Arumakimig / 5bvj

A4DAB025_5bvj_F_E | Source PDB: 5bvj | Chains: F, E | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7212
Max Score
1.5119
Min Score
-3.8571
Total Score
-306.5
Score CDR
-0.4079
Score non-CDR
-0.7583

Calculation Parameters

Chain Sequence(s) VQLVESGGGVVQPGRSLRLSCAASGFTFSVYGMNWVRQAPGKGLEWVAIIWYDGDNQYYADSVKGRFTISRDNSKNTLYLQMNGLRAEDTAVYYCARDLRTGPFDYWGQGTLVTVSSASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKEIVLTQSPDFQSVTPKEKVTITCRASQSIGSSLHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAAAYYCHQSSSLPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input.pdb
Selected Chain(s) F (Heavy), E (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.8571
Maximum Score 1.5119
Average Score -0.7212
Total Score -306.502

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V F 0.7849 Aggregation-prone
3 Q F -0.4915 Soluble
4 L F 0.0000 Buried
5 V F 0.0891 Aggregation-prone
6 E F 0.0000 Buried
7 S F -0.3877 Soluble
8 G F -0.6775 Soluble
9 G F 0.0339 Aggregation-prone
11 G F 0.4808 Aggregation-prone
12 V F 1.1798 Aggregation-prone
13 V F -0.2081 Soluble
14 Q F -1.2550 Soluble
15 P F -1.7982 Soluble
16 G F -2.1154 Soluble
17 R F -2.6801 Soluble
18 S F -1.9083 Soluble
19 L F -1.1766 Soluble
20 R F -1.7516 Soluble
21 L F 0.0000 Buried
22 S F -0.4604 Soluble
23 C F 0.0000 Buried
24 A F -0.4033 Soluble
25 A F 0.0000 Buried
26 S F -0.5277 Soluble
27 G F -0.1645 Soluble
28 F F 0.3025 Aggregation-prone
29 T F 0.3521 Aggregation-prone
30 F F 0.0000 Buried
35 S F 0.0086 Aggregation-prone
36 V F 1.2155 Aggregation-prone
37 Y F 0.7122 Aggregation-prone
38 G F 0.0426 Aggregation-prone
39 M F 0.0000 Buried
40 N F 0.0000 Buried
41 W F 0.0000 Buried
42 V F 0.0000 Buried
43 R F 0.0000 Buried
44 Q F -0.7024 Soluble
45 A F -1.0813 Soluble
46 P F -0.6832 Soluble
47 G F -1.4645 Soluble
48 K F -2.2363 Soluble
49 G F -1.3821 Soluble
50 L F 0.0000 Buried
51 E F -1.0361 Soluble
52 W F 0.0000 Buried
53 V F 0.0000 Buried
54 A F 0.0000 Buried
55 I F 0.0000 Buried
56 I F 0.0000 Buried
57 W F -0.7537 Soluble
58 Y F -0.0929 Soluble
59 D F -1.9507 Soluble
62 G F -2.1768 Soluble
63 D F -2.9417 Soluble
64 N F -2.4383 Soluble
65 Q F -1.1347 Soluble
66 Y F -0.3153 Soluble
67 Y F -0.8380 Soluble
68 A F -1.5073 Soluble
69 D F -2.5834 Soluble
70 S F -1.6251 Soluble
71 V F 0.0000 Buried
72 K F -2.4993 Soluble
74 G F -1.7825 Soluble
75 R F -1.4254 Soluble
76 F F 0.0000 Buried
77 T F -0.9314 Soluble
78 I F 0.0000 Buried
79 S F -0.9871 Soluble
80 R F -1.1625 Soluble
81 D F -1.6414 Soluble
82 N F -1.5697 Soluble
83 S F -1.5500 Soluble
84 K F -2.3338 Soluble
85 N F -1.6609 Soluble
86 T F -1.0161 Soluble
87 L F 0.0000 Buried
88 Y F -0.4704 Soluble
89 L F 0.0000 Buried
90 Q F -1.3375 Soluble
91 M F 0.0000 Buried
92 N F -2.0373 Soluble
93 G F -1.8625 Soluble
94 L F 0.0000 Buried
95 R F -2.3611 Soluble
96 A F -1.5610 Soluble
97 E F -2.1777 Soluble
98 D F 0.0000 Buried
99 T F -0.4425 Soluble
100 A F 0.0000 Buried
101 V F 0.6105 Aggregation-prone
102 Y F 0.0000 Buried
103 Y F 0.0000 Buried
104 C F 0.0000 Buried
105 A F 0.0000 Buried
106 R F 0.0000 Buried
107 D F 0.0000 Buried
108 L F -0.4434 Soluble
109 R F -1.4146 Soluble
110 T F -0.6835 Soluble
113 G F 0.0000 Buried
114 P F 0.0000 Buried
115 F F 0.0000 Buried
116 D F 0.0000 Buried
117 Y F 0.3502 Aggregation-prone
118 W F 0.0000 Buried
119 G F 0.0000 Buried
120 Q F -1.5316 Soluble
121 G F -0.5438 Soluble
122 T F 0.2564 Aggregation-prone
123 L F 1.0610 Aggregation-prone
124 V F 0.0000 Buried
125 T F 0.0000 Buried
126 V F 0.0000 Buried
127 S F -0.5448 Soluble
128 S F -0.5253 Soluble
129 A F -0.3109 Soluble
130 S F -0.5716 Soluble
131 T F -0.5411 Soluble
132 K F -1.1341 Soluble
133 G F -1.2932 Soluble
134 P F 0.0000 Buried
135 S F -0.2365 Soluble
136 V F 0.0000 Buried
137 F F -0.7034 Soluble
138 P F -1.2058 Soluble
139 L F 0.0000 Buried
140 A F -1.2389 Soluble
141 P F -0.7783 Soluble
142 G F -0.6478 Soluble
143 T F -0.4973 Soluble
144 A F -0.2592 Soluble
145 A F 0.0000 Buried
146 L F 0.0000 Buried
147 G F 0.0000 Buried
148 C F 0.0000 Buried
149 L F 0.0000 Buried
150 V F 0.0000 Buried
151 K F 0.0000 Buried
152 D F -0.2836 Soluble
153 Y F 0.0000 Buried
154 F F 0.0000 Buried
155 P F 0.0000 Buried
156 E F -0.4292 Soluble
157 P F -0.8022 Soluble
158 V F -0.6655 Soluble
159 T F -0.5410 Soluble
160 V F -0.3262 Soluble
161 S F -0.3398 Soluble
162 W F 0.0000 Buried
163 N F -0.7330 Soluble
164 S F -0.6188 Soluble
165 G F -0.5684 Soluble
166 A F -0.2287 Soluble
167 L F 0.0326 Aggregation-prone
168 T F -0.1576 Soluble
169 S F -0.1775 Soluble
170 G F -0.2281 Soluble
171 V F 0.1256 Aggregation-prone
172 H F -0.1304 Soluble
173 T F 0.0425 Aggregation-prone
174 F F 0.0000 Buried
175 P F -0.1888 Soluble
176 A F 0.3517 Aggregation-prone
177 V F 0.7765 Aggregation-prone
178 L F 1.5119 Aggregation-prone
179 Q F 0.5377 Aggregation-prone
180 S F 0.0452 Aggregation-prone
181 S F -0.1134 Soluble
182 G F 0.1413 Aggregation-prone
183 L F 0.2514 Aggregation-prone
184 Y F 0.5576 Aggregation-prone
185 S F 0.0000 Buried
186 L F 0.0000 Buried
187 S F 0.0000 Buried
188 S F 0.0000 Buried
189 V F 0.0000 Buried
190 V F 0.0000 Buried
191 T F -0.1737 Soluble
192 V F 0.0000 Buried
193 P F -0.5073 Soluble
194 S F -0.5308 Soluble
195 S F -0.6218 Soluble
196 S F -0.6282 Soluble
197 L F -0.8689 Soluble
198 G F -1.0515 Soluble
199 T F -0.9377 Soluble
200 Q F -1.2852 Soluble
201 T F -1.1751 Soluble
202 Y F 0.0000 Buried
203 I F -1.3041 Soluble
204 C F 0.0000 Buried
205 N F -1.3681 Soluble
206 V F 0.0000 Buried
207 N F -1.7444 Soluble
208 H F 0.0000 Buried
209 K F -2.7256 Soluble
210 P F -1.6575 Soluble
211 S F -1.8146 Soluble
212 N F -2.5378 Soluble
213 T F -2.1230 Soluble
214 K F -2.4747 Soluble
215 V F -1.3659 Soluble
216 D F -2.1207 Soluble
217 K F -1.9632 Soluble
218 R F -2.6594 Soluble
219 V F 0.0000 Buried
220 E F -2.9751 Soluble
221 P F -1.9149 Soluble
222 K F -2.3469 Soluble
1 E E -1.6944 Soluble
2 I E 0.0000 Buried
3 V E 0.6824 Aggregation-prone
4 L E 0.0000 Buried
5 T E -0.7803 Soluble
6 Q E 0.0000 Buried
7 S E -1.2351 Soluble
8 P E -1.2471 Soluble
9 D E -2.1366 Soluble
10 F E -1.5180 Soluble
11 Q E -1.2504 Soluble
12 S E -0.9551 Soluble
13 V E 0.0000 Buried
14 T E -2.1746 Soluble
15 P E -2.7727 Soluble
16 K E -3.5058 Soluble
17 E E -3.8571 Soluble
18 K E -3.3721 Soluble
19 V E 0.0000 Buried
20 T E -0.6183 Soluble
21 I E 0.0000 Buried
22 T E -1.0501 Soluble
23 C E 0.0000 Buried
24 R E -2.4309 Soluble
25 A E 0.0000 Buried
26 S E -1.1013 Soluble
27 Q E -1.7801 Soluble
28 S E -1.4606 Soluble
29 I E 0.0000 Buried
36 G E -0.8326 Soluble
37 S E -0.6806 Soluble
38 S E -0.2204 Soluble
39 L E 0.0000 Buried
40 H E 0.0000 Buried
41 W E 0.0000 Buried
42 Y E 0.0000 Buried
43 Q E 0.0000 Buried
44 Q E 0.0000 Buried
45 K E -2.0040 Soluble
46 P E -2.0816 Soluble
47 D E -2.7491 Soluble
48 Q E -2.6686 Soluble
49 S E -1.7903 Soluble
50 P E 0.0000 Buried
51 K E -1.4322 Soluble
52 L E 0.0000 Buried
53 L E 0.0000 Buried
54 I E 0.0000 Buried
55 K E -0.4737 Soluble
56 Y E -0.1749 Soluble
57 A E 0.0000 Buried
65 S E -0.8441 Soluble
66 Q E -1.1449 Soluble
67 S E -0.7356 Soluble
68 F E -0.4427 Soluble
69 S E -0.4197 Soluble
70 G E -0.4811 Soluble
71 V E -0.3376 Soluble
72 P E -0.4636 Soluble
74 S E -0.5771 Soluble
75 R E -0.9303 Soluble
76 F E 0.0000 Buried
77 S E -0.6127 Soluble
78 G E 0.0000 Buried
79 S E -0.7769 Soluble
80 G E -1.1240 Soluble
83 S E -1.1462 Soluble
84 G E -1.3894 Soluble
85 T E -1.9905 Soluble
86 D E -2.5098 Soluble
87 F E 0.0000 Buried
88 T E -0.8124 Soluble
89 L E 0.0000 Buried
90 T E -0.6385 Soluble
91 I E 0.0000 Buried
92 N E -2.3145 Soluble
93 S E -2.8255 Soluble
94 L E 0.0000 Buried
95 E E -2.8579 Soluble
96 A E -1.8509 Soluble
97 E E -2.2671 Soluble
98 D E 0.0000 Buried
99 A E -1.2430 Soluble
100 A E 0.0000 Buried
101 A E -0.8309 Soluble
102 Y E 0.0000 Buried
103 Y E 0.0000 Buried
104 C E 0.0000 Buried
105 H E 0.0000 Buried
106 Q E 0.0000 Buried
107 S E -0.0184 Soluble
108 S E -0.2759 Soluble
109 S E -0.2538 Soluble
114 L E -0.0414 Soluble
115 P E -0.4538 Soluble
116 F E 0.0000 Buried
117 T E -0.1097 Soluble
118 F E 0.0000 Buried
119 G E 0.0000 Buried
120 P E -0.9193 Soluble
121 G E -1.0315 Soluble
122 T E 0.0000 Buried
123 K E -1.4834 Soluble
124 V E 0.0000 Buried
125 D E 0.0000 Buried
126 I E -1.1857 Soluble
127 K E -1.5595 Soluble
128 R E -1.0047 Soluble
129 T E 0.0319 Aggregation-prone
130 V E 0.7432 Aggregation-prone
131 A E 0.2855 Aggregation-prone
132 A E -0.0622 Soluble
133 P E 0.0000 Buried
134 S E -0.1784 Soluble
135 V E 0.0000 Buried
136 F E 0.0752 Aggregation-prone
137 I E 0.1021 Aggregation-prone
138 F E 0.0000 Buried
139 P E -0.4147 Soluble
140 P E 0.0000 Buried
141 S E 0.0000 Buried
142 D E -2.7498 Soluble
143 E E -2.1108 Soluble
144 Q E 0.0000 Buried
145 L E -2.0605 Soluble
146 K E -2.6294 Soluble
147 S E -1.6678 Soluble
148 G E -1.4244 Soluble
149 T E -1.1433 Soluble
150 A E 0.0000 Buried
151 S E 0.0000 Buried
152 V E 0.0000 Buried
153 V E 0.0000 Buried
154 C E 0.0000 Buried
155 L E 0.0000 Buried
156 L E 0.0000 Buried
157 N E 0.0000 Buried
158 N E -0.8891 Soluble
159 F E 0.0000 Buried
160 Y E 0.0000 Buried
161 P E -1.2489 Soluble
162 R E -2.1187 Soluble
163 E E -2.6896 Soluble
164 A E -2.0462 Soluble
165 K E -2.2020 Soluble
166 V E -0.9763 Soluble
167 Q E -0.6979 Soluble
168 W E 0.0000 Buried
169 K E -0.5474 Soluble
170 V E 0.0000 Buried
171 D E -1.4194 Soluble
172 N E -1.4070 Soluble
173 A E -0.2361 Soluble
174 L E 0.4838 Aggregation-prone
175 Q E -0.4124 Soluble
176 S E -0.7642 Soluble
177 G E -1.1804 Soluble
178 N E -1.4092 Soluble
179 S E -1.2283 Soluble
180 Q E -0.9700 Soluble
181 E E -1.1505 Soluble
182 S E -0.3178 Soluble
183 V E -0.2061 Soluble
184 T E -0.9186 Soluble
185 E E -2.0942 Soluble
186 Q E -1.8532 Soluble
187 D E -2.1324 Soluble
188 S E -1.8039 Soluble
189 K E -2.3793 Soluble
190 D E -1.9869 Soluble
191 S E -1.9348 Soluble
192 T E 0.0000 Buried
193 Y E 0.0000 Buried
194 S E 0.0000 Buried
195 L E 0.0000 Buried
196 S E 0.0000 Buried
197 S E 0.0000 Buried
198 T E -0.5489 Soluble
199 L E 0.0000 Buried
200 T E -0.5454 Soluble
201 L E -0.7562 Soluble
202 S E -1.0710 Soluble
203 K E -2.1635 Soluble
204 A E -1.8918 Soluble
205 D E -2.4907 Soluble
206 Y E 0.0000 Buried
207 E E -3.4856 Soluble
208 K E -3.5138 Soluble
209 H E -2.8564 Soluble
210 K E -3.1464 Soluble
211 V E -1.4313 Soluble
212 Y E 0.0000 Buried
213 A E -0.5839 Soluble
214 C E 0.0000 Buried
215 E E -0.6633 Soluble
216 V E 0.0000 Buried
217 T E -1.1697 Soluble
218 H E 0.0000 Buried
219 Q E -1.3581 Soluble
220 G E -0.3165 Soluble
221 L E -0.1988 Soluble
222 S E -0.4748 Soluble
223 S E -0.4053 Soluble
224 P E -0.4823 Soluble
225 V E 0.0573 Aggregation-prone
226 T E -0.4534 Soluble
227 K E -0.7220 Soluble
228 S E -0.5305 Soluble
229 F E -0.7766 Soluble
230 N E -1.7299 Soluble
231 R E -2.3923 Soluble
232 G E -1.9551 Soluble
233 E E -2.1387 Soluble
234 C E -0.6774 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7289 1.999 CSV PDB
4.5 -0.7753 1.9823 CSV PDB
5.0 -0.8311 1.961 CSV PDB
5.5 -0.8854 1.9376 CSV PDB
6.0 -0.9258 1.9145 CSV PDB
6.5 -0.9424 1.8939 CSV PDB
7.0 -0.9345 1.8773 CSV PDB
7.5 -0.9097 1.8642 CSV PDB
8.0 -0.8749 1.8533 CSV PDB
8.5 -0.8328 1.8444 CSV PDB
9.0 -0.7836 1.9942 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH