Ponezumab / 3u0t

A4DAB210_3u0t_B_A | Source PDB: 3u0t | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6559
Max Score
1.6222
Min Score
-3.5476
Total Score
-280.06
Score CDR
0.0094
Score non-CDR
-0.7401

Calculation Parameters

Chain Sequence(s) QVQLVQSGAEVKKPGASVKVSCKASGYYTEAYYIHWVRQAPGQGLEWMGRIDPATGNTKYAPRLQDRVTMTRDTSTSTVYMELSSLRSEDTAVYYCASLYSLPVYWGQGTTVTVSSASTKGPSVFPLAPCSSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSQTYTCNVDHKPSNTKVDKTVERVVMTQSPLSLPVTLGQPASISCKSSQSLLYSDAKTYLNWFQQRPGQSPRRLIYQISRLDPGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCLQGTHYPVLFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5476
Maximum Score 1.6222
Average Score -0.6559
Total Score -280.0578

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q B -0.9392 Soluble
2 V B 0.0000 Buried
3 Q B -1.3360 Soluble
4 L B 0.0000 Buried
5 V B 0.4597 Aggregation-prone
6 Q B 0.0000 Buried
7 S B -0.5996 Soluble
8 G B -0.6822 Soluble
9 A B -0.4176 Soluble
11 E B -0.9664 Soluble
12 V B -0.3161 Soluble
13 K B -1.5602 Soluble
14 K B -2.3890 Soluble
15 P B -2.0206 Soluble
16 G B -1.5746 Soluble
17 A B -1.2586 Soluble
18 S B -1.3260 Soluble
19 V B 0.0000 Buried
20 K B -1.9858 Soluble
21 V B 0.0000 Buried
22 S B -0.5328 Soluble
23 C B 0.0000 Buried
24 K B -0.8358 Soluble
25 A B 0.0000 Buried
26 S B -0.6210 Soluble
27 G B -0.3649 Soluble
28 Y B 1.0651 Aggregation-prone
29 Y B 1.1603 Aggregation-prone
30 T B -0.2130 Soluble
35 E B -0.9603 Soluble
36 A B 0.0223 Aggregation-prone
37 Y B 0.3702 Aggregation-prone
38 Y B 0.1788 Aggregation-prone
39 I B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B -0.3520 Soluble
44 Q B -0.7382 Soluble
45 A B -1.1443 Soluble
46 P B -1.1500 Soluble
47 G B -1.2496 Soluble
48 Q B -2.0375 Soluble
49 G B -1.3042 Soluble
50 L B 0.0000 Buried
51 E B 0.0000 Buried
52 W B 0.0000 Buried
53 M B 0.0000 Buried
54 G B 0.0000 Buried
55 R B -0.8655 Soluble
56 I B 0.0000 Buried
57 D B -1.1154 Soluble
58 P B -1.1771 Soluble
59 A B -0.8605 Soluble
62 T B -0.9201 Soluble
63 G B -1.1664 Soluble
64 N B -1.7819 Soluble
65 T B -1.3324 Soluble
66 K B -1.4559 Soluble
67 Y B -1.2394 Soluble
68 A B 0.0000 Buried
69 P B -1.7134 Soluble
70 R B -2.5625 Soluble
71 L B 0.0000 Buried
72 Q B -2.8533 Soluble
74 D B -2.9063 Soluble
75 R B -2.0073 Soluble
76 V B 0.0000 Buried
77 T B -1.0351 Soluble
78 M B 0.0000 Buried
79 T B -0.8203 Soluble
80 R B -1.3753 Soluble
81 D B -1.2214 Soluble
82 T B -1.0145 Soluble
83 S B -0.5652 Soluble
84 T B -0.6846 Soluble
85 S B -1.0069 Soluble
86 T B 0.0000 Buried
87 V B 0.0000 Buried
88 Y B -0.6456 Soluble
89 M B 0.0000 Buried
90 E B -1.2524 Soluble
91 L B 0.0000 Buried
92 S B -1.2415 Soluble
93 S B -1.3140 Soluble
94 L B 0.0000 Buried
95 R B -3.0041 Soluble
96 S B -2.3645 Soluble
97 E B -2.6416 Soluble
98 D B 0.0000 Buried
99 T B -1.0739 Soluble
100 A B 0.0000 Buried
101 V B 0.1043 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 S B 0.0000 Buried
107 L B 0.0000 Buried
108 Y B 1.4655 Aggregation-prone
109 S B 1.3154 Aggregation-prone
114 L B 1.4596 Aggregation-prone
115 P B 0.7090 Aggregation-prone
116 V B 0.7723 Aggregation-prone
117 Y B 0.0160 Aggregation-prone
118 W B -0.1308 Soluble
119 G B 0.0000 Buried
120 Q B -1.0387 Soluble
121 G B -0.4480 Soluble
122 T B 0.0000 Buried
123 T B -0.2038 Soluble
124 V B 0.0000 Buried
125 T B 0.0000 Buried
126 V B 0.0000 Buried
127 S B -1.1806 Soluble
128 S B -0.9298 Soluble
129 A B -0.6008 Soluble
130 S B -0.6250 Soluble
131 T B -0.6461 Soluble
132 K B -1.2265 Soluble
133 G B -1.4740 Soluble
134 P B 0.0000 Buried
135 S B -0.2666 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -0.8542 Soluble
139 L B 0.0000 Buried
140 A B -0.7989 Soluble
141 P B -0.4159 Soluble
142 C B -0.3889 Soluble
143 S B -0.4744 Soluble
144 S B -1.1844 Soluble
145 E B -2.1195 Soluble
146 S B -1.3381 Soluble
147 T B -0.9167 Soluble
148 A B 0.0000 Buried
149 A B 0.0000 Buried
150 L B 0.0000 Buried
151 G B 0.0000 Buried
152 C B 0.0000 Buried
153 L B 0.0000 Buried
154 V B 0.0000 Buried
155 K B 0.0000 Buried
156 D B -0.6314 Soluble
157 Y B 0.0000 Buried
158 F B 0.0000 Buried
159 P B -0.9089 Soluble
160 E B -1.0547 Soluble
161 P B -1.0371 Soluble
162 V B -0.8286 Soluble
163 T B -0.6239 Soluble
164 V B -0.4188 Soluble
165 S B -0.5361 Soluble
166 W B 0.0000 Buried
167 N B -0.9071 Soluble
168 S B -0.8553 Soluble
169 G B -0.6477 Soluble
170 A B -0.2916 Soluble
171 L B -0.0639 Soluble
172 T B -0.1664 Soluble
173 S B -0.1511 Soluble
174 G B -0.1628 Soluble
175 V B 0.1815 Aggregation-prone
176 H B -0.3315 Soluble
177 T B 0.0185 Aggregation-prone
178 F B 0.0000 Buried
179 P B -0.3987 Soluble
180 A B -0.0012 Soluble
181 V B 0.2131 Aggregation-prone
182 L B 0.8283 Aggregation-prone
183 Q B 0.0360 Aggregation-prone
184 S B -0.1346 Soluble
185 S B -0.2897 Soluble
186 G B -0.0624 Soluble
187 L B -0.1472 Soluble
188 Y B 0.0000 Buried
189 S B 0.0000 Buried
190 L B 0.0000 Buried
191 S B 0.0000 Buried
192 S B 0.0000 Buried
193 V B 0.0000 Buried
194 V B 0.0000 Buried
195 T B -0.1356 Soluble
196 V B 0.0000 Buried
197 P B -0.8947 Soluble
198 S B -1.2910 Soluble
199 S B -0.6146 Soluble
200 Q B -1.8874 Soluble
201 T B -1.3349 Soluble
202 Y B -1.1015 Soluble
203 T B -0.9322 Soluble
204 C B 0.0000 Buried
205 N B -1.4970 Soluble
206 V B 0.0000 Buried
207 D B -1.9306 Soluble
208 H B 0.0000 Buried
209 K B -2.8288 Soluble
210 P B -1.7667 Soluble
211 S B -1.8426 Soluble
212 N B -2.6101 Soluble
213 T B -2.0768 Soluble
214 K B -2.6407 Soluble
215 V B -1.4294 Soluble
216 D B -2.1880 Soluble
217 K B -1.4162 Soluble
218 T B -1.0138 Soluble
219 V B 0.0000 Buried
220 E B -2.9680 Soluble
221 R B -2.9801 Soluble
2 V A 1.2245 Aggregation-prone
3 V A 1.6222 Aggregation-prone
4 M A 0.0000 Buried
5 T A -0.4308 Soluble
6 Q A 0.0000 Buried
7 S A -0.2530 Soluble
8 P A 0.1848 Aggregation-prone
9 L A 0.8752 Aggregation-prone
10 S A 0.1306 Aggregation-prone
11 L A -0.0487 Soluble
12 P A -0.4819 Soluble
13 V A 0.0000 Buried
14 T A -0.8475 Soluble
15 L A -0.5149 Soluble
16 G A -1.3785 Soluble
17 Q A -1.8164 Soluble
18 P A -1.8732 Soluble
19 A A 0.0000 Buried
20 S A -0.7304 Soluble
21 I A 0.0000 Buried
22 S A -0.9015 Soluble
23 C A 0.0000 Buried
24 K A -1.9771 Soluble
25 S A 0.0000 Buried
26 S A -0.3798 Soluble
27 Q A -0.7399 Soluble
28 S A -0.3446 Soluble
29 L A 0.0000 Buried
30 L A 1.3124 Aggregation-prone
31 Y A 1.2096 Aggregation-prone
32 S A -0.0041 Soluble
34 D A -0.8754 Soluble
35 A A -0.3961 Soluble
36 K A -0.5510 Soluble
37 T A 0.0000 Buried
38 Y A 0.5858 Aggregation-prone
39 L A 0.0000 Buried
40 N A -0.2160 Soluble
41 W A 0.0000 Buried
42 F A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A -0.7685 Soluble
45 R A -1.2381 Soluble
46 P A -1.1451 Soluble
47 G A -1.1786 Soluble
48 Q A -1.2430 Soluble
49 S A -0.9399 Soluble
50 P A 0.0000 Buried
51 R A -0.7547 Soluble
52 R A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A -0.1098 Soluble
56 Q A -0.7929 Soluble
57 I A -0.8008 Soluble
65 S A -1.0545 Soluble
66 R A -1.6848 Soluble
67 L A -0.6752 Soluble
68 D A 0.0000 Buried
69 P A -0.2688 Soluble
70 G A -0.6371 Soluble
71 V A -0.5632 Soluble
72 P A -1.0441 Soluble
74 D A -1.9468 Soluble
75 R A -2.1133 Soluble
76 F A 0.0000 Buried
77 S A -1.2065 Soluble
78 G A -0.8767 Soluble
79 S A -1.1253 Soluble
80 G A -1.1768 Soluble
83 S A -0.8788 Soluble
84 G A -0.4799 Soluble
85 T A -1.5110 Soluble
86 D A -2.6061 Soluble
87 F A 0.0000 Buried
88 T A -1.1260 Soluble
89 L A 0.0000 Buried
90 K A -1.6366 Soluble
91 I A 0.0000 Buried
92 S A -2.1704 Soluble
93 R A -2.8076 Soluble
94 V A 0.0000 Buried
95 E A -2.3811 Soluble
96 A A -1.6851 Soluble
97 E A -2.2745 Soluble
98 D A 0.0000 Buried
99 V A -1.0798 Soluble
100 G A 0.0000 Buried
101 V A -0.2841 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 L A 0.0000 Buried
106 Q A 0.0000 Buried
107 G A 0.4591 Aggregation-prone
108 T A 0.7181 Aggregation-prone
109 H A 0.7214 Aggregation-prone
114 Y A 1.0673 Aggregation-prone
115 P A 0.6352 Aggregation-prone
116 V A 0.0000 Buried
117 L A 0.6602 Aggregation-prone
118 F A 0.0000 Buried
119 G A 0.0000 Buried
120 Q A -1.2329 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 R A -0.8518 Soluble
124 L A 0.0000 Buried
125 E A 0.0000 Buried
126 I A 0.0000 Buried
127 K A -0.8474 Soluble
128 R A -0.8242 Soluble
129 T A -0.1053 Soluble
130 V A 0.3512 Aggregation-prone
131 A A 0.0636 Aggregation-prone
132 A A -0.0999 Soluble
133 P A 0.0000 Buried
134 S A -0.1625 Soluble
135 V A 0.0000 Buried
136 F A -0.0231 Soluble
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.2585 Soluble
140 P A -0.8116 Soluble
141 S A -1.6682 Soluble
142 D A -2.9966 Soluble
143 E A -3.0968 Soluble
144 Q A 0.0000 Buried
145 L A -2.4025 Soluble
146 K A -2.9353 Soluble
147 S A -1.8525 Soluble
148 G A -1.3085 Soluble
149 T A -1.0626 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.8952 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A 0.0000 Buried
162 R A -1.9685 Soluble
163 E A -2.7458 Soluble
164 A A -2.1209 Soluble
165 K A -2.2530 Soluble
166 V A -1.1116 Soluble
167 Q A -0.5108 Soluble
168 W A 0.0000 Buried
169 K A -0.4757 Soluble
170 V A 0.0000 Buried
171 D A -1.8311 Soluble
172 N A -1.4602 Soluble
173 A A -0.3048 Soluble
174 L A 0.7343 Aggregation-prone
175 Q A -0.2389 Soluble
176 S A -0.7377 Soluble
177 G A -1.3349 Soluble
178 N A -1.6844 Soluble
179 S A -1.7343 Soluble
180 Q A -2.0268 Soluble
181 E A -2.1637 Soluble
182 S A -0.9220 Soluble
183 V A -0.8416 Soluble
184 T A -1.1037 Soluble
185 E A -2.2125 Soluble
186 Q A -1.8748 Soluble
187 D A -2.1539 Soluble
188 S A -2.2167 Soluble
189 K A -2.3673 Soluble
190 D A -1.9564 Soluble
191 S A -1.7337 Soluble
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.9202 Soluble
199 L A 0.0000 Buried
200 T A -0.5715 Soluble
201 L A -0.8165 Soluble
202 S A -1.0965 Soluble
203 K A -2.1090 Soluble
204 A A -1.9339 Soluble
205 D A -2.5884 Soluble
206 Y A 0.0000 Buried
207 E A -3.4601 Soluble
208 K A -3.5476 Soluble
209 H A -2.7619 Soluble
210 K A -2.7092 Soluble
211 V A -1.0035 Soluble
212 Y A 0.0000 Buried
213 A A -0.6301 Soluble
214 C A 0.0000 Buried
215 E A -0.6682 Soluble
216 V A 0.0000 Buried
217 T A -1.1546 Soluble
218 H A 0.0000 Buried
219 Q A -1.6565 Soluble
220 G A -0.4475 Soluble
221 L A -0.1932 Soluble
222 S A -0.4132 Soluble
223 S A -0.3959 Soluble
224 P A -0.4547 Soluble
225 V A 0.1122 Aggregation-prone
226 T A -0.4395 Soluble
227 K A -0.7782 Soluble
228 S A -0.5930 Soluble
229 F A 0.0000 Buried
230 N A -1.5218 Soluble
231 R A -1.9263 Soluble
232 G A -1.7859 Soluble
233 E A -2.0927 Soluble
234 C A -0.4975 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6371 2.4578 CSV PDB
4.5 -0.6849 2.4578 CSV PDB
5.0 -0.7432 2.4578 CSV PDB
5.5 -0.8013 2.4578 CSV PDB
6.0 -0.8476 2.4578 CSV PDB
6.5 -0.8724 2.4578 CSV PDB
7.0 -0.8735 2.4578 CSV PDB
7.5 -0.857 2.4578 CSV PDB
8.0 -0.8303 2.4578 CSV PDB
8.5 -0.7964 2.4577 CSV PDB
9.0 -0.7556 2.4573 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH