Trabikibart / 5dwu

A4DAB275_5dwu_H_L | Source PDB: 5dwu | Chains: H, L | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.7233
Max Score
1.2972
Min Score
-3.9899
Total Score
-293.68
Score CDR
-0.2339
Score non-CDR
-0.7828

Calculation Parameters

Chain Sequence(s) VQLLESGGGLVQPGGSLRLSCAASGFTFPWYRVHWVRQAPGKGLEWVSSIRSSGGFPYYNYKVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFYDSFFDIWGQGTMVTVSSASTKGPSVFPLATAALGCLVKDYPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKDIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHSSPVTKSNR input.pdb
Selected Chain(s) H (Heavy), L (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.9899
Maximum Score 1.2972
Average Score -0.7233
Total Score -293.6801

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V H 1.1594 Aggregation-prone
3 Q H -0.1023 Soluble
4 L H 0.0000 Buried
5 L H 0.8320 Aggregation-prone
6 E H 0.1678 Aggregation-prone
7 S H -0.4974 Soluble
8 G H -0.8902 Soluble
9 G H -0.5937 Soluble
11 G H -0.2080 Soluble
12 L H 0.2789 Aggregation-prone
13 V H -0.4845 Soluble
14 Q H -1.5675 Soluble
15 P H -1.6351 Soluble
16 G H -1.5211 Soluble
17 G H -1.2252 Soluble
18 S H -1.4397 Soluble
19 L H -1.1575 Soluble
20 R H -2.2042 Soluble
21 L H 0.0000 Buried
22 S H -0.4287 Soluble
23 C H 0.0000 Buried
24 A H 0.0062 Aggregation-prone
25 A H 0.0461 Aggregation-prone
26 S H 0.1935 Aggregation-prone
27 G H 0.0486 Aggregation-prone
28 F H 0.4704 Aggregation-prone
29 T H 0.4027 Aggregation-prone
30 F H 0.1926 Aggregation-prone
35 P H 0.1314 Aggregation-prone
36 W H 0.3070 Aggregation-prone
37 Y H 0.0236 Aggregation-prone
38 R H -0.8796 Soluble
39 V H -0.1791 Soluble
40 H H 0.0000 Buried
41 W H 0.0000 Buried
42 V H 0.0000 Buried
43 R H -0.3639 Soluble
44 Q H -0.7152 Soluble
45 A H -1.1330 Soluble
46 P H -0.9093 Soluble
47 G H -1.4672 Soluble
48 K H -2.2254 Soluble
49 G H -1.4739 Soluble
50 L H -0.8848 Soluble
51 E H -0.9008 Soluble
52 W H 0.0000 Buried
53 V H 0.0000 Buried
54 S H 0.0000 Buried
55 S H 0.0000 Buried
56 I H 0.0000 Buried
57 R H -1.1913 Soluble
58 S H -1.1566 Soluble
59 S H -1.0898 Soluble
62 G H -1.1001 Soluble
63 G H -0.1740 Soluble
64 F H 1.2341 Aggregation-prone
65 P H 0.5345 Aggregation-prone
66 Y H 0.5218 Aggregation-prone
67 Y H -0.2326 Soluble
68 N H -0.7282 Soluble
69 Y H -0.3242 Soluble
70 K H -1.8976 Soluble
71 V H 0.0000 Buried
72 K H -2.1028 Soluble
74 G H -1.7343 Soluble
75 R H -1.7763 Soluble
76 F H 0.0000 Buried
77 T H -0.6882 Soluble
78 I H 0.0000 Buried
79 S H -1.0058 Soluble
80 R H -2.2035 Soluble
81 D H -2.3437 Soluble
82 N H -2.5602 Soluble
83 S H -2.0661 Soluble
84 K H -2.4353 Soluble
85 N H -1.9247 Soluble
86 T H -1.2851 Soluble
87 L H -0.8883 Soluble
88 Y H -0.5426 Soluble
89 L H 0.0000 Buried
90 Q H -1.5916 Soluble
91 M H 0.0000 Buried
92 N H -1.9912 Soluble
93 S H -1.5750 Soluble
94 L H 0.0000 Buried
95 R H -2.7438 Soluble
96 A H -1.9401 Soluble
97 E H -2.6013 Soluble
98 D H 0.0000 Buried
99 T H -0.8428 Soluble
100 A H 0.0000 Buried
101 V H 0.0017 Aggregation-prone
102 Y H 0.0000 Buried
103 Y H 0.0000 Buried
104 C H 0.0000 Buried
105 A H 0.0000 Buried
106 R H -0.3549 Soluble
107 F H 0.0000 Buried
108 Y H -0.5332 Soluble
109 D H -1.5710 Soluble
113 S H -0.5544 Soluble
114 F H 0.0000 Buried
115 F H 0.0000 Buried
116 D H -0.9287 Soluble
117 I H -0.1192 Soluble
118 W H 0.0000 Buried
119 G H 0.0000 Buried
120 Q H -1.4280 Soluble
121 G H -0.6490 Soluble
122 T H -0.2225 Soluble
123 M H 0.0020 Aggregation-prone
124 V H 0.0000 Buried
125 T H -0.2096 Soluble
126 V H 0.0000 Buried
127 S H -0.8607 Soluble
128 S H -0.6986 Soluble
129 A H -0.4765 Soluble
130 S H -0.6898 Soluble
131 T H -1.1445 Soluble
132 K H -2.0264 Soluble
133 G H -1.3762 Soluble
134 P H -0.6877 Soluble
135 S H -0.3522 Soluble
136 V H 0.5899 Aggregation-prone
137 F H 0.0000 Buried
138 P H 0.0241 Aggregation-prone
139 L H 0.0000 Buried
140 A H 0.1480 Aggregation-prone
141 T H -0.1194 Soluble
142 A H 0.1375 Aggregation-prone
143 A H 0.3506 Aggregation-prone
144 L H 0.4824 Aggregation-prone
145 G H 0.0000 Buried
146 C H 0.0000 Buried
147 L H 0.0000 Buried
148 V H 0.0000 Buried
149 K H -0.6286 Soluble
150 D H -1.0108 Soluble
151 Y H 0.0000 Buried
152 P H 0.0000 Buried
153 E H -0.4305 Soluble
154 P H -0.6962 Soluble
155 V H -0.5613 Soluble
156 T H -0.6414 Soluble
157 V H -0.5494 Soluble
158 S H -0.7021 Soluble
159 W H 0.0000 Buried
160 N H -0.7725 Soluble
161 S H -0.7951 Soluble
162 G H -0.6954 Soluble
163 A H -0.3058 Soluble
164 L H -0.1171 Soluble
165 T H -0.2740 Soluble
166 S H -0.2735 Soluble
167 G H -0.4325 Soluble
168 V H -0.0319 Soluble
169 H H -0.5369 Soluble
170 T H -0.1638 Soluble
171 F H 0.0000 Buried
172 P H -0.1527 Soluble
173 A H 0.4260 Aggregation-prone
174 V H 0.4628 Aggregation-prone
175 L H 1.0351 Aggregation-prone
176 Q H -0.2044 Soluble
177 S H -0.4863 Soluble
178 S H -0.3034 Soluble
179 G H -0.1329 Soluble
180 L H 0.0693 Aggregation-prone
181 Y H 0.4190 Aggregation-prone
182 S H 0.0276 Aggregation-prone
183 L H 0.0000 Buried
184 S H 0.0000 Buried
185 S H 0.0000 Buried
186 V H 0.0000 Buried
187 V H 0.0000 Buried
188 T H -0.1319 Soluble
189 V H 0.0000 Buried
190 P H -0.0267 Soluble
191 S H 0.0450 Aggregation-prone
192 S H 0.0060 Aggregation-prone
193 S H -0.0476 Soluble
194 L H 0.8290 Aggregation-prone
195 G H -0.3035 Soluble
196 T H -0.7444 Soluble
197 K H -1.5840 Soluble
198 T H -0.8156 Soluble
199 Y H -0.3514 Soluble
200 T H -0.5214 Soluble
201 C H -0.4960 Soluble
202 N H -1.4637 Soluble
203 V H 0.0000 Buried
204 D H -2.5948 Soluble
205 H H 0.0000 Buried
206 K H -2.8245 Soluble
207 P H -1.6828 Soluble
208 S H -2.0897 Soluble
209 N H -2.6063 Soluble
210 T H -2.2321 Soluble
211 K H -2.8294 Soluble
1 D L -1.9261 Soluble
2 I L -1.5106 Soluble
3 Q L -2.2277 Soluble
4 M L 0.0000 Buried
5 T L -1.3159 Soluble
6 Q L 0.0000 Buried
7 S L -0.6855 Soluble
8 P L -0.5607 Soluble
9 S L -0.8233 Soluble
10 S L -0.9120 Soluble
11 V L -0.6707 Soluble
12 S L -1.2153 Soluble
13 A L -1.1956 Soluble
14 S L -1.2618 Soluble
15 V L -0.5095 Soluble
16 G L -0.8723 Soluble
17 D L -1.5260 Soluble
18 R L -2.2454 Soluble
19 V L 0.0000 Buried
20 T L -0.4706 Soluble
21 I L 0.0000 Buried
22 T L -0.9146 Soluble
23 C L 0.0000 Buried
24 R L -2.8362 Soluble
25 A L -2.1189 Soluble
26 S L -1.8487 Soluble
27 Q L -2.1959 Soluble
28 G L -1.5637 Soluble
29 I L 0.0000 Buried
36 S L -0.4563 Soluble
37 S L -0.0089 Soluble
38 W L 0.4466 Aggregation-prone
39 L L 0.0000 Buried
40 A L 0.0000 Buried
41 W L 0.0000 Buried
42 Y L 0.0000 Buried
43 Q L -1.1095 Soluble
44 Q L 0.0000 Buried
45 K L -2.9132 Soluble
46 P L -1.9178 Soluble
47 G L -1.9472 Soluble
48 K L -2.8475 Soluble
49 A L -1.9719 Soluble
50 P L 0.0000 Buried
51 K L -1.9550 Soluble
52 L L 0.0000 Buried
53 L L 0.0000 Buried
54 I L 0.0000 Buried
55 Y L 0.4396 Aggregation-prone
56 A L 0.1851 Aggregation-prone
57 A L 0.0000 Buried
65 S L -0.1035 Soluble
66 S L 0.0686 Aggregation-prone
67 L L 0.2174 Aggregation-prone
68 Q L -0.3152 Soluble
69 S L -0.3853 Soluble
70 G L -0.4989 Soluble
71 V L -0.3243 Soluble
72 P L -0.3674 Soluble
74 S L -0.4779 Soluble
75 R L -0.8687 Soluble
76 F L 0.0000 Buried
77 S L -0.3179 Soluble
78 G L -0.1634 Soluble
79 S L -0.6366 Soluble
80 G L -0.9944 Soluble
83 S L -0.9285 Soluble
84 G L -1.3207 Soluble
85 T L -1.9858 Soluble
86 D L -2.5630 Soluble
87 F L 0.0000 Buried
88 T L -0.8523 Soluble
89 L L 0.0000 Buried
90 T L -0.5954 Soluble
91 I L 0.0000 Buried
92 S L -1.3319 Soluble
93 S L -1.2646 Soluble
94 L L 0.0000 Buried
95 Q L -1.3479 Soluble
96 P L -2.1593 Soluble
97 E L -2.7513 Soluble
98 D L 0.0000 Buried
99 F L -1.6977 Soluble
100 A L 0.0000 Buried
101 T L 0.0000 Buried
102 Y L 0.0000 Buried
103 Y L 0.0000 Buried
104 C L 0.0000 Buried
105 Q L 0.0000 Buried
106 Q L 0.0000 Buried
107 A L 0.0091 Aggregation-prone
108 N L -0.1453 Soluble
109 S L -0.0931 Soluble
114 F L 0.4518 Aggregation-prone
115 P L 0.0071 Aggregation-prone
116 I L 0.0000 Buried
117 T L -0.5166 Soluble
118 F L 0.0000 Buried
119 G L 0.0000 Buried
120 Q L -1.6149 Soluble
121 G L -1.2963 Soluble
122 T L 0.0000 Buried
123 R L -2.0013 Soluble
124 L L 0.0000 Buried
125 E L -1.6657 Soluble
126 I L 0.0000 Buried
127 K L -1.7960 Soluble
128 R L -1.0947 Soluble
129 T L 0.1250 Aggregation-prone
130 V L 1.2972 Aggregation-prone
131 A L 0.5140 Aggregation-prone
132 A L 0.0411 Aggregation-prone
133 P L -0.4227 Soluble
134 S L -0.2456 Soluble
135 V L 0.2494 Aggregation-prone
136 F L 0.4410 Aggregation-prone
137 I L 0.3932 Aggregation-prone
138 F L 0.0000 Buried
139 P L -0.4162 Soluble
140 P L -0.7014 Soluble
141 S L -1.6800 Soluble
142 D L -3.3253 Soluble
143 E L -3.3044 Soluble
144 Q L 0.0000 Buried
145 L L -2.4011 Soluble
146 K L -3.2439 Soluble
147 S L -2.0727 Soluble
148 G L -1.6192 Soluble
149 T L -1.2830 Soluble
150 A L 0.0000 Buried
151 S L -0.1814 Soluble
152 V L 0.0000 Buried
153 V L 0.0000 Buried
154 C L 0.0000 Buried
155 L L 0.0000 Buried
156 L L 0.0000 Buried
157 N L -0.5844 Soluble
158 N L -1.2397 Soluble
159 F L 0.0000 Buried
160 Y L -0.8080 Soluble
161 P L -1.5702 Soluble
162 R L -2.8731 Soluble
163 E L -3.2297 Soluble
164 A L -2.3795 Soluble
165 K L -2.5979 Soluble
166 V L -0.9971 Soluble
167 Q L -0.5537 Soluble
168 W L 0.0000 Buried
169 K L -1.0856 Soluble
170 V L 0.0000 Buried
171 D L -2.1725 Soluble
172 N L -1.6674 Soluble
173 A L -0.5549 Soluble
174 L L 0.4902 Aggregation-prone
175 Q L -0.6039 Soluble
176 S L -0.4948 Soluble
177 G L -1.1137 Soluble
178 N L -1.7869 Soluble
179 S L -1.6067 Soluble
180 Q L -1.4652 Soluble
181 E L -1.9745 Soluble
182 S L -0.6014 Soluble
183 V L -0.5371 Soluble
184 T L -0.7270 Soluble
185 E L -1.5185 Soluble
186 Q L 0.0000 Buried
187 D L -2.0392 Soluble
188 S L -2.4148 Soluble
189 K L -3.0492 Soluble
190 D L -2.6424 Soluble
191 S L 0.0000 Buried
192 T L 0.0000 Buried
193 Y L 0.0000 Buried
194 S L 0.0000 Buried
195 L L 0.0000 Buried
196 S L 0.0000 Buried
197 S L 0.0000 Buried
198 T L -0.8243 Soluble
199 L L 0.0000 Buried
200 T L -0.7174 Soluble
201 L L -0.9423 Soluble
202 S L -1.4988 Soluble
203 K L -2.7405 Soluble
204 A L -2.2549 Soluble
205 D L -3.0610 Soluble
206 Y L -2.8616 Soluble
207 E L -3.9899 Soluble
208 K L -3.7133 Soluble
209 H L -3.3574 Soluble
210 K L -3.6191 Soluble
211 V L -2.3570 Soluble
212 Y L -1.4323 Soluble
213 A L -1.0088 Soluble
214 C L 0.0000 Buried
215 E L -0.5997 Soluble
216 V L 0.0000 Buried
217 T L -1.1982 Soluble
218 H L -1.2327 Soluble
219 S L -0.2754 Soluble
220 S L -0.4216 Soluble
221 P L -0.0644 Soluble
222 V L 0.6732 Aggregation-prone
223 T L 0.0089 Aggregation-prone
224 K L -0.5292 Soluble
225 S L -0.8498 Soluble
226 N L -2.7417 Soluble
227 R L -3.1867 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7843 3.7125 CSV PDB
4.5 -0.8248 3.7125 CSV PDB
5.0 -0.8713 3.7125 CSV PDB
5.5 -0.9121 3.7125 CSV PDB
6.0 -0.9347 3.7125 CSV PDB
6.5 -0.9319 3.7125 CSV PDB
7.0 -0.9075 3.7125 CSV PDB
7.5 -0.8712 3.7125 CSV PDB
8.0 -0.8292 3.7125 CSV PDB
8.5 -0.783 3.7125 CSV PDB
9.0 -0.7315 3.7124 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH