Lampalizumab / 4d9r

A4DAB150_4d9r_E_D | Source PDB: 4d9r | Chains: E, D | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6927
Max Score
1.2458
Min Score
-3.5961
Total Score
-297.19
Score CDR
-0.7066
Score non-CDR
-0.6912

Calculation Parameters

Chain Sequence(s) EVQLVQSGPELKKPGASVKVSCKASGYTFTNYGMNWVRQAPGQGLEWMGWINTYTGETTYADDFKGRFVFSLDTSVSTAYLQISSLKAEDTAVYYCEREGGVNNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKDIQVTQSPSSLSASVGDRVTITCITSTDIDDDMNWYQQKPGKVPKLLISGGNTLRPGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQSDSLPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE input.pdb
Selected Chain(s) E (Heavy), D (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.5961
Maximum Score 1.2458
Average Score -0.6927
Total Score -297.1882

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 E E -2.1248 Soluble
2 V E -1.1853 Soluble
3 Q E -1.3942 Soluble
4 L E 0.0000 Buried
5 V E 0.8417 Aggregation-prone
6 Q E 0.0000 Buried
7 S E -0.4409 Soluble
8 G E -0.7400 Soluble
9 P E 0.0000 Buried
11 E E -1.8774 Soluble
12 L E -1.1814 Soluble
13 K E -1.8387 Soluble
14 K E -2.3562 Soluble
15 P E -1.9277 Soluble
16 G E -1.4305 Soluble
17 A E -1.2225 Soluble
18 S E -1.3247 Soluble
19 V E 0.0000 Buried
20 K E -1.8628 Soluble
21 V E 0.0000 Buried
22 S E -0.4115 Soluble
23 C E 0.0000 Buried
24 K E -0.2638 Soluble
25 A E 0.0000 Buried
26 S E -0.7162 Soluble
27 G E -1.2576 Soluble
28 Y E -0.6745 Soluble
29 T E -0.4153 Soluble
30 F E 0.0000 Buried
35 T E -0.1398 Soluble
36 N E -0.9522 Soluble
37 Y E -0.3813 Soluble
38 G E 0.0000 Buried
39 M E 0.0000 Buried
40 N E 0.0000 Buried
41 W E 0.0000 Buried
42 V E 0.0000 Buried
43 R E -0.5468 Soluble
44 Q E -0.7510 Soluble
45 A E 0.0000 Buried
46 P E -1.0300 Soluble
47 G E -1.2217 Soluble
48 Q E -1.8780 Soluble
49 G E -1.4136 Soluble
50 L E 0.0000 Buried
51 E E -1.3012 Soluble
52 W E 0.0000 Buried
53 M E 0.0000 Buried
54 G E 0.0000 Buried
55 W E -0.1053 Soluble
56 I E 0.0000 Buried
57 N E -0.7296 Soluble
58 T E 0.0000 Buried
59 Y E 0.6012 Aggregation-prone
62 T E -0.2764 Soluble
63 G E -0.9319 Soluble
64 E E -1.9022 Soluble
65 T E -0.7450 Soluble
66 T E -0.5602 Soluble
67 Y E -0.9462 Soluble
68 A E -1.9576 Soluble
69 D E -3.5388 Soluble
70 D E -3.2904 Soluble
71 F E 0.0000 Buried
72 K E -2.8295 Soluble
74 G E -1.7154 Soluble
75 R E -1.1184 Soluble
76 F E 0.0000 Buried
77 V E 0.5520 Aggregation-prone
78 F E 0.0000 Buried
79 S E -0.2007 Soluble
80 L E 0.0211 Aggregation-prone
81 D E -0.5527 Soluble
82 T E -0.0731 Soluble
83 S E 0.0180 Aggregation-prone
84 V E 0.5293 Aggregation-prone
85 S E -0.0412 Soluble
86 T E 0.0000 Buried
87 A E 0.0000 Buried
88 Y E -0.2185 Soluble
89 L E 0.0000 Buried
90 Q E -0.6513 Soluble
91 I E 0.0000 Buried
92 S E -0.8744 Soluble
93 S E -1.0919 Soluble
94 L E 0.0000 Buried
95 K E -2.1525 Soluble
96 A E -1.7014 Soluble
97 E E -2.1753 Soluble
98 D E 0.0000 Buried
99 T E -0.9091 Soluble
100 A E 0.0000 Buried
101 V E 0.1806 Aggregation-prone
102 Y E 0.0000 Buried
103 Y E 0.0000 Buried
104 C E 0.0000 Buried
105 E E 0.0000 Buried
106 R E 0.0000 Buried
107 E E -0.5105 Soluble
108 G E -0.3698 Soluble
114 G E 0.2219 Aggregation-prone
115 V E 1.2458 Aggregation-prone
116 N E 0.0680 Aggregation-prone
117 N E -0.3606 Soluble
118 W E -0.3335 Soluble
119 G E 0.0000 Buried
120 Q E -1.0313 Soluble
121 G E -0.3790 Soluble
122 T E 0.0000 Buried
123 L E -0.2695 Soluble
124 V E 0.0000 Buried
125 T E 0.0000 Buried
126 V E 0.0000 Buried
127 S E -1.0605 Soluble
128 S E -0.9622 Soluble
129 A E -0.6197 Soluble
130 S E -0.6895 Soluble
131 T E -0.8096 Soluble
132 K E -1.1747 Soluble
133 G E -1.2598 Soluble
134 P E 0.0000 Buried
135 S E -0.2678 Soluble
136 V E 0.0000 Buried
137 F E 0.0000 Buried
138 P E -1.1312 Soluble
139 L E 0.0000 Buried
140 A E -1.3560 Soluble
141 P E 0.0000 Buried
142 S E -1.3311 Soluble
143 S E -1.0639 Soluble
144 K E -1.0358 Soluble
145 S E 0.0000 Buried
146 T E -0.6509 Soluble
147 S E -0.6819 Soluble
148 G E -0.8188 Soluble
149 G E -0.8885 Soluble
150 T E -0.6140 Soluble
151 A E 0.0000 Buried
152 A E 0.0000 Buried
153 L E 0.0000 Buried
154 G E 0.0000 Buried
155 C E 0.0000 Buried
156 L E 0.0000 Buried
157 V E 0.0000 Buried
158 K E 0.0000 Buried
159 D E -0.3844 Soluble
160 Y E 0.0000 Buried
161 F E 0.0000 Buried
162 P E 0.0000 Buried
163 E E -0.4698 Soluble
164 P E -0.5874 Soluble
165 V E -0.4655 Soluble
166 T E -0.4640 Soluble
167 V E -0.1859 Soluble
168 S E -0.4120 Soluble
169 W E 0.0000 Buried
170 N E -0.7452 Soluble
171 S E -0.6644 Soluble
172 G E -0.5197 Soluble
173 A E -0.2240 Soluble
174 L E -0.0041 Soluble
175 T E -0.1562 Soluble
176 S E -0.1740 Soluble
177 G E -0.1986 Soluble
178 V E 0.1944 Aggregation-prone
179 H E -0.2301 Soluble
180 T E -0.0091 Soluble
181 F E 0.0000 Buried
182 P E -0.2655 Soluble
183 A E 0.2554 Aggregation-prone
184 V E 0.6170 Aggregation-prone
185 L E 1.1159 Aggregation-prone
186 Q E 0.2596 Aggregation-prone
187 S E -0.0935 Soluble
188 S E -0.1969 Soluble
189 G E 0.0790 Aggregation-prone
190 L E 0.1700 Aggregation-prone
191 Y E 0.4729 Aggregation-prone
192 S E 0.0000 Buried
193 L E 0.0000 Buried
194 S E 0.0000 Buried
195 S E 0.0000 Buried
196 V E 0.0000 Buried
197 V E 0.0000 Buried
198 T E -0.1286 Soluble
199 V E 0.0000 Buried
200 P E -0.5161 Soluble
201 S E -0.5696 Soluble
202 S E -0.5644 Soluble
203 S E -0.6197 Soluble
204 L E -0.7925 Soluble
205 G E -1.1110 Soluble
206 T E -0.7827 Soluble
207 Q E -1.3949 Soluble
208 T E -1.2643 Soluble
209 Y E 0.0000 Buried
210 I E -1.3269 Soluble
211 C E 0.0000 Buried
212 N E -1.5092 Soluble
213 V E 0.0000 Buried
214 N E -1.7821 Soluble
215 H E 0.0000 Buried
216 K E -2.3320 Soluble
217 P E -1.6052 Soluble
218 S E -1.7535 Soluble
219 N E -2.3262 Soluble
220 T E -1.9305 Soluble
221 K E -2.6413 Soluble
222 V E -1.7787 Soluble
223 D E -2.4688 Soluble
224 K E -2.1832 Soluble
225 K E -2.6189 Soluble
226 V E 0.0000 Buried
227 E E -2.9448 Soluble
228 P E -2.1433 Soluble
229 K E -2.6692 Soluble
1 D D -2.2390 Soluble
2 I D -1.5391 Soluble
3 Q D -1.5013 Soluble
4 V D 0.0000 Buried
5 T D -0.5718 Soluble
6 Q D 0.0000 Buried
7 S D -0.3459 Soluble
8 P D -0.4942 Soluble
9 S D -0.6568 Soluble
10 S D -0.5008 Soluble
11 L D -0.3689 Soluble
12 S D -0.9127 Soluble
13 A D -1.0639 Soluble
14 S D -0.9092 Soluble
15 V D 0.1143 Aggregation-prone
16 G D -0.8195 Soluble
17 D D -1.8376 Soluble
18 R D -2.3616 Soluble
19 V D 0.0000 Buried
20 T D -0.6576 Soluble
21 I D 0.0000 Buried
22 T D -0.3496 Soluble
23 C D 0.0000 Buried
24 I D -0.3980 Soluble
25 T D 0.0000 Buried
26 S D -1.2023 Soluble
27 T D -1.5776 Soluble
28 D D -2.8995 Soluble
29 I D 0.0000 Buried
36 D D -3.5961 Soluble
37 D D -3.2505 Soluble
38 D D -2.6237 Soluble
39 M D 0.0000 Buried
40 N D 0.0000 Buried
41 W D 0.0000 Buried
42 Y D 0.0000 Buried
43 Q D 0.0000 Buried
44 Q D 0.0000 Buried
45 K D -1.5985 Soluble
46 P D -1.3862 Soluble
47 G D -1.5736 Soluble
48 K D -2.2370 Soluble
49 V D -1.0882 Soluble
50 P D 0.0000 Buried
51 K D -1.0883 Soluble
52 L D -0.1013 Soluble
53 L D 0.0000 Buried
54 I D 0.0000 Buried
55 S D -0.5143 Soluble
56 G D -1.4813 Soluble
57 G D -1.5324 Soluble
65 N D -0.9479 Soluble
66 T D -0.2905 Soluble
67 L D 0.1956 Aggregation-prone
68 R D -0.1357 Soluble
69 P D -0.2222 Soluble
70 G D -0.6179 Soluble
71 V D 0.0000 Buried
72 P D -0.4051 Soluble
74 S D -0.4115 Soluble
75 R D -0.7057 Soluble
76 F D 0.0000 Buried
77 S D -0.2740 Soluble
78 G D -0.3907 Soluble
79 S D -1.0102 Soluble
80 G D -1.5797 Soluble
83 S D -2.3737 Soluble
84 G D -2.4251 Soluble
85 T D -1.9742 Soluble
86 D D -2.2413 Soluble
87 F D 0.0000 Buried
88 T D -0.5788 Soluble
89 L D 0.0000 Buried
90 T D -0.6325 Soluble
91 I D 0.0000 Buried
92 S D -1.3616 Soluble
93 S D -1.1394 Soluble
94 L D 0.0000 Buried
95 Q D -0.8620 Soluble
96 P D -1.5439 Soluble
97 E D -1.9837 Soluble
98 D D 0.0000 Buried
99 V D 0.0000 Buried
100 A D 0.0000 Buried
101 T D -0.6259 Soluble
102 Y D 0.0000 Buried
103 Y D 0.0000 Buried
104 C D 0.0000 Buried
105 L D 0.0000 Buried
106 Q D 0.0000 Buried
107 S D -0.8915 Soluble
108 D D -1.7823 Soluble
109 S D -0.5438 Soluble
114 L D 0.2609 Aggregation-prone
115 P D -0.2904 Soluble
116 Y D -0.2634 Soluble
117 T D -0.7481 Soluble
118 F D 0.0000 Buried
119 G D 0.0000 Buried
120 Q D -1.6251 Soluble
121 G D 0.0000 Buried
122 T D 0.0000 Buried
123 K D -0.8831 Soluble
124 V D 0.0000 Buried
125 E D -1.1834 Soluble
126 I D 0.0000 Buried
127 K D -1.2366 Soluble
128 R D -0.8015 Soluble
129 T D -0.0144 Soluble
130 V D 0.5032 Aggregation-prone
131 A D 0.2054 Aggregation-prone
132 A D -0.0487 Soluble
133 P D 0.0000 Buried
134 S D -0.1218 Soluble
135 V D -0.1643 Soluble
136 F D 0.0000 Buried
137 I D 0.0000 Buried
138 F D 0.0000 Buried
139 P D -0.7486 Soluble
140 P D -0.8215 Soluble
141 S D 0.0000 Buried
142 D D -3.0001 Soluble
143 E D -3.0193 Soluble
144 Q D 0.0000 Buried
145 L D -2.2563 Soluble
146 K D -2.8521 Soluble
147 S D -1.7746 Soluble
148 G D -1.3112 Soluble
149 T D -1.0660 Soluble
150 A D 0.0000 Buried
151 S D 0.0000 Buried
152 V D 0.0000 Buried
153 V D 0.0000 Buried
154 C D 0.0000 Buried
155 L D 0.0000 Buried
156 L D 0.0000 Buried
157 N D 0.0000 Buried
158 N D -0.8491 Soluble
159 F D 0.0000 Buried
160 Y D 0.0000 Buried
161 P D -1.5895 Soluble
162 R D -2.7674 Soluble
163 E D -3.1451 Soluble
164 A D -2.2417 Soluble
165 K D -2.5582 Soluble
166 V D -1.0856 Soluble
167 Q D -0.7402 Soluble
168 W D 0.0000 Buried
169 K D -0.3588 Soluble
170 V D 0.0000 Buried
171 D D -1.4628 Soluble
172 N D -1.2361 Soluble
173 A D -0.0475 Soluble
174 L D 0.8561 Aggregation-prone
175 Q D -0.0221 Soluble
176 S D -0.3801 Soluble
177 G D -0.8355 Soluble
178 N D -0.7410 Soluble
179 S D -0.8951 Soluble
180 Q D -0.9329 Soluble
181 E D -1.4578 Soluble
182 S D -0.5582 Soluble
183 V D -0.5490 Soluble
184 T D -0.7467 Soluble
185 E D -1.4181 Soluble
186 Q D 0.0000 Buried
187 D D -1.7707 Soluble
188 S D -2.0957 Soluble
189 K D -2.5614 Soluble
190 D D -1.8949 Soluble
191 S D 0.0000 Buried
192 T D 0.0000 Buried
193 Y D 0.0000 Buried
194 S D 0.0000 Buried
195 L D 0.0000 Buried
196 S D 0.0000 Buried
197 S D 0.0000 Buried
198 T D -0.4901 Soluble
199 L D 0.0000 Buried
200 T D -0.4113 Soluble
201 L D -0.6432 Soluble
202 S D -1.2283 Soluble
203 K D -2.1374 Soluble
204 A D -1.8935 Soluble
205 D D -2.4949 Soluble
206 Y D 0.0000 Buried
207 E D -3.3490 Soluble
208 K D -3.5406 Soluble
209 H D -2.8583 Soluble
210 K D -3.0627 Soluble
211 V D -1.3167 Soluble
212 Y D 0.0000 Buried
213 A D 0.0000 Buried
214 C D 0.0000 Buried
215 E D -0.8890 Soluble
216 V D 0.0000 Buried
217 T D -1.2288 Soluble
218 H D 0.0000 Buried
219 Q D -1.6811 Soluble
220 G D -0.3738 Soluble
221 L D -0.2075 Soluble
222 S D -0.4382 Soluble
223 S D -0.3829 Soluble
224 P D -0.5483 Soluble
225 V D 0.1355 Aggregation-prone
226 T D -0.3986 Soluble
227 K D -0.7460 Soluble
228 S D -0.7685 Soluble
229 F D 0.0000 Buried
230 N D -2.3700 Soluble
231 R D -2.7843 Soluble
232 G D -2.1580 Soluble
233 E D -2.6726 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6313 1.9717 CSV PDB
4.5 -0.6849 1.9717 CSV PDB
5.0 -0.7476 1.9717 CSV PDB
5.5 -0.8085 1.9717 CSV PDB
6.0 -0.8553 1.9717 CSV PDB
6.5 -0.878 1.9717 CSV PDB
7.0 -0.876 1.9717 CSV PDB
7.5 -0.8575 1.9717 CSV PDB
8.0 -0.8295 1.9717 CSV PDB
8.5 -0.7936 1.9717 CSV PDB
9.0 -0.7491 1.9717 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH