Tomuzotuximab / 5t1k

A4DAB272_5t1k_D_C | Source PDB: 5t1k | Chains: D, C | Done
99.56
Yes
10 Å
Yes
Avg A4D Score
-0.6788
Max Score
1.9953
Min Score
-3.5985
Total Score
-290.54
Score CDR
-0.307
Score non-CDR
-0.7236

Calculation Parameters

Chain Sequence(s) QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKDILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGA input.pdb
Selected Chain(s) D (Heavy), C (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5985
Maximum Score 1.9953
Average Score -0.6788
Total Score -290.5433

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q D -1.5499 Soluble
2 V D -1.0535 Soluble
3 Q D -1.8984 Soluble
4 L D 0.0000 Buried
5 K D -2.0980 Soluble
6 Q D 0.0000 Buried
7 S D -0.7426 Soluble
8 G D -1.0085 Soluble
9 P D -0.5237 Soluble
11 G D -0.4180 Soluble
12 L D -0.0572 Soluble
13 V D -0.7476 Soluble
14 Q D -1.6275 Soluble
15 P D -1.5254 Soluble
16 S D -1.5504 Soluble
17 Q D -1.8273 Soluble
18 S D -1.8273 Soluble
19 L D 0.0000 Buried
20 S D -0.8810 Soluble
21 I D 0.0000 Buried
22 T D -0.5708 Soluble
23 C D 0.0000 Buried
24 T D -1.1014 Soluble
25 V D 0.0000 Buried
26 S D -1.0611 Soluble
27 G D -1.0328 Soluble
28 F D -0.5696 Soluble
29 S D -0.8639 Soluble
30 L D 0.0000 Buried
35 T D -0.9057 Soluble
36 N D -0.8371 Soluble
37 Y D 0.4864 Aggregation-prone
38 G D 0.0000 Buried
39 V D 0.0000 Buried
40 H D 0.0000 Buried
41 W D 0.0000 Buried
42 V D 0.0000 Buried
43 R D 0.0000 Buried
44 Q D -0.5427 Soluble
45 S D -1.0221 Soluble
46 P D -1.1619 Soluble
47 G D -1.7194 Soluble
48 K D -2.2952 Soluble
49 G D -1.2989 Soluble
50 L D 0.0000 Buried
51 E D -0.6114 Soluble
52 W D 0.0000 Buried
53 L D 0.0000 Buried
54 G D 0.0000 Buried
55 V D 0.0000 Buried
56 I D 0.0000 Buried
57 W D -0.5089 Soluble
58 S D -0.6420 Soluble
59 G D -1.2459 Soluble
63 G D -1.5618 Soluble
64 N D -1.8621 Soluble
65 T D -1.2989 Soluble
66 D D -0.9898 Soluble
67 Y D -0.3964 Soluble
68 N D -0.2214 Soluble
69 T D -0.2608 Soluble
70 P D -0.3939 Soluble
71 F D 0.0000 Buried
72 T D -0.4789 Soluble
74 S D -0.6758 Soluble
75 R D -1.2668 Soluble
76 L D 0.0000 Buried
77 S D -1.2859 Soluble
78 I D 0.0000 Buried
79 N D -1.8566 Soluble
80 K D -1.5078 Soluble
81 D D -1.7921 Soluble
82 N D -2.2190 Soluble
83 S D -1.6810 Soluble
84 K D -2.3427 Soluble
85 S D -1.5608 Soluble
86 Q D -1.5139 Soluble
87 V D 0.0000 Buried
88 F D -0.5309 Soluble
89 F D 0.0000 Buried
90 K D -1.9742 Soluble
91 M D 0.0000 Buried
92 N D -2.3105 Soluble
93 S D -1.6824 Soluble
94 L D 0.0000 Buried
95 Q D -2.0851 Soluble
96 S D -1.5139 Soluble
97 N D -2.0375 Soluble
98 D D 0.0000 Buried
99 T D -0.6268 Soluble
100 A D 0.0000 Buried
101 I D 0.4132 Aggregation-prone
102 Y D 0.0000 Buried
103 Y D 0.0000 Buried
104 C D 0.0000 Buried
105 A D 0.0000 Buried
106 R D 0.0000 Buried
107 A D 0.0000 Buried
108 L D 1.0813 Aggregation-prone
109 T D 1.2083 Aggregation-prone
110 Y D 1.8866 Aggregation-prone
111 Y D 1.9953 Aggregation-prone
112 D D 0.0000 Buried
113 Y D 0.6744 Aggregation-prone
114 E D 0.0000 Buried
115 F D 0.0000 Buried
116 A D 0.1977 Aggregation-prone
117 Y D -0.0039 Soluble
118 W D -0.5730 Soluble
119 G D 0.0000 Buried
120 Q D -1.7897 Soluble
121 G D -0.7414 Soluble
122 T D 0.0000 Buried
123 L D 0.1338 Aggregation-prone
124 V D 0.0000 Buried
125 T D -0.3572 Soluble
126 V D 0.0000 Buried
127 S D -0.5596 Soluble
128 A D -0.3631 Soluble
129 A D -0.3149 Soluble
130 S D -0.5546 Soluble
131 T D -0.6390 Soluble
132 K D -1.3157 Soluble
133 G D -1.5309 Soluble
134 P D 0.0000 Buried
135 S D -0.4122 Soluble
136 V D 0.0000 Buried
137 F D 0.0000 Buried
138 P D -1.3288 Soluble
139 L D 0.0000 Buried
140 A D -1.2248 Soluble
141 P D -0.7979 Soluble
142 S D -0.7606 Soluble
143 G D -0.7746 Soluble
144 G D -0.8593 Soluble
145 T D -0.6177 Soluble
146 A D 0.0000 Buried
147 A D 0.0000 Buried
148 L D 0.0000 Buried
149 G D 0.0000 Buried
150 C D 0.0000 Buried
151 L D 0.0000 Buried
152 V D 0.0000 Buried
153 K D 0.0000 Buried
154 D D -0.4311 Soluble
155 Y D 0.0000 Buried
156 F D 0.0000 Buried
157 P D 0.0000 Buried
158 E D -0.5052 Soluble
159 P D -0.7345 Soluble
160 V D -0.8322 Soluble
161 T D -0.7477 Soluble
162 V D -0.3176 Soluble
163 S D -0.4553 Soluble
164 W D 0.0000 Buried
165 N D -0.7743 Soluble
166 S D -0.6565 Soluble
167 G D -0.5728 Soluble
168 A D -0.2361 Soluble
169 L D 0.0143 Aggregation-prone
170 T D -0.1634 Soluble
171 S D -0.1821 Soluble
172 G D -0.2344 Soluble
173 V D 0.1353 Aggregation-prone
174 H D -0.3449 Soluble
175 T D -0.0079 Soluble
176 F D 0.0000 Buried
177 P D -0.2696 Soluble
178 A D 0.2796 Aggregation-prone
179 V D 0.6511 Aggregation-prone
180 L D 1.1740 Aggregation-prone
181 Q D 0.2947 Aggregation-prone
182 S D -0.0593 Soluble
183 S D -0.2322 Soluble
184 G D 0.0045 Aggregation-prone
185 L D 0.1086 Aggregation-prone
186 Y D 0.4066 Aggregation-prone
187 S D 0.0000 Buried
188 L D 0.0000 Buried
189 S D 0.0000 Buried
190 S D 0.0000 Buried
191 V D 0.0000 Buried
192 V D 0.0000 Buried
193 T D -0.1368 Soluble
194 V D 0.0000 Buried
195 P D -0.5425 Soluble
196 S D -0.5699 Soluble
197 S D -0.6003 Soluble
198 S D -0.5847 Soluble
199 L D -0.8542 Soluble
200 G D -0.9854 Soluble
201 T D -0.6949 Soluble
202 Q D -1.1442 Soluble
203 T D -1.1499 Soluble
204 Y D 0.0000 Buried
205 I D -1.2861 Soluble
206 C D 0.0000 Buried
207 N D -1.5472 Soluble
208 V D 0.0000 Buried
209 N D -2.4437 Soluble
210 H D 0.0000 Buried
211 K D -2.9725 Soluble
212 P D -1.7095 Soluble
213 S D -1.9235 Soluble
214 N D -2.7411 Soluble
215 T D -2.2144 Soluble
216 K D -2.8583 Soluble
217 V D -1.5707 Soluble
218 D D -2.3820 Soluble
219 K D -2.0875 Soluble
220 R D -2.5895 Soluble
221 V D 0.0000 Buried
222 E D -2.8524 Soluble
223 P D -1.8871 Soluble
224 K D -2.4372 Soluble
1 D C -1.4760 Soluble
2 I C 0.0000 Buried
3 L C 0.8140 Aggregation-prone
4 L C 0.0732 Aggregation-prone
5 T C 0.0111 Aggregation-prone
6 Q C 0.2527 Aggregation-prone
7 S C 0.3351 Aggregation-prone
8 P C 0.8223 Aggregation-prone
9 V C 1.8306 Aggregation-prone
10 I C 1.2287 Aggregation-prone
11 L C 0.4832 Aggregation-prone
12 S C -0.2186 Soluble
13 V C -1.1614 Soluble
14 S C -1.7436 Soluble
15 P C -2.0264 Soluble
16 G C -2.1073 Soluble
17 E C -2.9578 Soluble
18 R C -3.1656 Soluble
19 V C 0.0000 Buried
20 S C -0.9163 Soluble
21 F C 0.0000 Buried
22 S C -0.5686 Soluble
23 C C 0.0000 Buried
24 R C -1.5026 Soluble
25 A C 0.0000 Buried
26 S C -0.7620 Soluble
27 Q C -1.4355 Soluble
28 S C -1.4418 Soluble
29 I C 0.0000 Buried
36 G C -1.0247 Soluble
37 T C -0.8085 Soluble
38 N C -0.8023 Soluble
39 I C 0.0000 Buried
40 H C 0.0000 Buried
41 W C 0.0000 Buried
42 Y C 0.0000 Buried
43 Q C 0.0000 Buried
44 Q C -1.3429 Soluble
45 R C -1.9551 Soluble
46 T C -1.7393 Soluble
47 N C -1.7946 Soluble
48 G C -1.5528 Soluble
49 S C -1.0504 Soluble
50 P C 0.0000 Buried
51 R C -0.8793 Soluble
52 L C 0.0000 Buried
53 L C 0.0000 Buried
54 I C 0.0000 Buried
55 K C -0.6903 Soluble
56 Y C -0.5574 Soluble
57 A C 0.0000 Buried
65 S C -1.1320 Soluble
66 E C -1.6994 Soluble
67 S C -1.0379 Soluble
68 I C -0.4310 Soluble
69 S C -0.3334 Soluble
70 G C -0.4712 Soluble
71 I C -0.2747 Soluble
72 P C -0.3186 Soluble
74 S C -0.5322 Soluble
75 R C -0.9787 Soluble
76 F C 0.0000 Buried
77 S C -0.8297 Soluble
78 G C -0.7087 Soluble
79 S C -0.8831 Soluble
80 G C -1.0688 Soluble
83 S C -1.0295 Soluble
84 G C -1.2480 Soluble
85 T C -1.7197 Soluble
86 D C -2.4137 Soluble
87 F C 0.0000 Buried
88 T C -0.8130 Soluble
89 L C 0.0000 Buried
90 S C -0.8664 Soluble
91 I C 0.0000 Buried
92 N C -2.1631 Soluble
93 S C -2.1025 Soluble
94 V C 0.0000 Buried
95 E C -2.2152 Soluble
96 S C -2.1062 Soluble
97 E C -2.0237 Soluble
98 D C 0.0000 Buried
99 I C 0.0000 Buried
100 A C 0.0000 Buried
101 D C -0.9034 Soluble
102 Y C 0.0000 Buried
103 Y C 0.0000 Buried
104 C C 0.0000 Buried
105 Q C 0.0000 Buried
106 Q C 0.0000 Buried
107 N C -0.6262 Soluble
108 N C -1.2227 Soluble
109 N C -1.1168 Soluble
114 W C -0.0911 Soluble
115 P C 0.0000 Buried
116 T C 0.0000 Buried
117 T C -0.0590 Soluble
118 F C 0.1845 Aggregation-prone
119 G C 0.2025 Aggregation-prone
120 A C 0.0218 Aggregation-prone
121 G C 0.0608 Aggregation-prone
122 T C 0.0000 Buried
123 K C -0.3228 Soluble
124 L C 0.0000 Buried
125 E C -1.1372 Soluble
126 L C 0.0000 Buried
127 K C -1.5133 Soluble
128 R C -1.0582 Soluble
129 T C 0.1977 Aggregation-prone
130 V C 0.9961 Aggregation-prone
131 A C 0.2873 Aggregation-prone
132 A C 0.0594 Aggregation-prone
133 P C 0.0000 Buried
134 S C -0.2267 Soluble
135 V C 0.0000 Buried
136 F C 0.0967 Aggregation-prone
137 I C 0.0483 Aggregation-prone
138 F C 0.0000 Buried
139 P C -0.5122 Soluble
140 P C -0.7988 Soluble
141 S C -1.8471 Soluble
142 D C -3.0926 Soluble
143 E C -2.8948 Soluble
144 Q C 0.0000 Buried
145 L C -2.2917 Soluble
146 K C -2.7778 Soluble
147 S C -1.7228 Soluble
148 G C -1.1986 Soluble
149 T C -0.8519 Soluble
150 A C 0.0000 Buried
151 S C 0.0000 Buried
152 V C 0.0000 Buried
153 V C 0.0000 Buried
154 C C 0.0000 Buried
155 L C 0.0000 Buried
156 L C 0.0000 Buried
157 N C 0.0000 Buried
158 N C -0.9299 Soluble
159 F C 0.0000 Buried
160 Y C 0.0000 Buried
161 P C -1.5640 Soluble
162 R C -3.0230 Soluble
163 E C -3.2190 Soluble
164 A C -2.2718 Soluble
165 K C -2.2447 Soluble
166 V C -0.9603 Soluble
167 Q C -0.6094 Soluble
168 W C 0.0000 Buried
169 K C -0.6720 Soluble
170 V C 0.0000 Buried
171 D C -1.8692 Soluble
172 N C -1.5608 Soluble
173 A C -0.3526 Soluble
174 L C 0.4676 Aggregation-prone
175 Q C -0.2163 Soluble
176 S C -0.4336 Soluble
177 G C -0.8710 Soluble
178 N C -0.7749 Soluble
179 S C -0.9836 Soluble
180 Q C -1.1171 Soluble
181 E C -1.4209 Soluble
182 S C -0.5891 Soluble
183 V C -0.7306 Soluble
184 T C -1.1509 Soluble
185 E C -2.2800 Soluble
186 Q C 0.0000 Buried
187 D C -2.0150 Soluble
188 S C -2.2236 Soluble
189 K C -2.6023 Soluble
190 D C -1.9454 Soluble
191 S C 0.0000 Buried
192 T C 0.0000 Buried
193 Y C -1.4030 Soluble
194 S C 0.0000 Buried
195 L C 0.0000 Buried
196 S C 0.0000 Buried
197 S C 0.0000 Buried
198 T C -0.5651 Soluble
199 L C 0.0000 Buried
200 T C -0.4045 Soluble
201 L C -0.6410 Soluble
202 S C -1.0076 Soluble
203 K C -2.0008 Soluble
204 A C -1.8374 Soluble
205 D C -2.4650 Soluble
206 Y C 0.0000 Buried
207 E C -3.4755 Soluble
208 K C -3.5985 Soluble
209 H C -3.0825 Soluble
210 K C -3.0071 Soluble
211 V C -1.2699 Soluble
212 Y C 0.0000 Buried
213 A C 0.0000 Buried
214 C C 0.0000 Buried
215 E C -0.9201 Soluble
216 V C 0.0000 Buried
217 T C -1.1609 Soluble
218 H C 0.0000 Buried
219 Q C -1.6153 Soluble
220 G C -0.1931 Soluble
221 L C -0.0946 Soluble
222 S C -0.4359 Soluble
223 S C -0.4375 Soluble
224 P C -0.5768 Soluble
225 V C -0.1551 Soluble
226 T C -0.5814 Soluble
227 K C -0.7718 Soluble
228 S C -0.6004 Soluble
229 F C -0.7083 Soluble
230 N C -1.5609 Soluble
231 R C -2.0554 Soluble
232 G C -1.3478 Soluble
233 A C -0.9149 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
Load structure at specific pH condition
A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.677 2.2115 CSV PDB
4.5 -0.712 2.2115 CSV PDB
5.0 -0.7541 2.2115 CSV PDB
5.5 -0.7945 2.2115 CSV PDB
6.0 -0.8227 2.2115 CSV PDB
6.5 -0.8309 2.2115 CSV PDB
7.0 -0.8191 2.2115 CSV PDB
7.5 -0.7937 2.2113 CSV PDB
8.0 -0.761 2.2108 CSV PDB
8.5 -0.7231 2.209 CSV PDB
9.0 -0.6805 2.2044 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH