Gatralimab / 6obd

A4DAB126_6obd_B_A | Source PDB: 6obd | Chains: B, A | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7281
Max Score
1.2015
Min Score
-3.4395
Total Score
-310.9
Score CDR
—
Score non-CDR
—

Calculation Parameters

Chain Sequence(s) EVQLVESGGGLVQPGGSLRLSCAASGFPFSNYWMNWVRQAPGKGLEWVGQIRLKSNNYATHYAESVKGRFTISRDDSKNSLYLQMNSLKTEDTAVYYCTPIDYWGQGTTVTVSSASTKGPSVFPLAPSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSDIVMTQTPLSLSVTPGQPASISCKSSQSLLYSNGKTYLNWVLQKPGQSPQRLIYLVSKLDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCVQGSHFHTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.4395
Maximum Score 1.2015
Average Score -0.7281
Total Score -310.8958

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 E B -1.6329 Soluble
2 V B -0.2514 Soluble
3 Q B -0.5599 Soluble
4 L B 0.0000 Buried
5 V B 1.2015 Aggregation-prone
6 E B 0.0000 Buried
7 S B -0.4305 Soluble
8 G B -0.9356 Soluble
9 G B -0.6076 Soluble
11 G B -0.2172 Soluble
12 L B 0.1421 Aggregation-prone
13 V B -0.4896 Soluble
14 Q B -1.5286 Soluble
15 P B -1.7423 Soluble
16 G B -1.5437 Soluble
17 G B -1.0979 Soluble
18 S B -1.3568 Soluble
19 L B -1.1474 Soluble
20 R B -2.1588 Soluble
21 L B 0.0000 Buried
22 S B -0.4214 Soluble
23 C B 0.0000 Buried
24 A B -0.1314 Soluble
25 A B 0.0000 Buried
26 S B -0.7655 Soluble
27 G B -0.8295 Soluble
28 F B -0.4555 Soluble
29 P B -0.7621 Soluble
30 F B 0.0000 Buried
35 S B -1.4995 Soluble
36 N B -1.4945 Soluble
37 Y B -0.3845 Soluble
38 W B 0.1744 Aggregation-prone
39 M B 0.0000 Buried
40 N B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.9601 Soluble
45 A B -1.3065 Soluble
46 P B -1.2553 Soluble
47 G B -1.4662 Soluble
48 K B -2.3841 Soluble
49 G B -1.6092 Soluble
50 L B 0.0000 Buried
51 E B -1.2914 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 G B 0.0000 Buried
55 Q B 0.0000 Buried
56 I B 0.0000 Buried
57 R B -0.8846 Soluble
58 L B -1.4372 Soluble
59 K B -2.5795 Soluble
60 S B -1.7612 Soluble
61 N B -1.7177 Soluble
62 N B -2.0201 Soluble
63 Y B -1.0135 Soluble
64 A B -0.7429 Soluble
65 T B -0.3082 Soluble
66 H B -0.7547 Soluble
67 Y B -1.0130 Soluble
68 A B 0.0000 Buried
69 E B -2.7424 Soluble
70 S B -1.8226 Soluble
71 V B 0.0000 Buried
72 K B -2.6996 Soluble
74 G B -1.8252 Soluble
75 R B -1.6055 Soluble
76 F B 0.0000 Buried
77 T B -0.9417 Soluble
78 I B 0.0000 Buried
79 S B -0.3136 Soluble
80 R B -1.0870 Soluble
81 D B -1.7946 Soluble
82 D B -1.9372 Soluble
83 S B -1.5875 Soluble
84 K B -2.4119 Soluble
85 N B -1.8070 Soluble
86 S B 0.0000 Buried
87 L B 0.0000 Buried
88 Y B -0.6148 Soluble
89 L B 0.0000 Buried
90 Q B -1.3553 Soluble
91 M B 0.0000 Buried
92 N B -1.7306 Soluble
93 S B -1.4475 Soluble
94 L B 0.0000 Buried
95 K B -2.5184 Soluble
96 T B -1.9042 Soluble
97 E B -2.3556 Soluble
98 D B 0.0000 Buried
99 T B -0.8513 Soluble
100 A B 0.0000 Buried
101 V B -0.0889 Soluble
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 T B 0.0000 Buried
106 P B 0.0000 Buried
107 I B 0.0000 Buried
116 D B -0.4692 Soluble
117 Y B -0.0289 Soluble
118 W B -0.1981 Soluble
119 G B -0.4048 Soluble
120 Q B -1.1632 Soluble
121 G B -0.2965 Soluble
122 T B -0.2244 Soluble
123 T B -0.3593 Soluble
124 V B 0.0000 Buried
125 T B 0.0000 Buried
126 V B 0.0000 Buried
127 S B -0.9302 Soluble
128 S B -0.6506 Soluble
129 A B -0.4027 Soluble
130 S B -0.5392 Soluble
131 T B -0.8615 Soluble
132 K B -1.1361 Soluble
133 G B -1.3774 Soluble
134 P B 0.0000 Buried
135 S B -0.3592 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.3330 Soluble
139 L B 0.0000 Buried
140 A B -1.2475 Soluble
141 P B 0.0000 Buried
142 S B -0.7763 Soluble
143 G B -0.7802 Soluble
144 G B -0.8596 Soluble
145 T B -0.6345 Soluble
146 A B -0.3343 Soluble
147 A B 0.0000 Buried
148 L B 0.0000 Buried
149 G B 0.0000 Buried
150 C B 0.0000 Buried
151 L B 0.0000 Buried
152 V B 0.0000 Buried
153 K B 0.0000 Buried
154 D B -0.2990 Soluble
155 Y B 0.0000 Buried
156 F B 0.0000 Buried
157 P B 0.0000 Buried
158 E B -0.6108 Soluble
159 P B -0.8538 Soluble
160 V B -0.7257 Soluble
161 T B -0.6325 Soluble
162 V B -0.2203 Soluble
163 S B -0.4206 Soluble
164 W B 0.0000 Buried
165 N B -0.8310 Soluble
166 S B -0.7160 Soluble
167 G B -0.6182 Soluble
168 A B -0.2992 Soluble
169 L B -0.0656 Soluble
170 T B -0.1997 Soluble
171 S B -0.1759 Soluble
172 G B -0.2156 Soluble
173 V B 0.1581 Aggregation-prone
174 H B -0.2960 Soluble
175 T B 0.0131 Aggregation-prone
176 F B 0.0000 Buried
177 P B -0.3131 Soluble
178 A B 0.2186 Aggregation-prone
179 V B 0.5724 Aggregation-prone
180 L B 1.1579 Aggregation-prone
181 Q B 0.3141 Aggregation-prone
182 S B -0.0870 Soluble
183 S B -0.1764 Soluble
184 G B 0.0745 Aggregation-prone
185 L B 0.2197 Aggregation-prone
186 Y B 0.5005 Aggregation-prone
187 S B 0.0000 Buried
188 L B 0.0000 Buried
189 S B 0.0000 Buried
190 S B 0.0000 Buried
191 V B 0.0000 Buried
192 V B 0.0000 Buried
193 T B -0.1141 Soluble
194 V B 0.0000 Buried
195 P B -0.5660 Soluble
196 S B -0.6025 Soluble
197 S B -0.5575 Soluble
198 S B -0.5013 Soluble
199 L B -0.6850 Soluble
200 G B -0.9026 Soluble
201 T B -0.6502 Soluble
202 Q B -0.9017 Soluble
203 T B -1.0596 Soluble
204 Y B 0.0000 Buried
205 I B -1.2943 Soluble
206 C B 0.0000 Buried
207 N B -1.5165 Soluble
208 V B 0.0000 Buried
209 N B -2.0146 Soluble
210 H B 0.0000 Buried
211 K B -2.7674 Soluble
212 P B -1.5937 Soluble
213 S B -1.8322 Soluble
214 N B -2.5743 Soluble
215 T B -2.0975 Soluble
216 K B -2.6586 Soluble
217 V B -1.4345 Soluble
218 D B -2.5961 Soluble
219 K B -2.1281 Soluble
220 K B -2.6484 Soluble
221 V B 0.0000 Buried
222 E B -2.8176 Soluble
223 P B -2.0272 Soluble
224 K B -2.6114 Soluble
225 S B -1.3298 Soluble
1 D A -1.8699 Soluble
2 I A 0.0000 Buried
3 V A 0.7516 Aggregation-prone
4 M A 0.0000 Buried
5 T A -0.5073 Soluble
6 Q A 0.0000 Buried
7 T A -0.0302 Soluble
8 P A 0.2895 Aggregation-prone
9 L A 0.9555 Aggregation-prone
10 S A 0.1703 Aggregation-prone
11 L A -0.0803 Soluble
12 S A -0.7207 Soluble
13 V A 0.0000 Buried
14 T A -1.7233 Soluble
15 P A -2.0682 Soluble
16 G A -2.2091 Soluble
17 Q A -2.5885 Soluble
18 P A -2.1517 Soluble
19 A A 0.0000 Buried
20 S A -0.8528 Soluble
21 I A 0.0000 Buried
22 S A -0.7820 Soluble
23 C A 0.0000 Buried
24 K A -1.8412 Soluble
25 S A 0.0000 Buried
26 S A -0.8885 Soluble
27 Q A -1.5265 Soluble
28 S A -0.6869 Soluble
29 L A 0.0000 Buried
30 L A 0.6201 Aggregation-prone
31 Y A -0.0920 Soluble
32 S A -0.7032 Soluble
34 N A -1.7157 Soluble
35 G A -1.4035 Soluble
36 K A -1.5836 Soluble
37 T A -0.1905 Soluble
38 Y A 0.2812 Aggregation-prone
39 L A 0.0000 Buried
40 N A 0.0000 Buried
41 W A 0.0000 Buried
42 V A 0.0000 Buried
43 L A 0.0000 Buried
44 Q A -1.2250 Soluble
45 K A -1.7728 Soluble
46 P A -1.4077 Soluble
47 G A -1.5596 Soluble
48 Q A -2.1434 Soluble
49 S A -1.6300 Soluble
50 P A 0.0000 Buried
51 Q A -1.6062 Soluble
52 R A -0.7868 Soluble
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A -0.1759 Soluble
56 L A -0.1960 Soluble
57 V A -0.4019 Soluble
65 S A -0.9044 Soluble
66 K A -1.4982 Soluble
67 L A -0.9249 Soluble
68 D A -0.8418 Soluble
69 S A -0.6304 Soluble
70 G A -0.7324 Soluble
71 V A -0.8214 Soluble
72 P A -1.1202 Soluble
74 D A -1.9500 Soluble
75 R A -2.0882 Soluble
76 F A 0.0000 Buried
77 S A -1.4907 Soluble
78 G A 0.0000 Buried
79 S A -1.0721 Soluble
80 G A -1.0958 Soluble
83 S A -0.7963 Soluble
84 G A -0.5640 Soluble
85 T A -1.3397 Soluble
86 D A -2.0004 Soluble
87 F A 0.0000 Buried
88 T A -1.1237 Soluble
89 L A 0.0000 Buried
90 K A -2.1593 Soluble
91 I A 0.0000 Buried
92 S A -2.3689 Soluble
93 R A -3.1957 Soluble
94 V A 0.0000 Buried
95 E A -2.4884 Soluble
96 A A -2.0444 Soluble
97 E A -2.2198 Soluble
98 D A 0.0000 Buried
99 V A -1.1964 Soluble
100 G A 0.0000 Buried
101 V A -0.2895 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 V A 0.0000 Buried
106 Q A 0.0000 Buried
107 G A 0.0551 Aggregation-prone
108 S A 0.0000 Buried
114 H A -1.0015 Soluble
115 F A -0.2164 Soluble
116 H A 0.0000 Buried
117 T A -0.1839 Soluble
118 F A -0.0774 Soluble
119 G A 0.0000 Buried
120 Q A -1.1642 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -0.8161 Soluble
124 L A 0.0000 Buried
125 E A -1.0105 Soluble
126 I A 0.0000 Buried
127 K A -1.4943 Soluble
128 R A -1.0316 Soluble
129 T A 0.0234 Aggregation-prone
130 V A 0.5841 Aggregation-prone
131 A A 0.0887 Aggregation-prone
132 A A -0.0898 Soluble
133 P A 0.0000 Buried
134 S A -0.3342 Soluble
135 V A 0.0000 Buried
136 F A -0.0316 Soluble
137 I A 0.0667 Aggregation-prone
138 F A 0.0000 Buried
139 P A -0.5227 Soluble
140 P A 0.0000 Buried
141 S A 0.0000 Buried
142 D A -2.9943 Soluble
143 E A -2.7255 Soluble
144 Q A 0.0000 Buried
145 L A -2.1052 Soluble
146 K A -2.6621 Soluble
147 S A -1.6662 Soluble
148 G A -1.0247 Soluble
149 T A -0.8463 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A -0.3739 Soluble
158 N A -0.8664 Soluble
159 F A 0.0000 Buried
160 Y A 0.0000 Buried
161 P A -1.4964 Soluble
162 R A -2.6028 Soluble
163 E A -2.8712 Soluble
164 A A -1.8892 Soluble
165 K A -1.5537 Soluble
166 V A -0.7231 Soluble
167 Q A -0.3703 Soluble
168 W A 0.0000 Buried
169 K A -0.4259 Soluble
170 V A 0.0000 Buried
171 D A -1.3041 Soluble
172 N A -1.2478 Soluble
173 A A -0.0848 Soluble
174 L A 0.8134 Aggregation-prone
175 Q A -0.0842 Soluble
176 S A -0.4681 Soluble
177 G A -0.9039 Soluble
178 N A -0.8429 Soluble
179 S A -0.9940 Soluble
180 Q A -1.1697 Soluble
181 E A -1.3096 Soluble
182 S A -0.5477 Soluble
183 V A -0.6376 Soluble
184 T A -1.1414 Soluble
185 E A -2.2452 Soluble
186 Q A 0.0000 Buried
187 D A -2.0866 Soluble
188 S A -2.1059 Soluble
189 K A -2.3705 Soluble
190 D A -1.9412 Soluble
191 S A -1.8031 Soluble
192 T A 0.0000 Buried
193 Y A -1.3240 Soluble
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.5229 Soluble
199 L A 0.0000 Buried
200 T A -0.3196 Soluble
201 L A -0.6300 Soluble
202 S A -1.0298 Soluble
203 K A -1.9282 Soluble
204 A A -1.8588 Soluble
205 D A -2.5932 Soluble
206 Y A 0.0000 Buried
207 E A -3.1773 Soluble
208 K A -3.4395 Soluble
209 H A -2.8972 Soluble
210 K A -3.0105 Soluble
211 V A -1.3481 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -0.6803 Soluble
216 V A 0.0000 Buried
217 T A -0.8641 Soluble
218 H A 0.0000 Buried
219 Q A -1.5834 Soluble
220 G A -0.3653 Soluble
221 L A -0.2049 Soluble
222 S A -0.4216 Soluble
223 S A -0.3817 Soluble
224 P A -0.3441 Soluble
225 V A 0.1256 Aggregation-prone
226 T A -0.4564 Soluble
227 K A -0.8204 Soluble
228 S A -0.6736 Soluble
229 F A -0.9190 Soluble
230 N A -2.1049 Soluble
231 R A -2.4761 Soluble
232 G A -1.5577 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7951 1.799 CSV PDB
4.5 -0.8362 1.7505 CSV PDB
5.0 -0.8824 1.6781 CSV PDB
5.5 -0.9234 1.6242 CSV PDB
6.0 -0.947 1.5794 CSV PDB
6.5 -0.9433 1.5453 CSV PDB
7.0 -0.9134 1.5247 CSV PDB
7.5 -0.8672 1.5149 CSV PDB
8.0 -0.8123 1.5113 CSV PDB
8.5 -0.7509 1.5837 CSV PDB
9.0 -0.6838 1.664 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH