Paridiprubart / 4r7d

A4DAB203_4r7d_M_N | Source PDB: 4r7d | Chains: M, N | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6657
Max Score
1.7502
Min Score
-3.9803
Total Score
-274.28
Score CDR
-0.2048
Score non-CDR
-0.7222

Calculation Parameters

Chain Sequence(s) QVQLQESGPGLVKPSDTLSLTCAVSGYSITGGYSWHWIRQPPGKGLEWMGYIHYSGYTDFNPSLKTRITISRDTSKNQFSLKLSSVTAVDTAVYYCARKDPSDAFPYWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTTYICNVNHKPSNTKVDKRVEPIVLTQSPDFQSVTPKEKVTITCRASQSISDHLHWYQQKPDQSPKLLIKYASHAISGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQGHSFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) M (Heavy), N (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.9803
Maximum Score 1.7502
Average Score -0.6657
Total Score -274.2817

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q M -1.4331 Soluble
2 V M -0.8161 Soluble
3 Q M -1.6125 Soluble
4 L M 0.0000 Buried
5 Q M -1.8571 Soluble
6 E M 0.0000 Buried
7 S M -0.9109 Soluble
8 G M -0.6175 Soluble
9 P M -0.5841 Soluble
11 G M -0.4477 Soluble
12 L M -0.3820 Soluble
13 V M 0.0000 Buried
14 K M -2.1647 Soluble
15 P M -1.4473 Soluble
16 S M -1.2758 Soluble
17 D M -1.6631 Soluble
18 T M -1.2372 Soluble
19 L M 0.0000 Buried
20 S M -0.7341 Soluble
21 L M 0.0000 Buried
22 T M -0.8187 Soluble
23 C M 0.0000 Buried
24 A M -1.2532 Soluble
25 V M 0.0000 Buried
26 S M -1.1549 Soluble
27 G M -0.9004 Soluble
28 Y M -0.2982 Soluble
29 S M -0.3419 Soluble
30 I M 0.0000 Buried
31 T M -0.0918 Soluble
35 G M -0.2702 Soluble
36 G M 0.1039 Aggregation-prone
37 Y M 0.2609 Aggregation-prone
38 S M 0.0000 Buried
39 W M 0.0000 Buried
40 H M 0.0000 Buried
41 W M 0.0000 Buried
42 I M 0.0000 Buried
43 R M 0.0000 Buried
44 Q M -0.7176 Soluble
45 P M -0.5224 Soluble
46 P M -0.7722 Soluble
47 G M -1.4714 Soluble
48 K M -2.2469 Soluble
49 G M -1.4076 Soluble
50 L M 0.0000 Buried
51 E M -0.7285 Soluble
52 W M 0.0000 Buried
53 M M 0.0000 Buried
54 G M 0.0000 Buried
55 Y M 0.1224 Aggregation-prone
56 I M 0.0000 Buried
57 H M 0.3232 Aggregation-prone
58 Y M 0.5302 Aggregation-prone
59 S M 0.2220 Aggregation-prone
63 G M 0.3198 Aggregation-prone
64 Y M 1.0239 Aggregation-prone
65 T M 0.2844 Aggregation-prone
66 D M -0.3877 Soluble
67 F M -0.4456 Soluble
68 N M -0.5607 Soluble
69 P M -0.8457 Soluble
70 S M -0.7006 Soluble
71 L M 0.0000 Buried
72 K M -1.3678 Soluble
74 T M -0.8249 Soluble
75 R M -0.9560 Soluble
76 I M 0.0000 Buried
77 T M -0.8172 Soluble
78 I M 0.0000 Buried
79 S M -0.6914 Soluble
80 R M -1.3377 Soluble
81 D M -1.7892 Soluble
82 T M -1.3940 Soluble
83 S M -1.5227 Soluble
84 K M -2.3365 Soluble
85 N M -1.6383 Soluble
86 Q M -1.6125 Soluble
87 F M 0.0000 Buried
88 S M -0.7807 Soluble
89 L M 0.0000 Buried
90 K M -1.3089 Soluble
91 L M 0.0000 Buried
92 S M -0.9069 Soluble
93 S M -0.9383 Soluble
94 V M 0.0000 Buried
95 T M -0.0223 Soluble
96 A M 0.5879 Aggregation-prone
97 V M 1.7502 Aggregation-prone
98 D M 0.0000 Buried
99 T M 0.6602 Aggregation-prone
100 A M 0.0000 Buried
101 V M 0.0359 Aggregation-prone
102 Y M 0.0000 Buried
103 Y M 0.0000 Buried
104 C M 0.0000 Buried
105 A M 0.0000 Buried
106 R M 0.0000 Buried
107 K M -0.2954 Soluble
108 D M -0.5289 Soluble
109 P M -0.5113 Soluble
110 S M -0.7265 Soluble
113 D M -0.7015 Soluble
114 A M 0.0000 Buried
115 F M 0.0000 Buried
116 P M -0.2507 Soluble
117 Y M -0.0555 Soluble
118 W M -0.6483 Soluble
119 G M 0.0000 Buried
120 Q M -2.0156 Soluble
121 G M -1.1770 Soluble
122 T M -0.4007 Soluble
123 L M 0.2097 Aggregation-prone
124 V M 0.0000 Buried
125 T M -0.0041 Soluble
126 V M 0.0000 Buried
127 S M -0.7251 Soluble
128 S M -0.9275 Soluble
129 A M -0.5353 Soluble
130 S M -0.6222 Soluble
131 T M -0.5799 Soluble
132 K M -1.0698 Soluble
133 G M -1.2897 Soluble
134 P M -0.5316 Soluble
135 S M -0.2526 Soluble
136 V M 0.0000 Buried
137 F M 0.0000 Buried
138 P M -1.1111 Soluble
139 L M 0.0000 Buried
140 A M -0.8967 Soluble
141 P M -0.6484 Soluble
142 T M -0.0778 Soluble
143 A M -0.0175 Soluble
144 A M 0.0000 Buried
145 L M 0.0000 Buried
146 G M 0.0000 Buried
147 C M 0.0000 Buried
148 L M 0.0000 Buried
149 V M 0.0000 Buried
150 K M 0.0000 Buried
151 D M -0.2723 Soluble
152 Y M 0.0000 Buried
153 F M 0.0000 Buried
154 P M 0.0000 Buried
155 E M -0.2996 Soluble
156 P M -0.5839 Soluble
157 V M -0.4208 Soluble
158 T M -0.4192 Soluble
159 V M 0.0000 Buried
160 S M -0.5523 Soluble
161 W M 0.0000 Buried
162 N M -0.6556 Soluble
163 S M -0.7150 Soluble
164 G M -0.6687 Soluble
165 A M -0.2977 Soluble
166 L M 0.0739 Aggregation-prone
167 T M -0.1546 Soluble
168 S M -0.1258 Soluble
169 G M -0.1103 Soluble
170 V M 0.1851 Aggregation-prone
171 H M -0.3842 Soluble
172 T M -0.1614 Soluble
173 F M 0.0000 Buried
174 P M -0.2005 Soluble
175 A M 0.3632 Aggregation-prone
176 V M 0.7507 Aggregation-prone
177 L M 1.4973 Aggregation-prone
178 Q M 0.4294 Aggregation-prone
179 S M -0.0519 Soluble
180 S M -0.1787 Soluble
181 G M 0.1457 Aggregation-prone
182 L M 0.2721 Aggregation-prone
183 Y M 0.6208 Aggregation-prone
184 S M 0.0000 Buried
185 L M 0.0000 Buried
186 S M 0.0000 Buried
187 S M 0.0000 Buried
188 V M 0.0000 Buried
189 V M 0.0000 Buried
190 T M -0.0842 Soluble
191 T M -0.2003 Soluble
192 Y M -0.1741 Soluble
193 I M -0.7166 Soluble
194 C M 0.0000 Buried
195 N M -1.4480 Soluble
196 V M 0.0000 Buried
197 N M -1.7940 Soluble
198 H M 0.0000 Buried
199 K M -2.4789 Soluble
200 P M -1.5138 Soluble
201 S M -1.7677 Soluble
202 N M -2.2499 Soluble
203 T M -1.9668 Soluble
204 K M -2.6199 Soluble
205 V M -1.6525 Soluble
206 D M -2.4190 Soluble
207 K M -1.7029 Soluble
208 R M -1.9240 Soluble
209 V M 0.0000 Buried
210 E M -2.1860 Soluble
211 P M -1.1968 Soluble
2 I N 1.0833 Aggregation-prone
3 V N 1.4474 Aggregation-prone
4 L N 0.0000 Buried
5 T N -0.8954 Soluble
6 Q N -1.2264 Soluble
7 S N -1.0843 Soluble
8 P N -0.9364 Soluble
9 D N -1.6189 Soluble
10 F N -0.0183 Soluble
11 Q N -0.5872 Soluble
12 S N -0.7886 Soluble
13 V N 0.0000 Buried
14 T N -2.2810 Soluble
15 P N -2.5583 Soluble
16 K N -3.5865 Soluble
17 E N -3.9803 Soluble
18 K N -3.6800 Soluble
19 V N 0.0000 Buried
20 T N -0.7483 Soluble
21 I N 0.0000 Buried
22 T N -0.8247 Soluble
23 C N 0.0000 Buried
24 R N -2.1908 Soluble
25 A N 0.0000 Buried
26 S N -0.5854 Soluble
27 Q N -1.3580 Soluble
28 S N -1.4649 Soluble
29 I N 0.0000 Buried
36 S N -1.3870 Soluble
37 D N -1.8124 Soluble
38 H N -1.2312 Soluble
39 L N 0.0000 Buried
40 H N 0.0000 Buried
41 W N 0.0000 Buried
42 Y N 0.0000 Buried
43 Q N -1.0526 Soluble
44 Q N -1.7625 Soluble
45 K N -2.6701 Soluble
46 P N -2.1329 Soluble
47 D N -2.6527 Soluble
48 Q N -2.5977 Soluble
49 S N -1.6624 Soluble
50 P N 0.0000 Buried
51 K N -1.6509 Soluble
52 L N 0.0000 Buried
53 L N 0.0000 Buried
54 I N 0.0000 Buried
55 K N -0.7627 Soluble
56 Y N -0.6624 Soluble
57 A N 0.0000 Buried
65 S N -1.0002 Soluble
66 H N -0.9630 Soluble
67 A N -0.3851 Soluble
68 I N -0.0516 Soluble
69 S N -0.2292 Soluble
70 G N -0.3679 Soluble
71 V N -0.1996 Soluble
72 P N -0.3374 Soluble
74 S N -0.7137 Soluble
75 R N -1.3487 Soluble
76 F N 0.0000 Buried
77 S N -0.8553 Soluble
78 G N -0.5529 Soluble
79 S N -0.8414 Soluble
80 G N -0.9557 Soluble
83 S N -1.1465 Soluble
84 G N -1.4749 Soluble
85 T N -1.8287 Soluble
86 D N -2.0351 Soluble
87 F N 0.0000 Buried
88 T N -0.7293 Soluble
89 L N 0.0000 Buried
90 T N -0.9765 Soluble
91 I N 0.0000 Buried
92 N N -3.0124 Soluble
93 S N -3.0593 Soluble
94 L N 0.0000 Buried
95 E N -2.9485 Soluble
96 A N -2.7376 Soluble
97 E N -2.9501 Soluble
98 D N 0.0000 Buried
99 A N -1.8337 Soluble
100 A N 0.0000 Buried
101 T N 0.0000 Buried
102 Y N 0.0000 Buried
103 Y N 0.0000 Buried
104 C N 0.0000 Buried
105 Q N 0.0000 Buried
106 Q N 0.0000 Buried
107 G N 0.0000 Buried
108 H N -0.6661 Soluble
109 S N 0.2932 Aggregation-prone
114 F N 1.0442 Aggregation-prone
115 P N 0.5024 Aggregation-prone
116 L N 0.0000 Buried
117 T N 0.4303 Aggregation-prone
118 F N 0.0000 Buried
119 G N -0.3260 Soluble
120 G N -1.2165 Soluble
121 G N 0.0000 Buried
122 T N 0.0000 Buried
123 K N -1.5586 Soluble
124 V N 0.0000 Buried
125 E N -1.0251 Soluble
126 I N 0.0000 Buried
127 K N -1.8325 Soluble
128 R N -1.2577 Soluble
129 T N -0.0285 Soluble
130 V N 0.7826 Aggregation-prone
131 A N 0.2108 Aggregation-prone
132 A N -0.1038 Soluble
133 P N 0.0000 Buried
134 S N -0.1199 Soluble
135 V N 0.0000 Buried
136 F N 0.1130 Aggregation-prone
137 I N 0.0613 Aggregation-prone
138 F N 0.0000 Buried
139 P N -0.7303 Soluble
140 P N -0.8552 Soluble
141 S N -1.5969 Soluble
142 D N -2.9071 Soluble
143 E N -2.9291 Soluble
144 Q N 0.0000 Buried
145 L N -1.9786 Soluble
146 K N -2.7631 Soluble
147 S N -1.7146 Soluble
148 G N -1.1997 Soluble
149 T N -1.1810 Soluble
150 A N 0.0000 Buried
151 S N 0.0000 Buried
152 V N 0.0000 Buried
153 V N 0.0000 Buried
154 C N 0.0000 Buried
155 L N 0.0000 Buried
156 L N 0.0000 Buried
157 N N 0.0000 Buried
158 N N -0.9614 Soluble
159 F N 0.0000 Buried
160 Y N 0.0000 Buried
161 P N -1.3313 Soluble
162 R N -2.0924 Soluble
163 E N -2.8587 Soluble
164 A N -2.1071 Soluble
165 K N -2.2989 Soluble
166 V N -0.9571 Soluble
167 Q N -0.5126 Soluble
168 W N 0.0000 Buried
169 K N -0.5751 Soluble
170 V N 0.0000 Buried
171 D N -1.8047 Soluble
172 N N -1.2819 Soluble
173 A N -0.2234 Soluble
174 L N 0.7368 Aggregation-prone
175 Q N -0.0834 Soluble
176 S N -0.4328 Soluble
177 G N -0.8149 Soluble
178 N N -0.6613 Soluble
179 S N -0.8088 Soluble
180 Q N -0.9120 Soluble
181 E N -1.3540 Soluble
182 S N 0.0000 Buried
183 V N -0.3313 Soluble
184 T N -0.9091 Soluble
185 E N -2.0930 Soluble
186 Q N 0.0000 Buried
187 D N -2.4186 Soluble
188 S N -2.7558 Soluble
189 K N -3.0687 Soluble
190 D N -2.5807 Soluble
191 S N 0.0000 Buried
192 T N 0.0000 Buried
193 Y N 0.0000 Buried
194 S N 0.0000 Buried
195 L N 0.0000 Buried
196 S N 0.0000 Buried
197 S N 0.0000 Buried
198 T N 0.0000 Buried
199 L N 0.0000 Buried
200 T N -0.2089 Soluble
201 L N -0.6657 Soluble
202 S N -1.1416 Soluble
203 K N -1.9680 Soluble
204 A N -1.8689 Soluble
205 D N -2.7437 Soluble
206 Y N 0.0000 Buried
207 E N -3.7330 Soluble
208 K N -3.6950 Soluble
209 H N -3.1514 Soluble
210 K N -3.1989 Soluble
211 V N -1.8893 Soluble
212 Y N 0.0000 Buried
213 A N 0.0000 Buried
214 C N 0.0000 Buried
215 E N -0.7553 Soluble
216 V N 0.0000 Buried
217 T N -1.1479 Soluble
218 H N 0.0000 Buried
219 Q N -1.6326 Soluble
220 G N -0.6538 Soluble
221 L N -0.3494 Soluble
222 S N -0.5465 Soluble
223 S N -0.4226 Soluble
224 P N -0.4673 Soluble
225 V N 0.1272 Aggregation-prone
226 T N -0.4066 Soluble
227 K N -0.6967 Soluble
228 S N -0.6661 Soluble
229 F N -1.0086 Soluble
230 N N -2.2047 Soluble
231 R N -2.6761 Soluble
232 G N -1.4703 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6515 2.9393 CSV PDB
4.5 -0.6931 2.9284 CSV PDB
5.0 -0.7413 2.9226 CSV PDB
5.5 -0.7851 2.9269 CSV PDB
6.0 -0.8127 2.937 CSV PDB
6.5 -0.8175 2.9412 CSV PDB
7.0 -0.8007 2.9346 CSV PDB
7.5 -0.7689 2.9209 CSV PDB
8.0 -0.7284 2.905 CSV PDB
8.5 -0.6811 2.8901 CSV PDB
9.0 -0.6265 2.8792 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH