Anvatabart / 5tdn

A4DAB021_5tdn_B_A | Source PDB: 5tdn | Chains: B, A | Done
98.68
Yes
10 Å
Yes
Avg A4D Score
-0.6985
Max Score
2.1312
Min Score
-3.716
Total Score
-295.46
Score CDR
-0.458
Score non-CDR
-0.7581

Calculation Parameters

Chain Sequence(s) VQLVESGGGLQPGGSLRLCAASGFNIKDTYIHWVREAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLKSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQKKPGKAPKLLIYSASFLESGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVECLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.716
Maximum Score 2.1312
Average Score -0.6985
Total Score -295.4642

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 0.6839 Aggregation-prone
3 Q B -0.2262 Soluble
4 L B 0.0000 Buried
5 V B 0.1369 Aggregation-prone
6 E B 0.0000 Buried
7 S B -0.5242 Soluble
8 G B -0.8506 Soluble
9 G B -0.2791 Soluble
11 G B 0.1163 Aggregation-prone
12 L B 0.5249 Aggregation-prone
14 Q B -1.5411 Soluble
15 P B -1.6995 Soluble
16 G B -1.4657 Soluble
17 G B -1.1554 Soluble
18 S B -1.0655 Soluble
19 L B -0.9596 Soluble
20 R B -1.9438 Soluble
21 L B 0.0000 Buried
23 C B 0.0000 Buried
24 A B -0.2409 Soluble
25 A B -0.5489 Soluble
26 S B -0.3853 Soluble
27 G B -0.3507 Soluble
28 F B -1.0144 Soluble
29 N B -2.4864 Soluble
30 I B 0.0000 Buried
35 K B -3.1140 Soluble
36 D B -2.7817 Soluble
37 T B 0.0000 Buried
38 Y B 0.1140 Aggregation-prone
39 I B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 E B -0.9635 Soluble
45 A B 0.0000 Buried
46 P B -1.2755 Soluble
47 G B -1.6692 Soluble
48 K B -2.4954 Soluble
49 G B -1.7574 Soluble
50 L B 0.0000 Buried
51 E B -1.1437 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 A B 0.0000 Buried
55 R B -0.4992 Soluble
56 I B 0.0000 Buried
57 Y B -0.3238 Soluble
58 P B -1.1342 Soluble
59 T B -1.2968 Soluble
62 N B -0.9635 Soluble
63 G B -0.3665 Soluble
64 Y B 0.5374 Aggregation-prone
65 T B -0.4223 Soluble
66 R B -2.0006 Soluble
67 Y B -1.8429 Soluble
68 A B 0.0000 Buried
69 D B -2.6426 Soluble
70 S B -1.6931 Soluble
71 V B 0.0000 Buried
72 K B -2.8167 Soluble
74 G B -1.7019 Soluble
75 R B -1.2167 Soluble
76 F B 0.0000 Buried
77 T B -0.9931 Soluble
78 I B 0.0000 Buried
79 S B -0.0237 Soluble
80 A B -0.8644 Soluble
81 D B -1.4785 Soluble
82 T B -1.9768 Soluble
83 S B -1.6458 Soluble
84 K B -2.2478 Soluble
85 N B -1.8808 Soluble
86 T B -0.9260 Soluble
87 A B 0.0000 Buried
88 Y B -0.2489 Soluble
89 L B 0.0000 Buried
90 Q B -0.9913 Soluble
91 M B 0.0000 Buried
92 N B -1.2898 Soluble
93 S B -1.2451 Soluble
94 L B 0.0000 Buried
95 R B -2.4363 Soluble
96 A B -1.7943 Soluble
97 E B -2.3238 Soluble
98 D B 0.0000 Buried
99 T B -0.6488 Soluble
100 A B 0.0000 Buried
101 V B 0.3400 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 S B 0.0000 Buried
106 R B 0.0067 Aggregation-prone
107 W B 0.2464 Aggregation-prone
108 A B 0.1431 Aggregation-prone
115 M B 0.0000 Buried
116 D B -0.1948 Soluble
117 Y B 0.2815 Aggregation-prone
118 W B 0.0000 Buried
119 G B 0.0000 Buried
120 Q B -1.3935 Soluble
121 G B -0.5608 Soluble
122 T B 0.1138 Aggregation-prone
123 L B 0.5815 Aggregation-prone
124 V B 0.0000 Buried
125 T B -0.2074 Soluble
126 V B 0.0000 Buried
127 S B -0.8869 Soluble
128 S B -0.6577 Soluble
129 A B -0.4196 Soluble
130 S B -0.5439 Soluble
131 T B -0.7190 Soluble
132 K B -1.2000 Soluble
133 G B -1.4328 Soluble
134 P B 0.0000 Buried
135 S B -0.3245 Soluble
136 V B 0.0000 Buried
137 F B 0.0000 Buried
138 P B -1.0955 Soluble
139 L B 0.0000 Buried
140 A B -0.8270 Soluble
141 P B 0.0000 Buried
142 S B -0.7211 Soluble
143 S B -1.2451 Soluble
144 K B -1.8132 Soluble
145 S B -1.2125 Soluble
146 T B -0.9327 Soluble
147 S B -0.9189 Soluble
148 G B -0.8108 Soluble
149 G B -0.6318 Soluble
150 T B -0.4658 Soluble
151 A B 0.0000 Buried
152 A B 0.0000 Buried
153 L B 0.0000 Buried
154 G B 0.0000 Buried
155 C B 0.0000 Buried
156 L B 0.0000 Buried
157 V B 0.0000 Buried
158 K B -0.3019 Soluble
159 D B -0.4570 Soluble
160 Y B 0.0000 Buried
161 F B 0.0000 Buried
162 P B 0.0000 Buried
163 E B -0.8253 Soluble
164 P B -1.0299 Soluble
165 V B -0.9323 Soluble
166 T B -0.7649 Soluble
167 V B -0.4221 Soluble
168 S B -0.4444 Soluble
169 W B 0.0000 Buried
170 N B -0.7244 Soluble
171 S B -0.6682 Soluble
172 G B -0.5241 Soluble
173 A B -0.2510 Soluble
174 L B -0.0185 Soluble
175 T B -0.1759 Soluble
176 S B -0.3687 Soluble
177 G B -0.3288 Soluble
178 V B 0.1939 Aggregation-prone
179 H B 0.0000 Buried
180 T B 0.0922 Aggregation-prone
181 F B 0.0000 Buried
182 P B -0.3498 Soluble
183 A B 0.0581 Aggregation-prone
184 V B 0.3739 Aggregation-prone
185 L B 1.1046 Aggregation-prone
186 Q B 0.2730 Aggregation-prone
187 S B -0.0755 Soluble
188 S B -0.2141 Soluble
189 G B 0.0255 Aggregation-prone
190 L B 0.0727 Aggregation-prone
191 Y B 0.2747 Aggregation-prone
192 S B 0.0000 Buried
193 L B 0.0000 Buried
194 K B 0.0000 Buried
195 S B 0.0000 Buried
196 V B 0.0000 Buried
197 V B 0.0000 Buried
198 T B -0.1154 Soluble
199 V B 0.0000 Buried
200 P B -0.4990 Soluble
201 S B -0.5896 Soluble
202 S B -0.7517 Soluble
203 S B -0.7252 Soluble
204 L B -0.9272 Soluble
205 G B -1.0754 Soluble
206 T B -0.8369 Soluble
207 Q B -1.4170 Soluble
208 T B -1.1982 Soluble
209 Y B 0.0000 Buried
210 I B -1.0914 Soluble
211 C B 0.0000 Buried
212 N B -1.4509 Soluble
213 V B 0.0000 Buried
214 N B -2.3015 Soluble
215 H B 0.0000 Buried
216 K B -2.8968 Soluble
217 P B -1.6135 Soluble
218 S B -1.8648 Soluble
219 N B -2.6504 Soluble
220 T B -2.1881 Soluble
221 K B -2.7866 Soluble
222 V B -1.5451 Soluble
223 D B -2.2667 Soluble
224 K B -1.8449 Soluble
225 K B -2.1341 Soluble
226 V B 0.0000 Buried
227 E B -2.4244 Soluble
228 P B -1.3139 Soluble
2 I A -0.3345 Soluble
3 Q A -1.4931 Soluble
4 M A 0.0000 Buried
5 T A -1.3042 Soluble
6 Q A 0.0000 Buried
7 S A -0.8661 Soluble
8 P A -0.6067 Soluble
9 S A -0.8381 Soluble
10 S A -0.6907 Soluble
11 L A -0.4353 Soluble
12 S A -0.7469 Soluble
13 A A 0.0000 Buried
14 S A -0.5822 Soluble
15 V A 0.0928 Aggregation-prone
16 G A -0.7863 Soluble
17 D A -1.5551 Soluble
18 R A -2.2321 Soluble
19 V A 0.0000 Buried
20 T A -0.5860 Soluble
21 I A 0.0000 Buried
22 T A -0.7269 Soluble
23 C A 0.0000 Buried
24 R A -2.8082 Soluble
25 A A 0.0000 Buried
26 S A -1.7578 Soluble
27 Q A -2.5366 Soluble
28 D A -2.8499 Soluble
29 V A 0.0000 Buried
36 N A -1.9182 Soluble
37 T A -0.9085 Soluble
38 A A -0.1459 Soluble
39 V A 0.0000 Buried
40 A A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 K A 0.0000 Buried
45 K A -1.6453 Soluble
46 P A -1.5369 Soluble
47 G A -1.7001 Soluble
48 K A -2.6612 Soluble
49 A A -1.6868 Soluble
50 P A 0.0000 Buried
51 K A -1.6690 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 Y A 1.1276 Aggregation-prone
56 S A 0.5642 Aggregation-prone
57 A A 0.0000 Buried
65 S A 0.7213 Aggregation-prone
66 F A 2.1312 Aggregation-prone
67 L A 1.2414 Aggregation-prone
68 E A 0.0489 Aggregation-prone
69 S A -0.2626 Soluble
70 G A -0.5450 Soluble
71 V A -0.4027 Soluble
72 P A -0.3277 Soluble
74 S A -0.4112 Soluble
75 R A -0.6660 Soluble
76 F A 0.0000 Buried
77 S A 0.1622 Aggregation-prone
78 G A 0.0000 Buried
79 S A -0.5470 Soluble
80 R A -1.4806 Soluble
83 S A -1.2715 Soluble
84 G A -1.8575 Soluble
85 T A -2.2551 Soluble
86 D A -1.9872 Soluble
87 F A 0.0000 Buried
88 T A -0.7220 Soluble
89 L A 0.0000 Buried
90 T A -0.5946 Soluble
91 I A 0.0000 Buried
92 S A -1.2779 Soluble
93 S A -1.1091 Soluble
94 L A 0.0000 Buried
95 Q A -0.9152 Soluble
96 P A -0.9429 Soluble
97 E A -1.8472 Soluble
98 D A 0.0000 Buried
99 F A -0.5355 Soluble
100 A A 0.0000 Buried
101 T A -0.8035 Soluble
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 H A 0.3905 Aggregation-prone
108 Y A 0.6451 Aggregation-prone
109 T A 0.6211 Aggregation-prone
114 T A -0.0931 Soluble
115 P A -0.4706 Soluble
116 P A 0.0000 Buried
117 T A -0.2838 Soluble
118 F A -0.4809 Soluble
119 G A 0.0000 Buried
120 Q A -1.8615 Soluble
121 G A 0.0000 Buried
122 T A 0.0000 Buried
123 K A -1.3641 Soluble
124 V A 0.0000 Buried
125 E A -0.8779 Soluble
126 I A -0.3604 Soluble
127 K A -1.3634 Soluble
128 R A -1.1213 Soluble
129 T A -0.1750 Soluble
130 V A 0.4441 Aggregation-prone
131 A A 0.1634 Aggregation-prone
132 A A -0.0768 Soluble
133 P A 0.0000 Buried
134 S A -0.1362 Soluble
135 V A 0.0000 Buried
136 F A 0.0174 Aggregation-prone
137 I A 0.0000 Buried
138 F A 0.0000 Buried
139 P A -0.8164 Soluble
140 P A 0.0000 Buried
141 S A -1.6530 Soluble
142 D A -3.0414 Soluble
143 E A -2.9652 Soluble
144 Q A 0.0000 Buried
145 L A -2.2035 Soluble
146 K A -2.8848 Soluble
147 S A -1.8192 Soluble
148 G A -1.4817 Soluble
149 T A -1.2654 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 E A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.7676 Soluble
159 F A 0.0000 Buried
160 Y A -0.8199 Soluble
161 P A -1.3241 Soluble
162 R A -2.2059 Soluble
163 E A -2.8080 Soluble
164 A A -2.0844 Soluble
165 K A -2.1062 Soluble
166 V A -0.9527 Soluble
167 Q A -0.3986 Soluble
168 W A 0.0000 Buried
169 K A -0.4287 Soluble
170 V A 0.0000 Buried
171 D A -1.9151 Soluble
172 N A -1.4793 Soluble
173 A A -0.2330 Soluble
174 L A 0.7620 Aggregation-prone
175 Q A -0.2818 Soluble
176 S A -0.6634 Soluble
177 G A -1.3328 Soluble
178 N A -1.7046 Soluble
179 S A -1.5163 Soluble
180 Q A -1.5217 Soluble
181 E A -1.9045 Soluble
182 S A -0.7756 Soluble
183 V A -0.5727 Soluble
184 T A -1.1225 Soluble
185 E A -2.3002 Soluble
186 Q A -1.9972 Soluble
187 D A -2.4471 Soluble
189 K A -2.2801 Soluble
190 D A -1.6885 Soluble
191 S A -1.8268 Soluble
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A 0.0000 Buried
199 L A 0.0000 Buried
200 T A -0.7657 Soluble
201 L A -0.9567 Soluble
202 S A -1.1900 Soluble
203 K A -2.0380 Soluble
204 A A -2.0109 Soluble
205 D A -3.0459 Soluble
206 Y A 0.0000 Buried
207 E A -3.3965 Soluble
208 K A -3.7160 Soluble
209 H A -3.1920 Soluble
210 K A -3.3059 Soluble
211 V A -1.5628 Soluble
212 Y A 0.0000 Buried
213 A A -0.8007 Soluble
214 C A 0.0000 Buried
215 E A -0.6010 Soluble
216 V A 0.0000 Buried
217 T A -1.1429 Soluble
218 H A 0.0000 Buried
219 Q A -1.4572 Soluble
220 G A -0.4051 Soluble
221 L A -0.2505 Soluble
222 S A -0.4600 Soluble
223 S A -0.4373 Soluble
224 P A -0.5452 Soluble
225 V A -0.0400 Soluble
226 T A -0.4283 Soluble
227 K A -0.6458 Soluble
228 S A -0.5763 Soluble
229 F A -1.1663 Soluble
230 N A -1.9530 Soluble
231 R A -2.5622 Soluble
232 G A -2.1959 Soluble
233 E A -2.2318 Soluble
234 C A -0.7125 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7236 3.7147 CSV PDB
4.5 -0.7692 3.7014 CSV PDB
5.0 -0.8203 3.6811 CSV PDB
5.5 -0.8674 3.6572 CSV PDB
6.0 -0.8989 3.6334 CSV PDB
6.5 -0.906 3.6135 CSV PDB
7.0 -0.8895 3.6007 CSV PDB
7.5 -0.8577 3.5946 CSV PDB
8.0 -0.817 3.5922 CSV PDB
8.5 -0.7689 3.5912 CSV PDB
9.0 -0.7138 3.5904 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH