Paridiprubart / 4r7d

A4DAB203_4r7d_C_D | Source PDB: 4r7d | Chains: C, D | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6613
Max Score
1.7504
Min Score
-3.6992
Total Score
-278.39
Score CDR
-0.1713
Score non-CDR
-0.7199

Calculation Parameters

Chain Sequence(s) QVQLQESGPGLVKPSDTLSLTCAVSGYSITGGYSWHWIRQPPGKGLEWMGYIHYSGYTDFNPSLKTRITISRDTSKNQFSLKLSSVTAVDTAVYYCARKDPSDAFPYWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPIVLTQSPDFQSVTPKEKVTITCRASQSISDHLHWYQQKPDQSPKLLIKYASHAISGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQGHSFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) C (Heavy), D (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.6992
Maximum Score 1.7504
Average Score -0.6613
Total Score -278.391

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q C -1.4998 Soluble
2 V C -0.9498 Soluble
3 Q C -1.6900 Soluble
4 L C 0.0000 Buried
5 Q C -1.6070 Soluble
6 E C 0.0000 Buried
7 S C -0.7775 Soluble
8 G C -0.5519 Soluble
9 P C -0.5584 Soluble
11 G C -0.4551 Soluble
12 L C -0.3384 Soluble
13 V C 0.0000 Buried
14 K C -1.8014 Soluble
15 P C -1.2124 Soluble
16 S C -1.0886 Soluble
17 D C -1.2884 Soluble
18 T C -1.0846 Soluble
19 L C 0.0000 Buried
20 S C -0.7774 Soluble
21 L C 0.0000 Buried
22 T C -0.7040 Soluble
23 C C 0.0000 Buried
24 A C -1.1760 Soluble
25 V C 0.0000 Buried
26 S C -1.1934 Soluble
27 G C -0.9727 Soluble
28 Y C -0.3145 Soluble
29 S C -0.3405 Soluble
30 I C 0.0000 Buried
31 T C -0.1607 Soluble
35 G C -0.2814 Soluble
36 G C 0.0144 Aggregation-prone
37 Y C 0.2326 Aggregation-prone
38 S C 0.0000 Buried
39 W C 0.0000 Buried
40 H C 0.0000 Buried
41 W C 0.0000 Buried
42 I C 0.0000 Buried
43 R C 0.0000 Buried
44 Q C -0.8212 Soluble
45 P C -0.5405 Soluble
46 P C -0.8111 Soluble
47 G C -1.4782 Soluble
48 K C -2.2647 Soluble
49 G C -1.3957 Soluble
50 L C 0.0000 Buried
51 E C -0.8332 Soluble
52 W C 0.0000 Buried
53 M C 0.0000 Buried
54 G C 0.0000 Buried
55 Y C 0.0547 Aggregation-prone
56 I C 0.0000 Buried
57 H C 0.2227 Aggregation-prone
58 Y C 0.4989 Aggregation-prone
59 S C 0.2362 Aggregation-prone
63 G C 0.3686 Aggregation-prone
64 Y C 0.9324 Aggregation-prone
65 T C 0.0451 Aggregation-prone
66 D C -0.7323 Soluble
67 F C -0.4587 Soluble
68 N C -0.5601 Soluble
69 P C -0.8686 Soluble
70 S C -0.9851 Soluble
71 L C 0.0000 Buried
72 K C -1.9676 Soluble
74 T C -1.3979 Soluble
75 R C -1.2346 Soluble
76 I C 0.0000 Buried
77 T C -0.6780 Soluble
78 I C 0.0000 Buried
79 S C -0.5999 Soluble
80 R C -1.3070 Soluble
81 D C -1.8283 Soluble
82 T C -1.4373 Soluble
83 S C -1.4985 Soluble
84 K C -2.3673 Soluble
85 N C -1.6446 Soluble
86 Q C -1.5549 Soluble
87 F C 0.0000 Buried
88 S C -0.7049 Soluble
89 L C 0.0000 Buried
90 K C -1.2517 Soluble
91 L C 0.0000 Buried
92 S C -0.8929 Soluble
93 S C -0.7930 Soluble
94 V C 0.0000 Buried
95 T C 0.0682 Aggregation-prone
96 A C 0.6558 Aggregation-prone
97 V C 1.7504 Aggregation-prone
98 D C 0.0000 Buried
99 T C 0.6371 Aggregation-prone
100 A C 0.0000 Buried
101 V C 0.0343 Aggregation-prone
102 Y C 0.0000 Buried
103 Y C 0.0000 Buried
104 C C 0.0000 Buried
105 A C 0.0000 Buried
106 R C 0.0000 Buried
107 K C 0.0000 Buried
108 D C -0.3894 Soluble
109 P C -0.4497 Soluble
110 S C -0.5394 Soluble
113 D C -0.6220 Soluble
114 A C 0.0000 Buried
115 F C 0.0000 Buried
116 P C -0.1378 Soluble
117 Y C 0.0151 Aggregation-prone
118 W C -0.5758 Soluble
119 G C 0.0000 Buried
120 Q C -1.8949 Soluble
121 G C 0.0000 Buried
122 T C -0.3198 Soluble
123 L C 0.0767 Aggregation-prone
124 V C 0.0000 Buried
125 T C 0.0109 Aggregation-prone
126 V C 0.0000 Buried
127 S C -0.6878 Soluble
128 S C -0.8461 Soluble
129 A C -0.5103 Soluble
130 S C -0.6086 Soluble
131 T C -0.6071 Soluble
132 K C -0.9666 Soluble
133 G C -1.4283 Soluble
134 P C -0.6543 Soluble
135 S C -0.4473 Soluble
136 V C 0.0000 Buried
137 F C -0.6270 Soluble
138 P C -0.7909 Soluble
139 L C 0.0000 Buried
140 A C -0.8767 Soluble
141 P C -0.5895 Soluble
142 T C -0.1961 Soluble
143 A C -0.1281 Soluble
144 A C 0.0000 Buried
145 L C 0.0000 Buried
146 G C 0.0000 Buried
147 C C 0.0000 Buried
148 L C 0.0000 Buried
149 V C 0.0000 Buried
150 K C -0.1960 Soluble
151 D C -0.4744 Soluble
152 Y C 0.0000 Buried
153 F C 0.0000 Buried
154 P C 0.0000 Buried
155 E C -0.5191 Soluble
156 P C -0.6696 Soluble
157 V C 0.0000 Buried
158 T C -0.6214 Soluble
159 V C -0.1970 Soluble
160 S C -0.3432 Soluble
161 W C 0.0000 Buried
162 N C -0.6382 Soluble
163 S C -0.5902 Soluble
164 G C -0.5963 Soluble
165 A C -0.2019 Soluble
166 L C -0.0181 Soluble
167 T C -0.1887 Soluble
168 S C -0.1853 Soluble
169 G C -0.1901 Soluble
170 V C 0.1400 Aggregation-prone
171 H C -0.3151 Soluble
172 T C -0.1448 Soluble
173 F C 0.0000 Buried
174 P C -0.2695 Soluble
175 A C 0.1214 Aggregation-prone
176 V C 0.2837 Aggregation-prone
177 L C 0.9533 Aggregation-prone
178 Q C 0.0288 Aggregation-prone
179 S C -0.1913 Soluble
180 S C -0.2555 Soluble
181 G C -0.0236 Soluble
182 L C 0.0615 Aggregation-prone
183 Y C 0.3547 Aggregation-prone
184 S C 0.0655 Aggregation-prone
185 L C 0.0000 Buried
186 S C 0.0000 Buried
187 S C 0.0000 Buried
188 V C 0.0000 Buried
189 V C 0.0000 Buried
190 T C -0.1507 Soluble
191 V C 0.0000 Buried
192 P C -0.3482 Soluble
193 S C -0.5209 Soluble
194 S C -0.5551 Soluble
195 S C -0.6141 Soluble
196 L C -0.6930 Soluble
197 G C -0.7591 Soluble
198 T C -0.8566 Soluble
199 Q C -1.2695 Soluble
200 T C -1.2509 Soluble
201 Y C 0.0000 Buried
202 I C -1.1165 Soluble
203 C C 0.0000 Buried
204 N C -1.3112 Soluble
205 V C 0.0000 Buried
206 N C -1.8609 Soluble
207 H C 0.0000 Buried
208 K C -2.7747 Soluble
209 P C -1.6573 Soluble
210 S C -1.9956 Soluble
211 N C -2.5092 Soluble
212 T C -2.1573 Soluble
213 K C -2.5520 Soluble
214 V C -1.3130 Soluble
215 D C -1.8885 Soluble
216 K C -1.8070 Soluble
217 R C -2.5201 Soluble
218 V C 0.0000 Buried
219 E C -2.3792 Soluble
220 P C -1.1422 Soluble
2 I D 1.2764 Aggregation-prone
3 V D 1.4973 Aggregation-prone
4 L D 0.0000 Buried
5 T D -0.6795 Soluble
6 Q D -1.0265 Soluble
7 S D -1.0878 Soluble
8 P D -0.8717 Soluble
9 D D -1.5710 Soluble
10 F D -0.0309 Soluble
11 Q D -0.4965 Soluble
12 S D -0.7638 Soluble
13 V D 0.0000 Buried
14 T D -2.1725 Soluble
15 P D -2.4150 Soluble
16 K D -3.3275 Soluble
17 E D -3.6992 Soluble
18 K D -3.3977 Soluble
19 V D 0.0000 Buried
20 T D -0.7054 Soluble
21 I D 0.0000 Buried
22 T D -0.8077 Soluble
23 C D 0.0000 Buried
24 R D -2.2523 Soluble
25 A D 0.0000 Buried
26 S D -0.6022 Soluble
27 Q D -1.4485 Soluble
28 S D -1.4590 Soluble
29 I D 0.0000 Buried
36 S D -1.1159 Soluble
37 D D -1.2873 Soluble
38 H D -0.9468 Soluble
39 L D 0.0000 Buried
40 H D 0.0000 Buried
41 W D 0.0000 Buried
42 Y D 0.0000 Buried
43 Q D 0.0000 Buried
44 Q D 0.0000 Buried
45 K D -2.0162 Soluble
46 P D -1.8227 Soluble
47 D D -2.5893 Soluble
48 Q D -2.4764 Soluble
49 S D -1.4675 Soluble
50 P D 0.0000 Buried
51 K D -1.2612 Soluble
52 L D 0.0000 Buried
53 L D 0.0000 Buried
54 I D 0.0000 Buried
55 K D -0.6379 Soluble
56 Y D -0.4898 Soluble
57 A D 0.0000 Buried
65 S D -0.8484 Soluble
66 H D -1.0382 Soluble
67 A D -0.4873 Soluble
68 I D -0.2519 Soluble
69 S D -0.3231 Soluble
70 G D -0.4178 Soluble
71 V D -0.2570 Soluble
72 P D -0.3073 Soluble
74 S D -0.6430 Soluble
75 R D -1.1593 Soluble
76 F D 0.0000 Buried
77 S D -0.7471 Soluble
78 G D -0.5234 Soluble
79 S D -0.7617 Soluble
80 G D -1.0857 Soluble
83 S D -0.9673 Soluble
84 G D -1.3765 Soluble
85 T D -1.7667 Soluble
86 D D -2.0834 Soluble
87 F D 0.0000 Buried
88 T D -0.7015 Soluble
89 L D 0.0000 Buried
90 T D -0.8621 Soluble
91 I D 0.0000 Buried
92 N D -2.7281 Soluble
93 S D -2.7856 Soluble
94 L D 0.0000 Buried
95 E D -2.7726 Soluble
96 A D -2.4820 Soluble
97 E D -2.8199 Soluble
98 D D 0.0000 Buried
99 A D -1.5216 Soluble
100 A D 0.0000 Buried
101 T D -0.7140 Soluble
102 Y D 0.0000 Buried
103 Y D 0.0000 Buried
104 C D 0.0000 Buried
105 Q D 0.0000 Buried
106 Q D 0.0000 Buried
107 G D 0.0000 Buried
108 H D -0.8146 Soluble
109 S D 0.1717 Aggregation-prone
114 F D 1.0773 Aggregation-prone
115 P D 0.5540 Aggregation-prone
116 L D 0.0000 Buried
117 T D 0.5414 Aggregation-prone
118 F D 0.2614 Aggregation-prone
119 G D 0.0000 Buried
120 G D -1.1003 Soluble
121 G D -1.0360 Soluble
122 T D 0.0000 Buried
123 K D -1.0791 Soluble
124 V D 0.0000 Buried
125 E D -0.9215 Soluble
126 I D 0.0000 Buried
127 K D -1.8416 Soluble
128 R D -0.9941 Soluble
129 T D 0.1955 Aggregation-prone
130 V D 0.9874 Aggregation-prone
131 A D 0.2803 Aggregation-prone
132 A D 0.0131 Aggregation-prone
133 P D 0.0000 Buried
134 S D -0.0275 Soluble
135 V D 0.0685 Aggregation-prone
136 F D 0.1300 Aggregation-prone
137 I D 0.0518 Aggregation-prone
138 F D 0.0000 Buried
139 P D -0.6837 Soluble
140 P D -0.7914 Soluble
141 S D -1.5167 Soluble
142 D D -2.9182 Soluble
143 E D -2.7521 Soluble
144 Q D 0.0000 Buried
145 L D -2.1313 Soluble
146 K D -2.8908 Soluble
147 S D -1.7543 Soluble
148 G D -1.4081 Soluble
149 T D -1.2012 Soluble
150 A D 0.0000 Buried
151 S D 0.0000 Buried
152 V D 0.0000 Buried
153 V D 0.0000 Buried
154 C D 0.0000 Buried
155 L D 0.0000 Buried
156 L D 0.0000 Buried
157 N D 0.0000 Buried
158 N D -0.9356 Soluble
159 F D 0.0000 Buried
160 Y D 0.0000 Buried
161 P D -1.6927 Soluble
162 R D -2.9932 Soluble
163 E D -3.2545 Soluble
164 A D -2.3547 Soluble
165 K D -2.3938 Soluble
166 V D -1.0200 Soluble
167 Q D -0.4697 Soluble
168 W D 0.0000 Buried
169 K D -0.5116 Soluble
170 V D 0.0000 Buried
171 D D -2.0437 Soluble
172 N D -1.3505 Soluble
173 A D -0.2339 Soluble
174 L D 0.8068 Aggregation-prone
175 Q D -0.0369 Soluble
176 S D -0.3812 Soluble
177 G D -0.9648 Soluble
178 N D -0.8938 Soluble
179 S D -1.3354 Soluble
180 Q D -1.9543 Soluble
181 E D -2.2046 Soluble
182 S D 0.0000 Buried
183 V D -0.7948 Soluble
184 T D -0.8917 Soluble
185 E D -1.5192 Soluble
186 Q D 0.0000 Buried
187 D D -2.0536 Soluble
188 S D -2.5098 Soluble
189 K D -2.9256 Soluble
190 D D -2.2935 Soluble
191 S D 0.0000 Buried
192 T D 0.0000 Buried
193 Y D 0.0000 Buried
194 S D 0.0000 Buried
195 L D 0.0000 Buried
196 S D 0.0000 Buried
197 S D 0.0000 Buried
198 T D -0.8356 Soluble
199 L D 0.0000 Buried
200 T D -0.4951 Soluble
201 L D -0.6621 Soluble
202 S D -1.0763 Soluble
203 K D -2.0699 Soluble
204 A D -1.9448 Soluble
205 D D -2.6033 Soluble
206 Y D 0.0000 Buried
207 E D -3.6769 Soluble
208 K D -3.6331 Soluble
209 H D -3.1902 Soluble
210 K D -3.1285 Soluble
211 V D -1.8616 Soluble
212 Y D 0.0000 Buried
213 A D 0.0000 Buried
214 C D 0.0000 Buried
215 E D -0.8467 Soluble
216 V D 0.0000 Buried
217 T D -1.1881 Soluble
218 H D 0.0000 Buried
219 Q D -1.7539 Soluble
220 G D -0.3491 Soluble
221 L D -0.1666 Soluble
222 S D -0.4750 Soluble
223 S D -0.3963 Soluble
224 P D -0.4413 Soluble
225 V D 0.1623 Aggregation-prone
226 T D -0.4501 Soluble
227 K D -0.8242 Soluble
228 S D -0.8263 Soluble
229 F D -1.0926 Soluble
230 N D -2.1853 Soluble
231 R D -2.1485 Soluble
232 G D -1.3167 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Downloads
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
Load structure at specific pH condition
A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6952 3.0601 CSV PDB
4.5 -0.7358 3.0488 CSV PDB
5.0 -0.782 3.031 CSV PDB
5.5 -0.8231 3.0129 CSV PDB
6.0 -0.8467 3.0037 CSV PDB
6.5 -0.8458 3.0063 CSV PDB
7.0 -0.8237 3.0094 CSV PDB
7.5 -0.7892 3.0002 CSV PDB
8.0 -0.7478 2.9786 CSV PDB
8.5 -0.7007 2.951 CSV PDB
9.0 -0.6476 2.9226 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH