Dacetuzumab / 8yx9

A4DAB078_8yx9_B_C | Source PDB: 8yx9 | Chains: B, C | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6821
Max Score
1.5623
Min Score
-3.4386
Total Score
-291.92
Score CDR
-0.3826
Score non-CDR
-0.7181

Calculation Parameters

Chain Sequence(s) VQLVESGGGLVQPGGSLRLSCAASGYSFTGYYIHWVRQAPGKGLEWVARVIPNAGGTSYNQKFKGRFTLSVDNSKNTAYLQMNSLRAEDTAVYYCAREGIYWWGQGTLVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSDIQMTQSPSSLSASVGDRVTITCRSSQSLVHSNGNTFLHWYQQKPGKAPKLLIYTVSNRFSGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCSQTTHVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG input.pdb
Selected Chain(s) B (Heavy), C (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.4386
Maximum Score 1.5623
Average Score -0.6821
Total Score -291.9207

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
2 V B 0.3370 Aggregation-prone
3 Q B -0.5407 Soluble
4 L B 0.0000 Buried
5 V B 0.4249 Aggregation-prone
6 E B 0.0000 Buried
7 S B -0.3951 Soluble
8 G B -0.8146 Soluble
9 G B -0.2682 Soluble
11 G B -0.0906 Soluble
12 L B 0.2023 Aggregation-prone
13 V B -0.5222 Soluble
14 Q B -1.5356 Soluble
15 P B -1.5832 Soluble
16 G B -1.3276 Soluble
17 G B -0.9528 Soluble
18 S B -0.9733 Soluble
19 L B -0.8138 Soluble
20 R B -1.6604 Soluble
21 L B 0.0000 Buried
22 S B -0.2563 Soluble
23 C B 0.0000 Buried
24 A B -0.4016 Soluble
25 A B 0.0000 Buried
26 S B -0.5553 Soluble
27 G B -0.2935 Soluble
28 Y B -0.0982 Soluble
29 S B -0.2114 Soluble
30 F B 0.0000 Buried
35 T B -0.7977 Soluble
36 G B -0.4416 Soluble
37 Y B 0.0322 Aggregation-prone
38 Y B -0.1392 Soluble
39 I B 0.0000 Buried
40 H B 0.0000 Buried
41 W B 0.0000 Buried
42 V B 0.0000 Buried
43 R B 0.0000 Buried
44 Q B -0.7522 Soluble
45 A B -1.2296 Soluble
46 P B -1.3257 Soluble
47 G B -1.6161 Soluble
48 K B -2.4819 Soluble
49 G B -1.7971 Soluble
50 L B 0.0000 Buried
51 E B -0.7332 Soluble
52 W B 0.0000 Buried
53 V B 0.0000 Buried
54 A B 0.0000 Buried
55 R B -0.1875 Soluble
56 V B 0.0000 Buried
57 I B -0.2602 Soluble
58 P B 0.0000 Buried
59 N B -1.4479 Soluble
62 A B -0.7201 Soluble
63 G B -0.9426 Soluble
64 G B -0.5928 Soluble
65 T B -0.1927 Soluble
66 S B -0.3412 Soluble
67 Y B -0.9725 Soluble
68 N B 0.0000 Buried
69 Q B -2.5962 Soluble
70 K B -2.8449 Soluble
71 F B 0.0000 Buried
72 K B -2.8456 Soluble
74 G B -1.9748 Soluble
75 R B -1.5450 Soluble
76 F B 0.0000 Buried
77 T B -0.7886 Soluble
78 L B 0.0000 Buried
79 S B 0.1437 Aggregation-prone
80 V B -0.3990 Soluble
81 D B -1.4582 Soluble
82 N B -2.1809 Soluble
83 S B -1.8029 Soluble
84 K B -2.5140 Soluble
85 N B -1.9712 Soluble
86 T B 0.0000 Buried
87 A B 0.0000 Buried
88 Y B -0.1811 Soluble
89 L B 0.0000 Buried
90 Q B -0.9892 Soluble
91 M B 0.0000 Buried
92 N B -1.1993 Soluble
93 S B -1.1738 Soluble
94 L B 0.0000 Buried
95 R B -2.1401 Soluble
96 A B -1.6625 Soluble
97 E B -2.2130 Soluble
98 D B 0.0000 Buried
99 T B -0.6728 Soluble
100 A B 0.0000 Buried
101 V B 0.3005 Aggregation-prone
102 Y B 0.0000 Buried
103 Y B 0.0000 Buried
104 C B 0.0000 Buried
105 A B 0.0000 Buried
106 R B -0.2175 Soluble
107 E B -0.5279 Soluble
108 G B -0.3499 Soluble
115 I B 0.1779 Aggregation-prone
116 Y B 0.3056 Aggregation-prone
117 W B 0.2707 Aggregation-prone
118 W B -0.2880 Soluble
119 G B -0.6741 Soluble
120 Q B -1.2317 Soluble
121 G B -0.3440 Soluble
122 T B -0.0253 Soluble
123 L B 0.3380 Aggregation-prone
124 V B 0.0000 Buried
125 T B -0.3105 Soluble
126 V B 0.0000 Buried
127 S B -0.8689 Soluble
128 S B -0.6626 Soluble
129 A B -0.3938 Soluble
130 S B -0.5259 Soluble
131 T B -0.6098 Soluble
132 K B -1.0442 Soluble
133 G B -1.3807 Soluble
134 P B 0.0000 Buried
135 S B -0.3225 Soluble
136 V B 0.0000 Buried
137 F B -0.3526 Soluble
138 P B -0.9100 Soluble
139 L B 0.0000 Buried
140 A B -1.1433 Soluble
141 P B 0.0000 Buried
142 S B -0.8253 Soluble
143 S B -0.5343 Soluble
144 G B -0.8166 Soluble
145 G B -0.8451 Soluble
146 T B -0.5340 Soluble
147 A B -0.3214 Soluble
148 A B 0.0000 Buried
149 L B 0.0000 Buried
150 G B 0.0000 Buried
151 C B 0.0000 Buried
152 L B 0.0000 Buried
153 V B 0.0000 Buried
154 K B 0.0000 Buried
155 D B -0.2607 Soluble
156 Y B 0.0000 Buried
157 F B -0.0502 Soluble
158 P B 0.0000 Buried
159 E B -0.6263 Soluble
160 P B -0.7712 Soluble
161 V B 0.0000 Buried
162 T B -0.8006 Soluble
163 V B -0.3847 Soluble
164 S B -0.4380 Soluble
165 W B 0.0000 Buried
166 N B -0.7249 Soluble
167 S B -0.5885 Soluble
168 G B -0.5364 Soluble
169 A B -0.2295 Soluble
170 L B -0.0753 Soluble
171 T B -0.2149 Soluble
172 S B -0.2571 Soluble
173 G B -0.2493 Soluble
174 V B 0.0746 Aggregation-prone
175 H B -0.3070 Soluble
176 T B -0.0414 Soluble
177 F B 0.0000 Buried
178 P B -0.5456 Soluble
179 A B 0.1805 Aggregation-prone
180 V B 0.5994 Aggregation-prone
181 L B 1.5623 Aggregation-prone
182 Q B 0.4354 Aggregation-prone
183 S B -0.0283 Soluble
184 S B -0.1798 Soluble
185 G B 0.1168 Aggregation-prone
186 L B 0.3947 Aggregation-prone
187 Y B 0.7412 Aggregation-prone
188 S B 0.3631 Aggregation-prone
189 L B 0.0000 Buried
190 S B 0.0000 Buried
191 S B 0.0000 Buried
192 V B 0.0000 Buried
193 V B 0.0000 Buried
194 T B -0.1409 Soluble
195 V B 0.0000 Buried
196 P B -0.5261 Soluble
197 S B -0.6317 Soluble
198 S B -0.6669 Soluble
199 S B -0.5325 Soluble
200 L B -0.7853 Soluble
201 G B -1.0511 Soluble
202 T B -0.6878 Soluble
203 Q B -1.1419 Soluble
204 T B -1.1548 Soluble
205 Y B 0.0000 Buried
206 I B -1.2892 Soluble
207 C B 0.0000 Buried
208 N B -1.4968 Soluble
209 V B 0.0000 Buried
210 N B -2.4062 Soluble
211 H B 0.0000 Buried
212 K B -2.8864 Soluble
213 P B -1.6004 Soluble
214 S B -1.8429 Soluble
215 N B -2.6801 Soluble
216 T B -2.1813 Soluble
217 K B -2.8532 Soluble
218 V B -1.5709 Soluble
219 D B -2.2261 Soluble
220 K B -1.8787 Soluble
221 K B -2.5581 Soluble
222 V B 0.0000 Buried
223 E B -2.9362 Soluble
224 P B -2.0492 Soluble
225 K B -2.4042 Soluble
226 S B -1.3413 Soluble
1 D C -2.2002 Soluble
2 I C 0.0000 Buried
3 Q C -2.0188 Soluble
4 M C 0.0000 Buried
5 T C -1.2021 Soluble
6 Q C 0.0000 Buried
7 S C -0.6809 Soluble
8 P C -0.7261 Soluble
9 S C -1.0304 Soluble
10 S C -1.0957 Soluble
11 L C -0.7917 Soluble
12 S C -1.1175 Soluble
13 A C -1.2068 Soluble
14 S C -1.1365 Soluble
15 V C -0.5261 Soluble
16 G C -0.9926 Soluble
17 D C -2.0446 Soluble
18 R C -2.5006 Soluble
19 V C 0.0000 Buried
20 T C -0.6477 Soluble
21 I C 0.0000 Buried
22 T C -0.6774 Soluble
23 C C 0.0000 Buried
24 R C -2.0572 Soluble
25 S C 0.0000 Buried
26 S C -1.6691 Soluble
27 Q C -1.4748 Soluble
28 S C -0.6236 Soluble
29 L C 0.0000 Buried
30 V C 0.0277 Aggregation-prone
31 H C -0.8756 Soluble
32 S C -1.0763 Soluble
34 N C -1.7834 Soluble
35 G C -1.3677 Soluble
36 N C -1.1666 Soluble
37 T C -0.2776 Soluble
38 F C 0.1301 Aggregation-prone
39 L C 0.0000 Buried
40 H C 0.0000 Buried
41 W C 0.0000 Buried
42 Y C 0.0000 Buried
43 Q C 0.0000 Buried
44 Q C -1.4585 Soluble
45 K C -1.9024 Soluble
46 P C -1.5603 Soluble
47 G C -1.6233 Soluble
48 K C -2.5551 Soluble
49 A C -1.6728 Soluble
50 P C 0.0000 Buried
51 K C -1.7037 Soluble
52 L C 0.0000 Buried
53 L C 0.0000 Buried
54 I C 0.0000 Buried
55 Y C 0.2131 Aggregation-prone
56 T C -0.1050 Soluble
57 V C 0.0000 Buried
65 S C -0.7684 Soluble
66 N C -1.0605 Soluble
67 R C -1.0230 Soluble
68 F C -0.2293 Soluble
69 S C -0.3907 Soluble
70 G C -0.4890 Soluble
71 V C -0.4545 Soluble
72 P C -0.4135 Soluble
74 S C -0.5642 Soluble
75 R C -0.8918 Soluble
76 F C 0.0000 Buried
77 S C -0.5670 Soluble
78 G C 0.0000 Buried
79 S C -0.7519 Soluble
80 G C -1.0564 Soluble
83 S C -0.8108 Soluble
84 G C -0.7285 Soluble
85 T C -1.2983 Soluble
86 D C -2.0274 Soluble
87 F C 0.0000 Buried
88 T C -0.6680 Soluble
89 L C 0.0000 Buried
90 T C -0.6240 Soluble
91 I C 0.0000 Buried
92 S C -1.5493 Soluble
93 S C -1.3295 Soluble
94 L C 0.0000 Buried
95 Q C -1.0803 Soluble
96 P C -1.6868 Soluble
97 E C -1.9641 Soluble
98 D C 0.0000 Buried
99 F C 0.0000 Buried
100 A C 0.0000 Buried
101 T C -1.1637 Soluble
102 Y C 0.0000 Buried
103 F C 0.0000 Buried
104 C C 0.0000 Buried
105 S C 0.0000 Buried
106 Q C 0.0000 Buried
107 T C -0.0509 Soluble
108 T C -0.0966 Soluble
109 H C -0.4373 Soluble
114 V C -0.0063 Soluble
115 P C -0.4430 Soluble
116 W C 0.0000 Buried
117 T C -0.7582 Soluble
118 F C -0.4718 Soluble
119 G C -1.0185 Soluble
120 Q C -1.7807 Soluble
121 G C -1.4085 Soluble
122 T C 0.0000 Buried
123 K C -2.1507 Soluble
124 V C 0.0000 Buried
125 E C -1.9039 Soluble
126 I C 0.0000 Buried
127 K C -1.4286 Soluble
128 R C -0.9528 Soluble
129 T C -0.0592 Soluble
130 V C 0.4566 Aggregation-prone
131 A C -0.0134 Soluble
132 A C -0.0561 Soluble
133 P C 0.0000 Buried
134 S C -0.0814 Soluble
135 V C 0.0000 Buried
136 F C 0.0626 Aggregation-prone
137 I C 0.0938 Aggregation-prone
138 F C 0.0000 Buried
139 P C -0.4880 Soluble
140 P C 0.0000 Buried
141 S C -1.5821 Soluble
142 D C -2.6721 Soluble
143 E C -2.3881 Soluble
144 Q C 0.0000 Buried
145 L C -2.1272 Soluble
146 K C -2.6702 Soluble
147 S C -1.6573 Soluble
148 G C -1.2110 Soluble
149 T C -0.8770 Soluble
150 A C 0.0000 Buried
151 S C 0.0000 Buried
152 V C 0.0000 Buried
153 V C 0.0000 Buried
154 C C 0.0000 Buried
155 L C 0.0000 Buried
156 L C 0.0000 Buried
157 N C 0.0000 Buried
158 N C -0.8136 Soluble
159 F C 0.0000 Buried
160 Y C 0.0000 Buried
161 P C -1.6964 Soluble
162 R C -2.9762 Soluble
163 E C -3.1915 Soluble
164 A C -2.2631 Soluble
165 K C -2.2432 Soluble
166 V C -0.9769 Soluble
167 Q C -0.4635 Soluble
168 W C 0.0000 Buried
169 K C -0.5577 Soluble
170 V C 0.0000 Buried
171 D C -1.7973 Soluble
172 N C -1.3307 Soluble
173 A C -0.3316 Soluble
174 L C 0.7083 Aggregation-prone
175 Q C -0.0270 Soluble
176 S C -0.4501 Soluble
177 G C -0.8302 Soluble
178 N C -0.6998 Soluble
179 S C -0.9549 Soluble
180 Q C -1.1566 Soluble
181 E C -1.8730 Soluble
182 S C -0.9971 Soluble
183 V C -0.8392 Soluble
184 T C 0.0000 Buried
185 E C -1.9753 Soluble
186 Q C 0.0000 Buried
187 D C -1.9472 Soluble
188 S C -2.0833 Soluble
189 K C -2.4790 Soluble
190 D C -1.7443 Soluble
191 S C 0.0000 Buried
192 T C 0.0000 Buried
193 Y C 0.0000 Buried
194 S C 0.0000 Buried
195 L C 0.0000 Buried
196 S C 0.0000 Buried
197 S C 0.0000 Buried
198 T C -0.5660 Soluble
199 L C 0.0000 Buried
200 T C -0.3769 Soluble
201 L C -0.6137 Soluble
202 S C -1.0333 Soluble
203 K C -2.0067 Soluble
204 A C -1.7772 Soluble
205 D C -2.3996 Soluble
206 Y C 0.0000 Buried
207 E C -3.3157 Soluble
208 K C -3.4386 Soluble
209 H C -2.9077 Soluble
210 K C -3.0128 Soluble
211 V C -1.5520 Soluble
212 Y C 0.0000 Buried
213 A C 0.0000 Buried
214 C C 0.0000 Buried
215 E C -0.5973 Soluble
216 V C 0.0000 Buried
217 T C -1.0900 Soluble
218 H C 0.0000 Buried
219 Q C -1.7202 Soluble
220 G C -0.3707 Soluble
221 L C -0.1814 Soluble
222 S C -0.4349 Soluble
223 S C -0.3890 Soluble
224 P C -0.4483 Soluble
225 V C 0.1673 Aggregation-prone
226 T C -0.3760 Soluble
227 K C -0.6553 Soluble
228 S C -0.5878 Soluble
229 F C -0.7901 Soluble
230 N C -1.8321 Soluble
231 R C -2.1434 Soluble
232 G C -1.2260 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
Load structure to view sequence…
Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.7635 1.7567 CSV PDB
4.5 -0.7957 1.7462 CSV PDB
5.0 -0.8327 1.7344 CSV PDB
5.5 -0.8658 1.7222 CSV PDB
6.0 -0.8852 1.7099 CSV PDB
6.5 -0.8833 1.6975 CSV PDB
7.0 -0.8601 1.6852 CSV PDB
7.5 -0.823 1.6731 CSV PDB
8.0 -0.7786 1.6616 CSV PDB
8.5 -0.7295 1.6517 CSV PDB
9.0 -0.6757 1.6447 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH