0000	Buried
155	L	C	0.0000	Buried
156	L	C	0.0000	Buried
157	N	C	0.0000	Buried
158	N	C	-1.0724	Soluble
159	F	C	0.0000	Buried
160	Y	C	0.0000	Buried
161	P	C	0.0000	Buried
162	R	C	-2.6539	Soluble
163	E	C	-3.1179	Soluble
164	A	C	0.0000	Buried
165	K	C	-2.5851	Soluble
166	V	C	-1.2687	Soluble
167	Q	C	-0.6194	Soluble
168	W	C	0.0000	Buried
169	K	C	-0.4696	Soluble
170	V	C	0.0000	Buried
171	D	C	-1.2007	Soluble
172	N	C	-1.1976	Soluble
173	A	C	-0.2949	Soluble
174	L	C	0.6047	Aggregation-prone
175	Q	C	-0.2126	Soluble
176	S	C	-0.5941	Soluble
177	G	C	-0.9981	Soluble
178	N	C	-1.1330	Soluble
179	S	C	-1.1733	Soluble
180	Q	C	-1.2632	Soluble
181	E	C	-1.7348	Soluble
182	S	C	-0.6209	Soluble
183	V	C	-0.1948	Soluble
184	T	C	-0.7058	Soluble
185	E	C	-2.1220	Soluble
186	Q	C	-1.7346	Soluble
187	D	C	-2.0892	Soluble
188	S	C	-1.8416	Soluble
189	K	C	-2.3960	Soluble
190	D	C	-2.1584	Soluble
191	S	C	-2.0259	Soluble
192	T	C	0.0000	Buried
193	Y	C	0.0000	Buried
194	S	C	0.0000	Buried
195	L	C	0.0000	Buried
196	S	C	0.0000	Buried
197	S	C	0.0000	Buried
198	T	C	-0.6119	Soluble
199	L	C	0.0000	Buried
200	T	C	-0.5480	Soluble
201	L	C	0.0000	Buried
202	S	C	-1.0722	Soluble
203	K	C	-1.7427	Soluble
204	A	C	-1.6148	Soluble
205	D	C	-2.1777	Soluble
206	Y	C	-2.3357	Soluble
207	E	C	-3.5122	Soluble
208	K	C	-3.4108	Soluble
209	H	C	-3.0092	Soluble
210	K	C	-2.5102	Soluble
211	V	C	-0.4587	Soluble
212	Y	C	0.0000	Buried
213	A	C	0.0000	Buried
214	C	C	0.0000	Buried
215	E	C	-0.6606	Soluble
216	V	C	0.0000	Buried
217	T	C	-1.1861	Soluble
218	H	C	-1.4217	Soluble
219	Q	C	-1.1522	Soluble
220	G	C	0.0191	Aggregation-prone
221	L	C	0.7591	Aggregation-prone
222	S	C	-0.0623	Soluble
223	S	C	-0.2209	Soluble
224	P	C	-0.2712	Soluble
225	V	C	0.2000	Aggregation-prone
226	T	C	-0.2643	Soluble
227	K	C	-0.4146	Soluble
228	S	C	-0.5066	Soluble
229	F	C	-0.7506	Soluble
230	N	C	-1.6251	Soluble
231	R	C	-2.4706	Soluble
232	G	C	-1.7829	Soluble
233	E	C	-2.1559	Soluble
234	C	C	-1.2805	Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer | colored by A4D score

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Downloads

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Color Legend (B-factor = A4D Score)

Score > 1.5 — highly aggregation-prone

Score 0.5–1.5 — aggregation-prone

Score ≈ 0 — buried

Score −1 to −0.5 — soluble

Score < −2.5 — highly soluble

pH Structure

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A4D Score Threshold

Highlight residues > threshold in the sequence panel

Threshold: 0.0

CDR Regions

Outline CDR regions in sequence panel

HCDR1

HCDR2

HCDR3

LCDR1

LCDR2

LCDR3

Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH	Avg A4D Score	Max A4D Score	Downloads
4.0	-0.6892	2.7519	CSV PDB
4.5	-0.7304	2.7089	CSV PDB
5.0	-0.7791	2.6625	CSV PDB
5.5	-0.825	2.6149	CSV PDB
6.0	-0.8561	2.5669	CSV PDB
6.5	-0.8633	2.5189	CSV PDB
7.0	-0.8475	2.4712	CSV PDB
7.5	-0.8173	2.4244	CSV PDB
8.0	-0.7797	2.3804	CSV PDB
8.5	-0.7367	2.3421	CSV PDB
9.0	-0.6876	2.3092	CSV PDB