Fepixnebart / 5kn5

A4DAB116_5kn5_A_B | Source PDB: 5kn5 | Chains: A, B | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6451
Max Score
1.963
Min Score
-3.6476
Total Score
-277.37
Score CDR
-0.0287
Score non-CDR
-0.7262

Calculation Parameters

Chain Sequence(s) QVQLVQSGAEVKKPGSSVKVSCKASGYTFTDAYINWVRQAPGQGLEWMGWIWPGPVITYYNPKFKGRVTITADKSTSTAYMELSSLRSEDTAVYYCARREVLSPFAYWGQGTTVTVSSASTKGPSVFPLAPCSSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVEDIVMTQSPDSLAVSLGERATINCRSSQSIVHSTGNTYLEWYQQKPGQPPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCFHGTHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR input.pdb
Selected Chain(s) A (Heavy), B (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.6476
Maximum Score 1.963
Average Score -0.6451
Total Score -277.3737

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q A -1.3811 Soluble
2 V A -0.6942 Soluble
3 Q A -1.3149 Soluble
4 L A 0.0000 Buried
5 V A -0.1083 Soluble
6 Q A 0.0000 Buried
7 S A -0.6098 Soluble
8 G A -0.6542 Soluble
9 A A -0.2619 Soluble
11 E A -0.4841 Soluble
12 V A 0.0853 Aggregation-prone
13 K A -1.1921 Soluble
14 K A -1.9907 Soluble
15 P A -1.8871 Soluble
16 G A -1.4949 Soluble
17 S A -1.1821 Soluble
18 S A -1.1953 Soluble
19 V A 0.0000 Buried
20 K A -1.4876 Soluble
21 V A 0.0000 Buried
22 S A -0.5172 Soluble
23 C A 0.0000 Buried
24 K A -1.1164 Soluble
25 A A 0.0000 Buried
26 S A -0.7830 Soluble
27 G A -0.6691 Soluble
28 Y A -0.4782 Soluble
29 T A -0.5964 Soluble
30 F A 0.0000 Buried
35 T A -0.9579 Soluble
36 D A -1.7233 Soluble
37 A A 0.0000 Buried
38 Y A 0.0025 Aggregation-prone
39 I A 0.0000 Buried
40 N A 0.0000 Buried
41 W A 0.0000 Buried
42 V A 0.0000 Buried
43 R A 0.0000 Buried
44 Q A -0.6463 Soluble
45 A A -1.0766 Soluble
46 P A -1.1181 Soluble
47 G A -1.2389 Soluble
48 Q A -1.7488 Soluble
49 G A -1.1566 Soluble
50 L A 0.0000 Buried
51 E A -0.6078 Soluble
52 W A 0.0000 Buried
53 M A 0.0000 Buried
54 G A 0.0000 Buried
55 W A 0.0000 Buried
56 I A 0.0000 Buried
57 W A 0.9479 Aggregation-prone
58 P A 0.0000 Buried
59 G A -0.0510 Soluble
62 P A 0.6510 Aggregation-prone
63 V A 1.9630 Aggregation-prone
64 I A 1.9231 Aggregation-prone
65 T A 1.1886 Aggregation-prone
66 Y A 0.9983 Aggregation-prone
67 Y A -0.0111 Soluble
68 N A -0.7903 Soluble
69 P A -1.8552 Soluble
70 K A -2.4334 Soluble
71 F A 0.0000 Buried
72 K A -2.5826 Soluble
74 G A -1.7035 Soluble
75 R A -1.3486 Soluble
76 V A 0.0000 Buried
77 T A -0.4683 Soluble
78 I A 0.0000 Buried
79 T A -0.1156 Soluble
80 A A -0.4336 Soluble
81 D A -1.6099 Soluble
82 K A -1.9419 Soluble
83 S A -1.2512 Soluble
84 T A -1.1046 Soluble
85 S A -1.2508 Soluble
86 T A 0.0000 Buried
87 A A 0.0000 Buried
88 Y A -0.5372 Soluble
89 M A 0.0000 Buried
90 E A -1.2384 Soluble
91 L A 0.0000 Buried
92 S A -0.9729 Soluble
93 S A -1.0092 Soluble
94 L A 0.0000 Buried
95 R A -2.3815 Soluble
96 S A -2.0155 Soluble
97 E A -2.3577 Soluble
98 D A 0.0000 Buried
99 T A -0.8766 Soluble
100 A A 0.0000 Buried
101 V A -0.1115 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 A A 0.0000 Buried
106 R A 0.0000 Buried
107 R A 0.0000 Buried
108 E A -0.4470 Soluble
109 V A 1.2574 Aggregation-prone
110 L A 0.8750 Aggregation-prone
113 S A 0.2859 Aggregation-prone
114 P A 0.1529 Aggregation-prone
115 F A 0.0000 Buried
116 A A 0.0371 Aggregation-prone
117 Y A 0.1342 Aggregation-prone
118 W A -0.2090 Soluble
119 G A 0.0000 Buried
120 Q A -1.2989 Soluble
121 G A -0.6867 Soluble
122 T A 0.0000 Buried
123 T A -0.1625 Soluble
124 V A 0.0000 Buried
125 T A 0.0000 Buried
126 V A 0.0000 Buried
127 S A -1.0940 Soluble
128 S A -0.8902 Soluble
129 A A -0.5278 Soluble
130 S A -0.5083 Soluble
131 T A -0.5119 Soluble
132 K A -1.0178 Soluble
133 G A -1.2589 Soluble
134 P A -0.4599 Soluble
135 S A -0.3514 Soluble
136 V A 0.0000 Buried
137 F A -0.6791 Soluble
138 P A -1.1243 Soluble
139 L A 0.0000 Buried
140 A A -0.3712 Soluble
141 P A -0.0905 Soluble
142 C A 0.1638 Aggregation-prone
143 S A 0.0864 Aggregation-prone
144 S A -1.1953 Soluble
145 E A -2.0913 Soluble
146 S A -1.3032 Soluble
147 T A -0.8944 Soluble
148 A A -0.4290 Soluble
149 A A 0.0000 Buried
150 L A 0.0000 Buried
151 G A 0.0000 Buried
152 C A 0.0000 Buried
153 L A 0.0000 Buried
154 V A 0.0000 Buried
155 K A 0.0000 Buried
156 D A -0.2880 Soluble
157 Y A 0.0000 Buried
158 F A 0.0000 Buried
159 P A -0.6848 Soluble
160 E A -0.5511 Soluble
161 P A -0.8268 Soluble
162 V A -0.5991 Soluble
163 T A -0.4434 Soluble
164 V A -0.0621 Soluble
165 S A -0.4164 Soluble
166 W A 0.0000 Buried
167 N A -1.0069 Soluble
168 S A -0.7660 Soluble
169 G A -0.5800 Soluble
170 A A -0.2660 Soluble
171 L A -0.1138 Soluble
172 T A -0.1980 Soluble
173 S A -0.2081 Soluble
174 G A -0.2577 Soluble
175 V A 0.1584 Aggregation-prone
176 H A 0.0000 Buried
177 T A 0.1011 Aggregation-prone
178 F A 0.0000 Buried
179 P A -0.3941 Soluble
180 A A 0.1483 Aggregation-prone
181 V A 0.3332 Aggregation-prone
182 L A 1.0436 Aggregation-prone
183 Q A 0.2785 Aggregation-prone
184 S A -0.0972 Soluble
185 S A -0.1682 Soluble
186 G A 0.0622 Aggregation-prone
187 L A 0.1258 Aggregation-prone
188 Y A 0.2987 Aggregation-prone
189 S A 0.0000 Buried
190 L A 0.0000 Buried
191 S A 0.0000 Buried
192 S A 0.0000 Buried
193 V A 0.0000 Buried
194 V A 0.0000 Buried
195 T A -0.1885 Soluble
196 V A 0.0000 Buried
197 P A -0.5510 Soluble
198 S A -0.5599 Soluble
199 S A -0.4588 Soluble
200 S A -0.5272 Soluble
201 L A -0.5023 Soluble
202 G A -0.9198 Soluble
203 T A -0.8333 Soluble
204 K A -1.4710 Soluble
205 T A -1.4538 Soluble
206 Y A 0.0000 Buried
207 T A -1.9202 Soluble
208 C A 0.0000 Buried
209 N A -1.6411 Soluble
210 V A 0.0000 Buried
211 D A 0.0000 Buried
212 H A 0.0000 Buried
213 K A -2.5869 Soluble
214 P A -1.5651 Soluble
215 S A -1.7173 Soluble
216 N A -2.4960 Soluble
217 T A -1.9408 Soluble
218 K A -2.6012 Soluble
219 V A -1.6848 Soluble
220 D A -2.7945 Soluble
221 K A -2.4588 Soluble
222 R A -2.9976 Soluble
223 V A 0.0000 Buried
224 E A -2.3035 Soluble
1 D B -1.3929 Soluble
2 I B -0.3040 Soluble
3 V B 0.7843 Aggregation-prone
4 M B 0.0000 Buried
5 T B -0.9365 Soluble
6 Q B -1.4577 Soluble
7 S B -1.4531 Soluble
8 P B -1.4072 Soluble
9 D B -2.4884 Soluble
10 S B -1.4992 Soluble
11 L B -0.7878 Soluble
12 A B -0.7639 Soluble
13 V B 0.0000 Buried
14 S B -1.1540 Soluble
15 L B -0.2103 Soluble
16 G B -1.1913 Soluble
17 E B -2.5554 Soluble
18 R B -2.7107 Soluble
19 A B 0.0000 Buried
20 T B -0.6263 Soluble
21 I B 0.0000 Buried
22 N B -1.6666 Soluble
23 C B 0.0000 Buried
24 R B -2.4073 Soluble
25 S B 0.0000 Buried
26 S B -0.9905 Soluble
27 Q B -1.4397 Soluble
28 S B -0.9386 Soluble
29 I B 0.0000 Buried
30 V B 0.2628 Aggregation-prone
31 H B -0.1703 Soluble
32 S B -0.3773 Soluble
34 T B -0.4160 Soluble
35 G B -0.5323 Soluble
36 N B -0.5923 Soluble
37 T B -0.3234 Soluble
38 Y B 0.0000 Buried
39 L B 0.0000 Buried
40 E B 0.0000 Buried
41 W B 0.0000 Buried
42 Y B 0.0000 Buried
43 Q B 0.0000 Buried
44 Q B 0.0000 Buried
45 K B -1.7552 Soluble
46 P B -1.3617 Soluble
47 G B -1.2852 Soluble
48 Q B -1.7171 Soluble
49 P B -1.1845 Soluble
50 P B 0.0000 Buried
51 K B -1.2811 Soluble
52 L B 0.0000 Buried
53 L B 0.0000 Buried
54 I B 0.0000 Buried
55 Y B -0.5881 Soluble
56 K B -1.1861 Soluble
57 V B -0.8733 Soluble
65 S B -1.0827 Soluble
66 N B -1.5112 Soluble
67 R B -1.4509 Soluble
68 F B -0.6509 Soluble
69 S B -0.4692 Soluble
70 G B -0.7851 Soluble
71 V B 0.0000 Buried
72 P B -1.2472 Soluble
74 D B -2.1307 Soluble
75 R B -1.6249 Soluble
76 F B 0.0000 Buried
77 S B -0.9238 Soluble
78 G B 0.0000 Buried
79 S B -0.8808 Soluble
80 G B -1.2236 Soluble
83 S B -0.9085 Soluble
84 G B -0.8554 Soluble
85 T B -1.4865 Soluble
86 D B -2.0448 Soluble
87 F B 0.0000 Buried
88 T B -0.9612 Soluble
89 L B 0.0000 Buried
90 T B -0.6470 Soluble
91 I B 0.0000 Buried
92 S B -1.7886 Soluble
93 S B -1.5540 Soluble
94 L B 0.0000 Buried
95 Q B -1.3584 Soluble
96 A B -0.7883 Soluble
97 E B -1.9530 Soluble
98 D B 0.0000 Buried
99 V B -0.5712 Soluble
100 A B 0.0000 Buried
101 V B 0.0000 Buried
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 F B 0.0000 Buried
106 H B 0.0000 Buried
107 G B 0.0000 Buried
108 T B 0.0000 Buried
109 H B 0.0090 Aggregation-prone
114 V B 0.8102 Aggregation-prone
115 P B 0.2898 Aggregation-prone
116 Y B 0.4173 Aggregation-prone
117 T B 0.2134 Aggregation-prone
118 F B 0.0000 Buried
119 G B 0.0000 Buried
120 G B -1.1283 Soluble
121 G B -1.4650 Soluble
122 T B 0.0000 Buried
123 K B -2.1403 Soluble
124 V B 0.0000 Buried
125 E B 0.0000 Buried
126 I B -0.7441 Soluble
127 K B -1.5752 Soluble
128 R B -1.0483 Soluble
129 T B -0.1709 Soluble
130 V B 0.4832 Aggregation-prone
131 A B 0.0950 Aggregation-prone
132 A B -0.1027 Soluble
133 P B 0.0000 Buried
134 S B -0.3046 Soluble
135 V B 0.0000 Buried
136 F B -0.0732 Soluble
137 I B 0.0000 Buried
138 F B 0.0000 Buried
139 P B -0.6572 Soluble
140 P B 0.0000 Buried
141 S B -1.5914 Soluble
142 D B -2.9674 Soluble
143 E B -3.0365 Soluble
144 Q B 0.0000 Buried
145 L B -2.3295 Soluble
146 K B -2.9169 Soluble
147 S B -1.7887 Soluble
148 G B -1.3048 Soluble
149 T B -1.0580 Soluble
150 A B 0.0000 Buried
151 S B 0.0000 Buried
152 V B 0.0000 Buried
153 V B 0.0000 Buried
154 C B 0.0000 Buried
155 L B 0.0000 Buried
156 L B 0.0000 Buried
157 N B 0.0000 Buried
158 N B -0.7560 Soluble
159 F B 0.0000 Buried
160 Y B 0.0000 Buried
161 P B -1.3910 Soluble
162 R B -2.2157 Soluble
163 E B -2.7972 Soluble
164 A B -2.0817 Soluble
165 K B -2.2543 Soluble
166 V B -0.9575 Soluble
167 Q B -0.3991 Soluble
168 W B 0.0000 Buried
169 K B -0.4221 Soluble
170 V B 0.0000 Buried
171 D B -1.5560 Soluble
172 N B -1.2103 Soluble
173 A B -0.2096 Soluble
174 L B 0.7734 Aggregation-prone
175 Q B -0.0091 Soluble
176 S B -0.4266 Soluble
177 G B -0.8706 Soluble
178 N B -0.8010 Soluble
179 S B -1.0826 Soluble
180 Q B -1.3643 Soluble
181 E B -1.8422 Soluble
182 S B -0.8540 Soluble
183 V B -0.4027 Soluble
184 T B 0.0000 Buried
185 E B -2.0208 Soluble
186 Q B -1.6029 Soluble
187 D B -1.8789 Soluble
188 S B -1.6896 Soluble
189 K B -2.2796 Soluble
190 D B -1.8090 Soluble
191 S B -1.7283 Soluble
192 T B 0.0000 Buried
193 Y B -1.0968 Soluble
194 S B 0.0000 Buried
195 L B 0.0000 Buried
196 S B 0.0000 Buried
197 S B 0.0000 Buried
198 T B -0.6187 Soluble
199 L B 0.0000 Buried
200 T B -0.3100 Soluble
201 L B -0.6205 Soluble
202 S B -1.0431 Soluble
203 K B -2.1522 Soluble
204 A B -1.9140 Soluble
205 D B -2.5338 Soluble
206 Y B 0.0000 Buried
207 E B -3.5049 Soluble
208 K B -3.6476 Soluble
209 H B -3.2397 Soluble
210 K B -3.4634 Soluble
211 V B -1.8328 Soluble
212 Y B 0.0000 Buried
213 A B 0.0000 Buried
214 C B 0.0000 Buried
215 E B -0.5407 Soluble
216 V B 0.0000 Buried
217 T B -1.0666 Soluble
218 H B 0.0000 Buried
219 Q B -1.6503 Soluble
220 G B -0.4131 Soluble
221 L B -0.1333 Soluble
222 S B -0.3916 Soluble
223 S B -0.2836 Soluble
224 P B -0.2766 Soluble
225 V B 0.3418 Aggregation-prone
226 T B -0.2782 Soluble
227 K B -0.7116 Soluble
228 S B -0.7790 Soluble
229 F B 0.0000 Buried
230 N B -2.5573 Soluble
231 R B -3.3291 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
Load structure at specific pH condition
A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6934 2.9677 CSV PDB
4.5 -0.7387 2.9677 CSV PDB
5.0 -0.7916 2.9677 CSV PDB
5.5 -0.8413 2.9677 CSV PDB
6.0 -0.8757 2.9677 CSV PDB
6.5 -0.8857 2.9682 CSV PDB
7.0 -0.8714 3.0114 CSV PDB
7.5 -0.841 3.0621 CSV PDB
8.0 -0.8021 3.1157 CSV PDB
8.5 -0.7568 3.1702 CSV PDB
9.0 -0.705 3.2247 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH