Arumakimig / 5bvj

A4DAB025_5bvj_B_A | Source PDB: 5bvj | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7526
Max Score
1.4142
Min Score
-3.9287
Total Score
-328.87
Score CDR
-0.3963
Score non-CDR
-0.7935

Calculation Parameters

Chain Sequence(s) VQLVESGGGVVQPGRSLRLSCAASGFTFSVYGMNWVRQAPGKGLEWVAIIWYDGDNQYYADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLRTGPFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTEIVLTQSPDFQSVTPKEKVTITCRASQSIGSSLHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAAAYYCHQSSSLPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.9287
Maximum Score 1.4142
Average Score -0.7526
Total Score -328.8689

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 0.6582 Aggregation-prone
3 Q B -0.5373 Soluble
4 L B 0.0000 Buried
5 V B 0.1703 Aggregation-prone
6 E B 0.0000 Buried
7 S B -0.3730 Soluble
8 G B -0.6293 Soluble
9 G B -0.0488 Soluble
11 G B 0.4741 Aggregation-prone
12 V B 0.8523 Aggregation-prone
13 V B 0.0000 Buried
14 Q B -1.2557 Soluble
15 P B -1.8851 Soluble
16 G B -2.2066 Soluble
17 R B -2.7632 Soluble
18 S B -2.0314 Soluble
19 L B -1.4473 Soluble
20 R B -2.0097 Soluble
21 L B 0.0000 Buried
22 S B -0.3534 Soluble
23 C B 0.0000 Buried
24 A B -0.3778 Soluble
25 A B 0.0000 Buried
26 S B -0.5883 Soluble
27 G B -0.2092 Soluble
28 F B 0.2380 Aggregation-prone
29 T B 0.3196 Aggregation-prone
30 F B 0.0000 Buried
35 S B -0.0834 Soluble
36 V B 0.7921 Aggregation-prone
37 Y B 0.4385 Aggregation-prone
38 G B 0.0000 Buried
39 M B 0.0000 Buried
40 N B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.7204 Soluble
45 A B -1.1049 Soluble
46 P B -0.8775 Soluble
47 G B -1.5028 Soluble
48 K B -2.2391 Soluble
49 G B -1.3613 Soluble
50 L B 0.0000 Buried
51 E B -0.9710 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 A B 0.0000 Buried
55 I B 0.0000 Buried
56 I B 0.0000 Buried
57 W B -0.8495 Soluble
58 Y B -0.4141 Soluble
59 D B -2.0067 Soluble
62 G B -2.0525 Soluble
63 D B -2.7204 Soluble
64 N B -1.9177 Soluble
65 Q B -0.8248 Soluble
66 Y B -0.0821 Soluble
67 Y B -0.7346 Soluble
68 A B -1.5418 Soluble
69 D B -2.6539 Soluble
70 S B -1.8076 Soluble
71 V B 0.0000 Buried
72 K B -2.4952 Soluble
74 G B -1.7986 Soluble
75 R B -1.4061 Soluble
76 F B 0.0000 Buried
77 T B -0.7881 Soluble
78 I B 0.0000 Buried
79 S B -0.7755 Soluble
80 R B -1.1899 Soluble
81 D B -1.7133 Soluble
82 N B -1.7695 Soluble
83 S B -1.6438 Soluble
84 K B -2.4531 Soluble
85 N B -1.9163 Soluble
86 T B -1.0471 Soluble
87 L B 0.0000 Buried
88 Y B -0.2189 Soluble
89 L B 0.0000 Buried
90 Q B -1.1016 Soluble
91 M B 0.0000 Buried
92 N B -2.1916 Soluble
93 G B -1.9508 Soluble
94 L B 0.0000 Buried
95 R B -2.6322 Soluble
96 A B -1.6993 Soluble
97 E B -2.3040 Soluble
98 D B 0.0000 Buried
99 T B -0.5437 Soluble
100 A B 0.0000 Buried
101 V B 0.5784 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B 0.0000 Buried
107 D B 0.0000 Buried
108 L B -0.4483 Soluble
109 R B -1.4152 Soluble
110 T B -0.6424 Soluble
113 G B 0.0000 Buried
114 P B 0.0000 Buried
115 F B 0.0000 Buried
116 D B 0.0000 Buried
117 Y B 0.3734 Aggregation-prone
118 W B -0.1596 Soluble
119 G B 0.0000 Buried
120 Q B -1.5582 Soluble
121 G B -0.4956 Soluble
122 T B 0.0000 Buried
123 L B 1.2252 Aggregation-prone
124 V B 0.0000 Buried
125 T B 0.0589 Aggregation-prone
126 V B 0.0000 Buried
127 S B -0.5587 Soluble
128 S B -0.3808 Soluble
129 A B -0.2965 Soluble
130 S B -0.4350 Soluble
131 T B -0.5440 Soluble
132 K B -1.1230 Soluble
133 G B -1.3609 Soluble
134 P B 0.0000 Buried
135 S B -0.3326 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.1609 Soluble
139 L B 0.0000 Buried
140 A B -1.1689 Soluble
141 P B 0.0000 Buried
142 S B -1.0445 Soluble
143 S B -1.1510 Soluble
144 K B -1.1094 Soluble
145 S B 0.0000 Buried
146 T B -0.6792 Soluble
147 S B -0.7843 Soluble
148 G B -0.8824 Soluble
149 G B -0.9153 Soluble
150 T B -0.6435 Soluble
151 A B 0.0000 Buried
152 A B 0.0000 Buried
153 L B 0.0000 Buried
154 G B 0.0000 Buried
155 C B 0.0000 Buried
156 L B 0.0000 Buried
157 V B 0.0000 Buried
158 K B -0.3365 Soluble
159 D B -0.4199 Soluble
160 Y B 0.0000 Buried
161 F B 0.0000 Buried
162 P B -0.4716 Soluble
163 E B -0.6433 Soluble
164 P B -0.8954 Soluble
165 V B -0.7415 Soluble
166 T B -0.5663 Soluble
167 V B -0.1583 Soluble
168 S B -0.3122 Soluble
169 W B 0.0000 Buried
170 N B -0.7560 Soluble
171 S B -0.5932 Soluble
172 G B -0.4265 Soluble
173 A B -0.1944 Soluble
174 L B 0.0479 Aggregation-prone
175 T B -0.1432 Soluble
176 S B -0.1688 Soluble
177 G B -0.1831 Soluble
178 V B 0.1562 Aggregation-prone
179 H B -0.2498 Soluble
180 T B 0.0492 Aggregation-prone
181 F B 0.0000 Buried
182 P B -0.3240 Soluble
183 A B 0.1977 Aggregation-prone
184 V B 0.5579 Aggregation-prone
185 L B 1.4142 Aggregation-prone
186 Q B 0.3872 Aggregation-prone
187 S B 0.0090 Aggregation-prone
188 S B -0.1422 Soluble
189 G B 0.0964 Aggregation-prone
190 L B 0.1476 Aggregation-prone
191 Y B 0.4323 Aggregation-prone
192 S B 0.0000 Buried
193 L B 0.0000 Buried
194 S B 0.0000 Buried
195 S B 0.0000 Buried
196 V B 0.0000 Buried
197 V B 0.0000 Buried
198 T B -0.1139 Soluble
199 V B 0.0000 Buried
200 P B -0.5578 Soluble
201 S B -0.5757 Soluble
202 S B -0.5940 Soluble
203 S B -0.6162 Soluble
204 L B -0.7546 Soluble
205 G B -0.9537 Soluble
206 T B -0.7754 Soluble
207 Q B -1.3320 Soluble
208 T B -1.2740 Soluble
209 Y B 0.0000 Buried
210 I B -1.3452 Soluble
211 C B 0.0000 Buried
212 N B -1.4412 Soluble
213 V B 0.0000 Buried
214 N B -1.8578 Soluble
215 H B 0.0000 Buried
216 K B -2.7541 Soluble
217 P B -1.6526 Soluble
218 S B -1.8382 Soluble
219 N B -2.5873 Soluble
220 T B -2.0700 Soluble
221 K B -2.6712 Soluble
222 V B -1.6252 Soluble
223 D B -2.5810 Soluble
224 K B -2.3304 Soluble
225 R B -2.7637 Soluble
226 V B 0.0000 Buried
227 E B -2.7540 Soluble
228 P B -1.7944 Soluble
229 K B -1.9384 Soluble
230 S B -1.6781 Soluble
231 C B -1.9406 Soluble
232 D B -3.0392 Soluble
233 K B -2.7173 Soluble
234 T B -1.4953 Soluble
1 E A -1.6500 Soluble
2 I A -0.1643 Soluble
3 V A 0.8117 Aggregation-prone
4 L A 0.0000 Buried
5 T A -0.6961 Soluble
6 Q A 0.0000 Buried
7 S A -1.1847 Soluble
8 P A -1.1561 Soluble
9 D A -2.0496 Soluble
10 F A -1.1937 Soluble
11 Q A -0.8918 Soluble
12 S A -1.0334 Soluble
13 V A 0.0000 Buried
14 T A -2.1878 Soluble
15 P A -2.8220 Soluble
16 K A -3.5468 Soluble
17 E A -3.9287 Soluble
18 K A -3.1399 Soluble
19 V A 0.0000 Buried
20 T A -0.5309 Soluble
21 I A 0.0000 Buried
22 T A -1.0099 Soluble
23 C A 0.0000 Buried
24 R A -2.3065 Soluble
25 A A 0.0000 Buried
26 S A -0.9228 Soluble
27 Q A -1.6860 Soluble
28 S A -1.4080 Soluble
29 I A 0.0000 Buried
36 G A -0.7932 Soluble
37 S A -0.4917 Soluble
38 S A -0.1466 Soluble
39 L A 0.0000 Buried
40 H A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A 0.0000 Buried
45 K A -1.7584 Soluble
46 P A -1.9153 Soluble
47 D A -2.6609 Soluble
48 Q A -2.6485 Soluble
49 S A -1.7021 Soluble
50 P A 0.0000 Buried
51 K A -1.5873 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 K A -0.3664 Soluble
56 Y A 0.0282 Aggregation-prone
57 A A 0.0000 Buried
65 S A -0.8521 Soluble
66 Q A -1.2343 Soluble
67 S A -0.6887 Soluble
68 F A -0.4012 Soluble
69 S A -0.3955 Soluble
70 G A -0.4468 Soluble
71 V A -0.3352 Soluble
72 P A -0.3961 Soluble
74 S A -0.5971 Soluble
75 R A -1.1351 Soluble
76 F A 0.0000 Buried
77 S A -0.6676 Soluble
78 G A 0.0000 Buried
79 S A -0.7391 Soluble
80 G A -0.8433 Soluble
83 S A -1.0480 Soluble
84 G A -1.2630 Soluble
85 T A -1.8170 Soluble
86 D A -2.2112 Soluble
87 F A 0.0000 Buried
88 T A -0.7466 Soluble
89 L A 0.0000 Buried
90 T A -0.6250 Soluble
91 I A 0.0000 Buried
92 N A -2.3562 Soluble
93 S A -2.8499 Soluble
94 L A 0.0000 Buried
95 E A -3.1774 Soluble
96 A A -1.9920 Soluble
97 E A -2.3613 Soluble
98 D A 0.0000 Buried
99 A A -1.1992 Soluble
100 A A 0.0000 Buried
101 A A -0.6693 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 H A 0.0000 Buried
106 Q A 0.0000 Buried
107 S A -0.1253 Soluble
108 S A -0.2927 Soluble
109 S A -0.3437 Soluble
114 L A 0.0679 Aggregation-prone
115 P A -0.4124 Soluble
116 F A 0.0000 Buried
117 T A 0.0425 Aggregation-prone
118 F A 0.2399 Aggregation-prone
119 G A 0.0000 Buried
120 P A -0.7707 Soluble
121 G A -0.9963 Soluble
122 T A 0.0000 Buried
123 K A -1.2304 Soluble
124 V A 0.0000 Buried
125 D A 0.0000 Buried
126 I A -1.2809 Soluble
127 K A -1.6158 Soluble
128 R A -1.0165 Soluble
129 T A 0.0320 Aggregation-prone
130 V A 0.6479 Aggregation-prone
131 A A 0.0661 Aggregation-prone
132 A A -0.0575 Soluble
133 P A 0.0000 Buried
134 S A -0.2113 Soluble
135 V A 0.0000 Buried
136 F A 0.0000 Buried
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.8184 Soluble
140 P A -0.8449 Soluble
141 S A -1.6883 Soluble
142 D A -2.9518 Soluble
143 E A -2.8717 Soluble
144 Q A 0.0000 Buried
145 L A -2.1969 Soluble
146 K A -2.8354 Soluble
147 S A -1.7742 Soluble
148 G A -1.2368 Soluble
149 T A -1.2326 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.8704 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.4113 Soluble
162 R A -2.3373 Soluble
163 E A -2.8611 Soluble
164 A A -1.9241 Soluble
165 K A -2.0903 Soluble
166 V A -1.1002 Soluble
167 Q A -0.8265 Soluble
168 W A 0.0000 Buried
169 K A -0.4338 Soluble
170 V A 0.0000 Buried
171 D A -1.5566 Soluble
172 N A -1.3429 Soluble
173 A A -0.1035 Soluble
174 L A 0.7072 Aggregation-prone
175 Q A -0.1564 Soluble
176 S A -0.5333 Soluble
177 G A -0.9224 Soluble
178 N A -0.8481 Soluble
179 S A -1.2370 Soluble
180 Q A -1.5093 Soluble
181 E A -1.9281 Soluble
182 S A -0.6808 Soluble
183 V A -0.3514 Soluble
184 T A -0.9208 Soluble
185 E A -2.0993 Soluble
186 Q A -1.8378 Soluble
187 D A -1.9803 Soluble
188 S A -1.9548 Soluble
189 K A -2.4038 Soluble
190 D A -2.0621 Soluble
191 S A -1.9892 Soluble
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.7575 Soluble
199 L A 0.0000 Buried
200 T A -0.4562 Soluble
201 L A -0.7204 Soluble
202 S A -1.1131 Soluble
203 K A -2.0876 Soluble
204 A A -1.9731 Soluble
205 D A -2.7755 Soluble
206 Y A 0.0000 Buried
207 E A -3.6789 Soluble
208 K A -3.6336 Soluble
209 H A -3.0566 Soluble
210 K A -2.9525 Soluble
211 V A -1.4340 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -0.8007 Soluble
216 V A 0.0000 Buried
217 T A -1.1395 Soluble
218 H A 0.0000 Buried
219 Q A -1.5514 Soluble
220 G A -0.3354 Soluble
221 L A -0.2468 Soluble
222 S A -0.5047 Soluble
223 S A -0.4392 Soluble
224 P A -0.5374 Soluble
225 V A -0.0179 Soluble
226 T A -0.5067 Soluble
227 K A -0.8271 Soluble
228 S A -0.7703 Soluble
229 F A 0.0000 Buried
230 N A -1.8667 Soluble
231 R A -2.4800 Soluble
232 G A -2.1747 Soluble
233 E A -2.3847 Soluble
234 C A 0.0000 Buried

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7708 1.7891 CSV PDB
4.5 -0.8241 1.7891 CSV PDB
5.0 -0.8877 1.7891 CSV PDB
5.5 -0.9506 1.7891 CSV PDB
6.0 -1.0004 1.7891 CSV PDB
6.5 -1.0262 1.7891 CSV PDB
7.0 -1.0259 1.7891 CSV PDB
7.5 -1.0071 1.7891 CSV PDB
8.0 -0.9773 1.7891 CSV PDB
8.5 -0.939 1.7891 CSV PDB
9.0 -0.8918 1.7891 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH