Anbenitamab / 5tdo

A4DAB016_5tdo_B_A | Source PDB: 5tdo | Chains: B, A | Done
98.68
Yes
10 Å
Yes
Avg A4D Score
-0.6747
Max Score
2.1276
Min Score
-3.3855
Total Score
-286.76
Score CDR
-0.4406
Score non-CDR
-0.7324

Calculation Parameters

Chain Sequence(s) VQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRKAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLESVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQEKPGKAPKLLIYSASFLESGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPVFIFPPSDEQLKSGTASVKCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.3855
Maximum Score 2.1276
Average Score -0.6747
Total Score -286.7557

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 0.5705 Aggregation-prone
3 Q B -0.4424 Soluble
4 L B 0.0000 Buried
5 V B 0.3352 Aggregation-prone
6 E B 0.0000 Buried
7 S B -0.3581 Soluble
8 G B -0.7916 Soluble
9 G B -0.2068 Soluble
11 G B 0.2970 Aggregation-prone
12 L B 0.2839 Aggregation-prone
13 V B -0.5261 Soluble
14 Q B -1.5777 Soluble
15 P B -1.8211 Soluble
16 G B -1.5352 Soluble
17 G B -1.1709 Soluble
18 S B -1.1229 Soluble
19 L B -1.1509 Soluble
20 R B -2.1238 Soluble
21 L B 0.0000 Buried
22 S B -0.4791 Soluble
23 C B 0.0000 Buried
24 A B -0.2537 Soluble
25 A B -0.5057 Soluble
26 S B -0.4425 Soluble
27 G B -0.3529 Soluble
28 F B -0.7572 Soluble
29 N B -1.8925 Soluble
30 I B 0.0000 Buried
35 K B -2.7629 Soluble
36 D B -2.5543 Soluble
37 T B 0.0000 Buried
38 Y B -0.0482 Soluble
39 I B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 K B -0.8535 Soluble
45 A B -1.2038 Soluble
46 P B -1.1898 Soluble
47 G B -1.4884 Soluble
48 K B -2.4298 Soluble
49 G B -1.6726 Soluble
50 L B 0.0000 Buried
51 E B -1.1472 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 A B 0.0000 Buried
55 R B -0.5885 Soluble
56 I B 0.0000 Buried
57 Y B -0.3845 Soluble
58 P B 0.0000 Buried
59 T B -1.3357 Soluble
62 N B -1.1694 Soluble
63 G B -0.4722 Soluble
64 Y B 0.4420 Aggregation-prone
65 T B -0.4888 Soluble
66 R B -2.0347 Soluble
67 Y B -1.9025 Soluble
68 A B -1.9097 Soluble
69 D B -2.6982 Soluble
70 S B -1.7679 Soluble
71 V B 0.0000 Buried
72 K B -2.8993 Soluble
74 G B -1.7833 Soluble
75 R B -1.3971 Soluble
76 F B 0.0000 Buried
77 T B -1.1464 Soluble
78 I B 0.0000 Buried
79 S B -0.1459 Soluble
80 A B -0.9150 Soluble
81 D B -1.4465 Soluble
82 T B -1.7893 Soluble
83 S B -1.5362 Soluble
84 K B -2.1645 Soluble
85 N B -1.6757 Soluble
86 T B -0.8925 Soluble
87 A B 0.0000 Buried
88 Y B -0.5469 Soluble
89 L B 0.0000 Buried
90 Q B -1.3267 Soluble
91 M B 0.0000 Buried
92 N B -1.4442 Soluble
93 S B -1.3980 Soluble
94 L B 0.0000 Buried
95 R B -2.8701 Soluble
96 A B -1.9888 Soluble
97 E B -2.4893 Soluble
98 D B 0.0000 Buried
99 T B -0.7013 Soluble
100 A B 0.0000 Buried
101 V B 0.4089 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 S B 0.0000 Buried
106 R B -0.0860 Soluble
107 W B 0.1827 Aggregation-prone
108 A B 0.1839 Aggregation-prone
115 M B 0.0000 Buried
116 D B -0.1697 Soluble
117 Y B 0.2304 Aggregation-prone
118 W B 0.0000 Buried
119 G B 0.0000 Buried
120 Q B -1.3953 Soluble
121 G B -0.3815 Soluble
122 T B 0.3485 Aggregation-prone
123 L B 1.0149 Aggregation-prone
124 V B 0.0000 Buried
125 T B -0.2491 Soluble
126 V B 0.0000 Buried
127 S B -0.9686 Soluble
128 S B -0.6404 Soluble
129 A B -0.4763 Soluble
130 S B -0.6303 Soluble
131 T B -0.8670 Soluble
132 K B -1.4517 Soluble
133 G B -1.5560 Soluble
134 P B -0.7487 Soluble
135 S B -0.5052 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B 0.0000 Buried
139 L B 0.0000 Buried
140 A B -0.8073 Soluble
141 P B 0.0000 Buried
142 S B -0.7197 Soluble
143 S B -1.2497 Soluble
144 K B -1.8122 Soluble
145 S B -1.1842 Soluble
146 T B -0.9226 Soluble
147 S B -0.8877 Soluble
148 G B -0.7995 Soluble
149 G B -0.6207 Soluble
150 T B -0.4261 Soluble
151 A B 0.0000 Buried
152 A B 0.0000 Buried
153 L B 0.0000 Buried
154 G B 0.0000 Buried
155 C B 0.0000 Buried
156 L B 0.0000 Buried
157 V B 0.0000 Buried
158 K B -0.3521 Soluble
159 D B -0.5275 Soluble
160 Y B 0.0000 Buried
161 F B 0.0000 Buried
162 P B 0.0000 Buried
163 E B -0.5479 Soluble
164 P B -0.7974 Soluble
165 V B -0.7807 Soluble
166 T B -0.6375 Soluble
167 V B -0.3823 Soluble
168 S B -0.4214 Soluble
169 W B 0.0000 Buried
170 N B -0.7872 Soluble
171 S B -0.6998 Soluble
172 G B -0.5210 Soluble
173 A B -0.2513 Soluble
174 L B -0.0113 Soluble
175 T B -0.1873 Soluble
176 S B -0.2019 Soluble
177 G B -0.3207 Soluble
178 V B 0.1464 Aggregation-prone
179 H B -0.3017 Soluble
180 T B 0.0291 Aggregation-prone
181 F B 0.0000 Buried
182 P B -0.2404 Soluble
183 A B 0.2138 Aggregation-prone
184 V B 0.5204 Aggregation-prone
185 L B 1.2508 Aggregation-prone
186 Q B 0.2771 Aggregation-prone
187 S B -0.0774 Soluble
188 S B -0.2235 Soluble
189 G B 0.0120 Aggregation-prone
190 L B 0.0463 Aggregation-prone
191 Y B 0.3213 Aggregation-prone
192 S B 0.0000 Buried
193 L B 0.0000 Buried
194 E B 0.0000 Buried
195 S B 0.0000 Buried
196 V B 0.0000 Buried
197 V B 0.0000 Buried
198 T B -0.1439 Soluble
199 V B 0.0000 Buried
200 P B -0.4643 Soluble
201 S B -0.5617 Soluble
202 S B -0.7268 Soluble
203 S B 0.0000 Buried
204 L B -0.8940 Soluble
205 G B -1.0721 Soluble
206 T B -0.8559 Soluble
207 Q B -1.4740 Soluble
208 T B -1.2643 Soluble
209 Y B 0.0000 Buried
210 I B -1.2045 Soluble
211 C B 0.0000 Buried
212 N B -1.4931 Soluble
213 V B 0.0000 Buried
214 N B -1.9800 Soluble
215 H B 0.0000 Buried
216 K B -2.7848 Soluble
217 P B -1.6361 Soluble
218 S B -1.8951 Soluble
219 N B -2.6203 Soluble
220 T B -2.1223 Soluble
221 K B -2.6578 Soluble
222 V B -1.5766 Soluble
223 D B -2.4797 Soluble
224 K B -1.9108 Soluble
225 K B -2.3216 Soluble
226 V B 0.0000 Buried
227 E B -2.4583 Soluble
228 P B -1.3168 Soluble
2 I A -0.6904 Soluble
3 Q A -1.6873 Soluble
4 M A 0.0000 Buried
5 T A -1.3949 Soluble
6 Q A 0.0000 Buried
7 S A -0.8050 Soluble
8 P A -0.6066 Soluble
9 S A -0.7795 Soluble
10 S A -0.5389 Soluble
11 L A -0.2802 Soluble
12 S A -0.5254 Soluble
13 A A 0.0000 Buried
14 S A -0.3106 Soluble
15 V A 0.4813 Aggregation-prone
16 G A -0.5690 Soluble
17 D A -1.4110 Soluble
18 R A -2.1711 Soluble
19 V A 0.0000 Buried
20 T A -0.6041 Soluble
21 I A 0.0000 Buried
22 T A -0.7437 Soluble
23 C A 0.0000 Buried
24 R A -2.7174 Soluble
25 A A 0.0000 Buried
26 S A -1.9438 Soluble
27 Q A -2.7726 Soluble
28 D A -2.8718 Soluble
29 V A 0.0000 Buried
36 N A -1.9124 Soluble
37 T A -0.8953 Soluble
38 A A -0.1123 Soluble
39 V A 0.0000 Buried
40 A A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 E A -1.3472 Soluble
45 K A -1.5368 Soluble
46 P A -1.4809 Soluble
47 G A -1.6988 Soluble
48 K A -2.6445 Soluble
49 A A -1.6825 Soluble
50 P A 0.0000 Buried
51 K A -1.7304 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A 1.1396 Aggregation-prone
56 S A 0.6285 Aggregation-prone
57 A A 0.0000 Buried
65 S A 0.7212 Aggregation-prone
66 F A 2.1276 Aggregation-prone
67 L A 1.1671 Aggregation-prone
68 E A -0.0090 Soluble
69 S A -0.2993 Soluble
70 G A -0.6432 Soluble
71 V A 0.0000 Buried
72 P A -0.4381 Soluble
74 S A -0.4735 Soluble
75 R A -0.7046 Soluble
76 F A 0.0000 Buried
77 S A 0.0378 Aggregation-prone
78 G A 0.1212 Aggregation-prone
79 S A -0.5394 Soluble
80 R A -1.3118 Soluble
83 S A -1.0759 Soluble
84 G A -1.8041 Soluble
85 T A -2.1865 Soluble
86 D A -1.8928 Soluble
87 F A 0.0000 Buried
88 T A -0.7145 Soluble
89 L A 0.0000 Buried
90 T A -0.6045 Soluble
91 I A 0.0000 Buried
92 S A -1.2475 Soluble
93 S A -1.0036 Soluble
94 L A 0.0000 Buried
95 Q A -0.7783 Soluble
96 P A -0.8685 Soluble
97 E A -1.7791 Soluble
98 D A 0.0000 Buried
99 F A -0.4030 Soluble
100 A A 0.0000 Buried
101 T A -0.6988 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 H A 0.3556 Aggregation-prone
108 Y A 0.7176 Aggregation-prone
109 T A 0.5552 Aggregation-prone
114 T A -0.1940 Soluble
115 P A -0.6019 Soluble
116 P A 0.0000 Buried
117 T A -0.3736 Soluble
118 F A -0.5312 Soluble
119 G A 0.0000 Buried
120 Q A -1.7787 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -1.0702 Soluble
124 V A 0.0000 Buried
125 E A 0.0000 Buried
126 I A -0.3063 Soluble
127 K A -1.0134 Soluble
128 R A -0.9669 Soluble
129 T A -0.0806 Soluble
130 V A 0.4436 Aggregation-prone
131 A A 0.0898 Aggregation-prone
132 A A -0.0603 Soluble
133 P A -0.0304 Soluble
135 V A 0.0990 Aggregation-prone
136 F A 0.1139 Aggregation-prone
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.7583 Soluble
140 P A 0.0000 Buried
141 S A -1.5117 Soluble
142 D A -2.8472 Soluble
143 E A -2.5810 Soluble
144 Q A 0.0000 Buried
145 L A -2.0428 Soluble
146 K A -2.7946 Soluble
147 S A -1.7948 Soluble
148 G A -1.5388 Soluble
149 T A -1.1132 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 K A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A -0.2722 Soluble
158 N A -0.7431 Soluble
159 F A 0.0000 Buried
160 Y A -0.8112 Soluble
161 P A -1.2528 Soluble
162 R A -2.1793 Soluble
163 E A -2.8100 Soluble
164 A A -2.1334 Soluble
165 K A -2.3597 Soluble
166 V A -1.0914 Soluble
167 Q A -0.5712 Soluble
168 W A 0.0000 Buried
169 K A -0.4745 Soluble
170 V A 0.0000 Buried
171 D A -1.7779 Soluble
172 N A -1.4427 Soluble
173 A A -0.2121 Soluble
174 L A 0.8159 Aggregation-prone
175 Q A -0.0303 Soluble
176 S A -0.3496 Soluble
177 G A -0.8734 Soluble
178 N A -0.7604 Soluble
179 S A -0.9973 Soluble
180 Q A -1.2430 Soluble
181 E A -1.6180 Soluble
182 S A 0.0000 Buried
183 V A -0.4270 Soluble
184 T A -0.9996 Soluble
185 E A -2.1080 Soluble
186 Q A -1.6739 Soluble
187 D A -2.0001 Soluble
188 S A -1.6989 Soluble
189 K A -2.2544 Soluble
190 D A -1.6851 Soluble
191 S A -1.6395 Soluble
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.5933 Soluble
199 L A 0.0000 Buried
200 T A -0.4283 Soluble
201 L A -0.5323 Soluble
202 S A -1.0101 Soluble
203 K A -1.9586 Soluble
204 A A -1.7218 Soluble
205 D A -2.2829 Soluble
206 Y A 0.0000 Buried
207 E A -3.1859 Soluble
208 K A -3.3855 Soluble
209 H A -2.7242 Soluble
210 K A -2.8578 Soluble
211 V A -1.1350 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -0.8833 Soluble
216 V A 0.0000 Buried
217 T A -1.1842 Soluble
218 H A 0.0000 Buried
219 Q A -1.6350 Soluble
220 G A -0.4241 Soluble
221 L A -0.2279 Soluble
222 S A -0.4333 Soluble
223 S A -0.3896 Soluble
224 P A -0.5032 Soluble
225 V A 0.0869 Aggregation-prone
226 T A -0.4838 Soluble
227 K A -0.8120 Soluble
228 S A -0.5944 Soluble
229 F A -1.0693 Soluble
230 N A -1.7021 Soluble
231 R A -2.1911 Soluble
232 G A -2.0487 Soluble
233 E A -2.1496 Soluble
234 C A -0.6937 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
Load structure at specific pH condition
A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7175 3.8014 CSV PDB
4.5 -0.7597 3.7935 CSV PDB
5.0 -0.8063 3.7784 CSV PDB
5.5 -0.8484 3.7573 CSV PDB
6.0 -0.8755 3.7336 CSV PDB
6.5 -0.8792 3.7111 CSV PDB
7.0 -0.86 3.6933 CSV PDB
7.5 -0.8258 3.6829 CSV PDB
8.0 -0.7831 3.6782 CSV PDB
8.5 -0.7338 3.6763 CSV PDB
9.0 -0.6783 3.6752 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH