Tomuzotuximab / 5id1

A4DAB272_5id1_B_A | Source PDB: 5id1 | Chains: B, A | Done
99.56
Yes
10 Å
Yes
Avg A4D Score
-0.6811
Max Score
1.9879
Min Score
-3.8009
Total Score
-290.15
Score CDR
-0.2847
Score non-CDR
-0.7291

Calculation Parameters

Chain Sequence(s) QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKDILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) B (Heavy), A (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.8009
Maximum Score 1.9879
Average Score -0.6811
Total Score -290.1485

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q B -1.4943 Soluble
2 V B -0.9552 Soluble
3 Q B -1.6447 Soluble
4 L B 0.0000 Buried
5 K B -1.8925 Soluble
6 Q B 0.0000 Buried
7 S B -0.7856 Soluble
8 G B -1.0120 Soluble
9 P B -0.3452 Soluble
11 G B -0.2715 Soluble
12 L B 0.1041 Aggregation-prone
13 V B -0.6254 Soluble
14 Q B -1.2970 Soluble
15 P B -1.3073 Soluble
16 S B -1.6056 Soluble
17 Q B -1.9756 Soluble
18 S B -1.8723 Soluble
19 L B 0.0000 Buried
20 S B -0.8572 Soluble
21 I B 0.0000 Buried
22 T B -0.4987 Soluble
23 C B 0.0000 Buried
24 T B -1.0009 Soluble
25 V B 0.0000 Buried
26 S B -1.1444 Soluble
27 G B -0.9840 Soluble
28 F B -0.5463 Soluble
29 S B -0.8554 Soluble
30 L B 0.0000 Buried
35 T B -0.8762 Soluble
36 N B -0.8567 Soluble
37 Y B 0.4225 Aggregation-prone
38 G B 0.0000 Buried
39 V B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.4597 Soluble
45 S B -1.0283 Soluble
46 P B -1.2010 Soluble
47 G B -1.7440 Soluble
48 K B -2.2416 Soluble
49 G B -1.1377 Soluble
50 L B 0.0000 Buried
51 E B 0.0000 Buried
52 W B 0.0000 Buried
53 L B 0.0000 Buried
54 G B 0.0000 Buried
55 V B 0.0000 Buried
56 I B 0.0000 Buried
57 W B -0.5216 Soluble
58 S B -0.6425 Soluble
59 G B -1.2088 Soluble
63 G B -1.5277 Soluble
64 N B -1.8574 Soluble
65 T B -1.3037 Soluble
66 D B -1.0357 Soluble
67 Y B -0.4105 Soluble
68 N B -0.1853 Soluble
69 T B -0.2464 Soluble
70 P B -0.3968 Soluble
71 F B 0.0000 Buried
72 T B -0.4721 Soluble
74 S B -0.6509 Soluble
75 R B -1.2449 Soluble
76 L B 0.0000 Buried
77 S B -1.1947 Soluble
78 I B 0.0000 Buried
79 N B -1.7491 Soluble
80 K B -1.4322 Soluble
81 D B -1.7295 Soluble
82 N B -2.0963 Soluble
83 S B -1.6233 Soluble
84 K B -2.3205 Soluble
85 S B -1.5506 Soluble
86 Q B -1.4374 Soluble
87 V B 0.0000 Buried
88 F B -0.3412 Soluble
89 F B 0.0000 Buried
90 K B -1.9710 Soluble
91 M B 0.0000 Buried
92 N B -2.3192 Soluble
93 S B -1.6989 Soluble
94 L B 0.0000 Buried
95 Q B -2.1743 Soluble
96 S B -1.5313 Soluble
97 N B -2.0771 Soluble
98 D B 0.0000 Buried
99 T B -0.6038 Soluble
100 A B 0.0000 Buried
101 I B 0.4762 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B 0.0000 Buried
107 A B 0.0000 Buried
108 L B 1.1006 Aggregation-prone
109 T B 1.1952 Aggregation-prone
110 Y B 1.8981 Aggregation-prone
111 Y B 1.9879 Aggregation-prone
112 D B 0.0000 Buried
113 Y B 0.6368 Aggregation-prone
114 E B 0.0000 Buried
115 F B 0.0000 Buried
116 A B 0.2326 Aggregation-prone
117 Y B 0.0713 Aggregation-prone
118 W B -0.4970 Soluble
119 G B 0.0000 Buried
120 Q B -1.7044 Soluble
121 G B -0.7960 Soluble
122 T B 0.0000 Buried
123 L B 0.4080 Aggregation-prone
124 V B 0.0000 Buried
125 T B -0.2193 Soluble
126 V B 0.0000 Buried
127 S B -0.4590 Soluble
128 A B -0.2664 Soluble
129 A B -0.2539 Soluble
130 S B -0.4703 Soluble
131 T B -0.7242 Soluble
132 K B -1.2330 Soluble
133 G B -1.3463 Soluble
134 P B 0.0000 Buried
135 S B -0.3505 Soluble
136 V B 0.0000 Buried
137 F B -0.6067 Soluble
138 P B -1.2217 Soluble
139 L B 0.0000 Buried
140 A B -1.2379 Soluble
141 P B -0.7766 Soluble
142 G B -0.7622 Soluble
143 G B -0.8833 Soluble
144 T B -0.6238 Soluble
145 A B -0.3226 Soluble
146 A B 0.0000 Buried
147 L B 0.0000 Buried
148 G B 0.0000 Buried
149 C B 0.0000 Buried
150 L B 0.0000 Buried
151 V B 0.0000 Buried
152 K B 0.0000 Buried
153 D B -0.3893 Soluble
154 Y B 0.0000 Buried
155 F B 0.0000 Buried
156 P B 0.0000 Buried
157 E B -0.2478 Soluble
158 P B -0.4252 Soluble
159 V B -0.5285 Soluble
160 T B -0.5089 Soluble
161 V B -0.2132 Soluble
162 S B -0.4190 Soluble
163 W B 0.0000 Buried
164 N B -0.9556 Soluble
165 S B -0.7139 Soluble
166 G B -0.5816 Soluble
167 A B -0.2510 Soluble
168 L B -0.0270 Soluble
169 T B -0.1694 Soluble
170 S B -0.1832 Soluble
171 G B -0.2259 Soluble
172 V B 0.1612 Aggregation-prone
173 H B -0.2754 Soluble
174 T B 0.0368 Aggregation-prone
175 F B 0.0000 Buried
176 P B -0.3010 Soluble
177 A B 0.2409 Aggregation-prone
178 V B 0.4631 Aggregation-prone
179 L B 1.0742 Aggregation-prone
180 Q B 0.2280 Aggregation-prone
181 S B -0.0943 Soluble
182 S B -0.2336 Soluble
183 G B 0.0122 Aggregation-prone
184 L B 0.1436 Aggregation-prone
185 Y B 0.4561 Aggregation-prone
186 S B 0.2389 Aggregation-prone
187 L B 0.0000 Buried
188 S B 0.0000 Buried
189 S B 0.0000 Buried
190 V B 0.0000 Buried
191 V B 0.0000 Buried
192 T B -0.1499 Soluble
193 V B 0.0000 Buried
194 P B -0.5963 Soluble
195 S B -0.5973 Soluble
196 S B -0.6345 Soluble
197 S B -0.6608 Soluble
198 L B -0.8230 Soluble
199 G B -0.9778 Soluble
200 T B -0.7696 Soluble
201 Q B -1.3161 Soluble
202 T B -1.2383 Soluble
203 Y B 0.0000 Buried
204 I B -1.4931 Soluble
205 C B 0.0000 Buried
206 N B -1.4961 Soluble
207 V B 0.0000 Buried
208 N B -1.7931 Soluble
209 H B 0.0000 Buried
210 K B -2.4287 Soluble
211 P B -1.4208 Soluble
212 S B -1.6986 Soluble
213 N B -2.4252 Soluble
214 T B -1.9337 Soluble
215 K B -2.5886 Soluble
216 V B -1.6386 Soluble
217 D B -2.5230 Soluble
218 K B -2.1563 Soluble
219 R B -2.6909 Soluble
220 V B 0.0000 Buried
221 E B -2.9440 Soluble
222 P B -1.9376 Soluble
223 K B -2.4813 Soluble
1 D A -1.4161 Soluble
2 I A 0.0000 Buried
3 L A 0.6684 Aggregation-prone
4 L A 0.0000 Buried
5 T A -0.1888 Soluble
6 Q A -0.1366 Soluble
7 S A 0.1618 Aggregation-prone
8 P A 0.7779 Aggregation-prone
9 V A 1.8445 Aggregation-prone
10 I A 1.3374 Aggregation-prone
11 L A 0.5837 Aggregation-prone
12 S A -0.3852 Soluble
13 V A -1.1654 Soluble
14 S A -1.7976 Soluble
15 P A -1.9362 Soluble
16 G A -2.2393 Soluble
17 E A -3.0860 Soluble
18 R A -3.4433 Soluble
19 V A 0.0000 Buried
20 S A -0.7279 Soluble
21 F A 0.0000 Buried
22 S A -0.5650 Soluble
23 C A 0.0000 Buried
24 R A -1.7733 Soluble
25 A A -1.0117 Soluble
26 S A -0.8870 Soluble
27 Q A -1.5045 Soluble
28 S A -1.3958 Soluble
29 I A 0.0000 Buried
36 G A -0.9112 Soluble
37 T A -0.6907 Soluble
38 N A -0.7515 Soluble
39 I A 0.0000 Buried
40 H A 0.0000 Buried
41 W A 0.0000 Buried
42 Y A 0.0000 Buried
43 Q A 0.0000 Buried
44 Q A -1.2119 Soluble
45 R A -1.8896 Soluble
46 T A -1.6936 Soluble
47 N A -1.8270 Soluble
48 G A -1.5440 Soluble
49 S A -1.0229 Soluble
50 P A 0.0000 Buried
51 R A -0.7624 Soluble
52 L A 0.0000 Buried
53 L A 0.0000 Buried
54 I A 0.0000 Buried
55 K A -0.6761 Soluble
56 Y A -0.5821 Soluble
57 A A 0.0000 Buried
65 S A -1.2991 Soluble
66 E A -1.9978 Soluble
67 S A -1.1932 Soluble
68 I A -0.5681 Soluble
69 S A -0.3434 Soluble
70 G A -0.4718 Soluble
71 I A -0.2649 Soluble
72 P A -0.3285 Soluble
74 S A -0.6411 Soluble
75 R A -1.2544 Soluble
76 F A 0.0000 Buried
77 S A -0.9700 Soluble
78 G A -0.7326 Soluble
79 S A -0.8261 Soluble
80 G A -0.9636 Soluble
83 S A -0.8413 Soluble
84 G A -1.1559 Soluble
85 T A -1.5582 Soluble
86 D A -1.9507 Soluble
87 F A 0.0000 Buried
88 T A -0.6888 Soluble
89 L A 0.0000 Buried
90 S A -0.9577 Soluble
91 I A 0.0000 Buried
92 N A -2.8567 Soluble
93 S A -2.5190 Soluble
94 V A 0.0000 Buried
95 E A -2.4650 Soluble
96 S A -2.1580 Soluble
97 E A -2.0537 Soluble
98 D A 0.0000 Buried
99 I A 0.0000 Buried
100 A A -1.2283 Soluble
101 D A 0.0000 Buried
102 Y A 0.0000 Buried
103 Y A 0.0000 Buried
104 C A 0.0000 Buried
105 Q A 0.0000 Buried
106 Q A 0.0000 Buried
107 N A -0.5373 Soluble
108 N A -1.0281 Soluble
109 N A -0.8190 Soluble
114 W A 0.2102 Aggregation-prone
115 P A -0.1563 Soluble
116 T A 0.0000 Buried
117 T A 0.0025 Aggregation-prone
118 F A 0.1882 Aggregation-prone
119 G A 0.0000 Buried
120 A A 0.0086 Aggregation-prone
121 G A 0.1130 Aggregation-prone
122 T A 0.0000 Buried
123 K A -0.5147 Soluble
124 L A 0.0000 Buried
125 E A -1.0006 Soluble
126 L A 0.0000 Buried
127 K A -1.7253 Soluble
128 R A -1.1871 Soluble
129 T A -0.0778 Soluble
130 V A 0.4974 Aggregation-prone
131 A A 0.0746 Aggregation-prone
132 A A -0.0450 Soluble
133 P A 0.0000 Buried
134 S A -0.0634 Soluble
135 V A 0.0867 Aggregation-prone
136 F A 0.2576 Aggregation-prone
137 I A 0.1917 Aggregation-prone
138 F A 0.0000 Buried
139 P A -0.5172 Soluble
140 P A -0.7355 Soluble
141 S A -1.6707 Soluble
142 D A -2.8808 Soluble
143 E A -2.5354 Soluble
144 Q A 0.0000 Buried
145 L A -2.2378 Soluble
146 K A -2.6996 Soluble
147 S A -1.7071 Soluble
148 G A -1.2691 Soluble
149 T A -1.0579 Soluble
150 A A 0.0000 Buried
151 S A 0.0000 Buried
152 V A 0.0000 Buried
153 V A 0.0000 Buried
154 C A 0.0000 Buried
155 L A 0.0000 Buried
156 L A 0.0000 Buried
157 N A 0.0000 Buried
158 N A -0.8840 Soluble
159 F A 0.0000 Buried
160 Y A -0.9688 Soluble
161 P A -1.5422 Soluble
162 R A -2.7103 Soluble
163 E A -3.0944 Soluble
164 A A -2.3161 Soluble
165 K A -2.3701 Soluble
166 V A -1.2703 Soluble
167 Q A -0.9467 Soluble
168 W A 0.0000 Buried
169 K A -0.6367 Soluble
170 V A 0.0000 Buried
171 D A -1.7519 Soluble
172 N A -1.4206 Soluble
173 A A -0.2154 Soluble
174 L A 0.6586 Aggregation-prone
175 Q A -0.2496 Soluble
176 S A -0.4442 Soluble
177 G A -0.9227 Soluble
178 N A -0.8619 Soluble
179 S A -1.2141 Soluble
180 Q A -1.5350 Soluble
181 E A -1.9387 Soluble
182 S A -0.9156 Soluble
183 V A -0.5422 Soluble
184 T A -1.0008 Soluble
185 E A -2.1842 Soluble
186 Q A 0.0000 Buried
187 D A -1.9889 Soluble
188 S A -2.2753 Soluble
189 K A -2.6061 Soluble
190 D A -1.8649 Soluble
191 S A 0.0000 Buried
192 T A 0.0000 Buried
193 Y A 0.0000 Buried
194 S A 0.0000 Buried
195 L A 0.0000 Buried
196 S A 0.0000 Buried
197 S A 0.0000 Buried
198 T A -0.6828 Soluble
199 L A 0.0000 Buried
200 T A -0.3652 Soluble
201 L A -0.8021 Soluble
202 S A -1.2156 Soluble
203 K A -2.3278 Soluble
204 A A -2.1486 Soluble
205 D A -2.8320 Soluble
206 Y A 0.0000 Buried
207 E A -3.7608 Soluble
208 K A -3.8009 Soluble
209 H A -3.1154 Soluble
210 K A -3.1825 Soluble
211 V A -1.4460 Soluble
212 Y A 0.0000 Buried
213 A A 0.0000 Buried
214 C A 0.0000 Buried
215 E A -1.0897 Soluble
216 V A 0.0000 Buried
217 T A -1.2818 Soluble
218 H A 0.0000 Buried
219 Q A -1.4982 Soluble
220 G A -0.3313 Soluble
221 L A -0.1629 Soluble
222 S A -0.4304 Soluble
223 S A -0.3991 Soluble
224 P A -0.5318 Soluble
225 V A -0.0272 Soluble
226 T A -0.4878 Soluble
227 K A -0.6938 Soluble
228 S A -0.6734 Soluble
229 F A -0.8822 Soluble
230 N A -2.0197 Soluble
231 R A -2.3223 Soluble
232 G A -1.2572 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6712 2.9683 CSV PDB
4.5 -0.7064 2.9171 CSV PDB
5.0 -0.749 2.8465 CSV PDB
5.5 -0.7904 2.766 CSV PDB
6.0 -0.82 2.6818 CSV PDB
6.5 -0.829 2.5962 CSV PDB
7.0 -0.8165 2.5104 CSV PDB
7.5 -0.7893 2.4249 CSV PDB
8.0 -0.7539 2.3405 CSV PDB
8.5 -0.7133 2.2795 CSV PDB
9.0 -0.6681 2.3798 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH