Domagrozumab / 5f3h

A4DAB088_5f3h_E_F | Source PDB: 5f3h | Chains: E, F | Done
99.55
Yes
10 Å
Yes
Avg A4D Score
-0.66
Max Score
1.1092
Min Score
-3.7671
Total Score
-278.5
Score CDR
-0.229
Score non-CDR
-0.7089

Calculation Parameters

Chain Sequence(s) EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSTISSGGSYTSYPDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKQDYAMNYWGQGTLVTVSSASTKGPSVFPLAPSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPDIQMTQSPSSLSASVGDRVTITCKASQDVSTAVAWYQQKPGKAPKLLIYSASYRYTGVPSRFSGSGSGTDFTLTISSLNPEDFATYYCQQHYSTPWTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR input.pdb
Selected Chain(s) E (Heavy), F (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.7671
Maximum Score 1.1092
Average Score -0.66
Total Score -278.5017

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 E E -1.9081 Soluble
2 V E -0.9450 Soluble
3 Q E -0.9313 Soluble
4 L E 0.0000 Buried
5 L E 0.9629 Aggregation-prone
6 E E 0.0000 Buried
7 S E -0.3310 Soluble
8 G E -1.0263 Soluble
9 G E -0.4942 Soluble
11 G E 0.0368 Aggregation-prone
12 L E 0.1385 Aggregation-prone
13 V E -0.5153 Soluble
14 Q E -1.5062 Soluble
15 P E -1.6397 Soluble
16 G E -1.3662 Soluble
17 G E -1.0813 Soluble
18 S E -1.0372 Soluble
19 L E -1.0654 Soluble
20 R E -1.9721 Soluble
21 L E 0.0000 Buried
22 S E -0.4369 Soluble
23 C E 0.0000 Buried
24 A E -0.0340 Soluble
25 A E 0.0000 Buried
26 S E -0.7250 Soluble
27 G E -1.1369 Soluble
28 F E -0.3954 Soluble
29 T E -0.2258 Soluble
30 F E 0.0000 Buried
35 S E -0.9201 Soluble
36 S E -0.3165 Soluble
37 Y E -0.3419 Soluble
38 A E -0.3426 Soluble
39 M E 0.0000 Buried
40 S E 0.0000 Buried
41 W E 0.0000 Buried
42 V E 0.0000 Buried
43 R E 0.0000 Buried
44 Q E 0.0000 Buried
45 A E -0.9939 Soluble
46 P E -0.9452 Soluble
47 G E -1.4244 Soluble
48 K E -2.1667 Soluble
49 G E -1.3826 Soluble
50 L E 0.0000 Buried
51 E E -0.8884 Soluble
52 W E 0.0000 Buried
53 V E 0.0000 Buried
54 S E 0.0000 Buried
55 T E 0.0000 Buried
56 I E 0.0000 Buried
57 S E 0.1022 Aggregation-prone
58 S E -0.2951 Soluble
59 G E -0.6287 Soluble
62 G E -0.3303 Soluble
63 S E 0.1590 Aggregation-prone
64 Y E 1.0367 Aggregation-prone
65 T E 0.5245 Aggregation-prone
66 S E -0.1425 Soluble
67 Y E -0.8866 Soluble
68 P E 0.0000 Buried
69 D E -2.4741 Soluble
70 S E -1.7277 Soluble
71 V E 0.0000 Buried
72 K E -2.5328 Soluble
74 G E -1.6456 Soluble
75 R E 0.0000 Buried
76 F E 0.0000 Buried
77 T E -0.7683 Soluble
78 I E 0.0000 Buried
79 S E -0.3145 Soluble
80 R E -1.2369 Soluble
81 D E -1.9232 Soluble
82 N E -1.8122 Soluble
83 S E -1.6779 Soluble
84 K E -2.5051 Soluble
85 N E -1.9039 Soluble
86 T E 0.0000 Buried
87 L E 0.0000 Buried
88 Y E -0.6277 Soluble
89 L E 0.0000 Buried
90 Q E -1.0845 Soluble
91 M E 0.0000 Buried
92 N E -1.2693 Soluble
93 S E -1.1288 Soluble
94 L E 0.0000 Buried
95 R E -2.2879 Soluble
96 A E -1.7310 Soluble
97 E E -2.2465 Soluble
98 D E 0.0000 Buried
99 T E -0.6179 Soluble
100 A E 0.0000 Buried
101 V E 0.1456 Aggregation-prone
102 Y E 0.0000 Buried
103 Y E 0.0000 Buried
104 C E 0.0000 Buried
105 A E 0.0000 Buried
106 K E 0.0000 Buried
107 Q E 0.0000 Buried
108 D E -1.0543 Soluble
109 Y E 0.6492 Aggregation-prone
114 A E 0.0000 Buried
115 M E 0.0000 Buried
116 N E 0.0000 Buried
117 Y E -0.3483 Soluble
118 W E 0.0000 Buried
119 G E 0.0000 Buried
120 Q E -1.3818 Soluble
121 G E 0.0000 Buried
122 T E 0.0439 Aggregation-prone
123 L E 0.3519 Aggregation-prone
124 V E 0.0000 Buried
125 T E 0.0000 Buried
126 V E 0.0000 Buried
127 S E -0.9696 Soluble
128 S E -0.6901 Soluble
129 A E -0.5059 Soluble
130 S E -0.6418 Soluble
131 T E -0.6745 Soluble
132 K E -1.3630 Soluble
133 G E -1.3728 Soluble
134 P E 0.0000 Buried
135 S E -0.2514 Soluble
136 V E 0.0000 Buried
137 F E 0.0000 Buried
138 P E -1.1229 Soluble
139 L E 0.0000 Buried
140 A E -0.7980 Soluble
141 P E 0.0000 Buried
142 S E -0.3713 Soluble
143 G E -0.8142 Soluble
144 G E -0.8461 Soluble
145 T E -0.5663 Soluble
146 A E -0.3034 Soluble
147 A E 0.0000 Buried
148 L E 0.0000 Buried
149 G E 0.0000 Buried
150 C E 0.0000 Buried
151 L E 0.0000 Buried
152 V E 0.0000 Buried
153 K E 0.0000 Buried
154 D E -0.4498 Soluble
155 Y E 0.0000 Buried
156 F E 0.0000 Buried
157 P E 0.0000 Buried
158 E E -0.4924 Soluble
159 P E -0.7276 Soluble
160 V E -0.6780 Soluble
161 T E -0.5352 Soluble
162 V E -0.3002 Soluble
163 S E -0.3818 Soluble
164 W E 0.0000 Buried
165 N E -0.7586 Soluble
166 S E -0.6849 Soluble
167 G E -0.5673 Soluble
168 A E -0.2391 Soluble
169 L E 0.0160 Aggregation-prone
170 T E -0.1505 Soluble
171 S E -0.1500 Soluble
172 G E -0.1499 Soluble
173 V E 0.2065 Aggregation-prone
174 H E -0.2913 Soluble
175 T E 0.0009 Aggregation-prone
176 F E 0.0000 Buried
177 P E -0.3224 Soluble
178 A E 0.2471 Aggregation-prone
179 V E 0.5284 Aggregation-prone
180 L E 0.9927 Aggregation-prone
181 Q E 0.1047 Aggregation-prone
182 S E -0.2342 Soluble
183 S E -0.2300 Soluble
184 G E -0.0135 Soluble
185 L E 0.0531 Aggregation-prone
186 Y E 0.3249 Aggregation-prone
187 S E 0.0000 Buried
188 L E 0.0000 Buried
189 S E 0.0000 Buried
190 S E 0.0000 Buried
191 V E 0.0000 Buried
192 V E 0.0000 Buried
193 T E -0.1112 Soluble
194 V E 0.0000 Buried
195 P E -0.6155 Soluble
196 S E -0.6810 Soluble
197 S E -0.7727 Soluble
198 S E -0.7583 Soluble
199 L E -1.0205 Soluble
200 G E -1.1395 Soluble
201 T E -0.8634 Soluble
202 Q E -1.5036 Soluble
203 T E -1.2625 Soluble
204 Y E 0.0000 Buried
205 I E -1.1957 Soluble
206 C E 0.0000 Buried
207 N E -1.4445 Soluble
208 V E 0.0000 Buried
209 N E -1.8224 Soluble
210 H E 0.0000 Buried
211 K E -2.6717 Soluble
212 P E -1.5550 Soluble
213 S E -1.8412 Soluble
214 N E -2.5200 Soluble
215 T E -2.0145 Soluble
216 K E -2.6027 Soluble
217 V E -1.4164 Soluble
218 D E -2.5164 Soluble
219 K E -1.9881 Soluble
220 K E -2.5758 Soluble
221 V E 0.0000 Buried
222 E E -2.5088 Soluble
223 P E -1.1972 Soluble
1 D F -2.1807 Soluble
2 I F -1.7016 Soluble
3 Q F -2.1078 Soluble
4 M F 0.0000 Buried
5 T F -1.3643 Soluble
6 Q F -1.0023 Soluble
7 S F -0.6739 Soluble
8 P F -0.4730 Soluble
9 S F -0.6095 Soluble
10 S F -0.4832 Soluble
11 L F -0.1293 Soluble
12 S F -0.6098 Soluble
13 A F 0.0000 Buried
14 S F -0.5157 Soluble
15 V F 0.3067 Aggregation-prone
16 G F -0.7532 Soluble
17 D F -1.7045 Soluble
18 R F -2.3144 Soluble
19 V F 0.0000 Buried
20 T F -0.5581 Soluble
21 I F 0.0000 Buried
22 T F -0.8777 Soluble
23 C F 0.0000 Buried
24 K F -2.9179 Soluble
25 A F 0.0000 Buried
26 S F -2.2471 Soluble
27 Q F -2.7562 Soluble
28 D F -2.6985 Soluble
29 V F 0.0000 Buried
36 S F -0.9221 Soluble
37 T F -0.1595 Soluble
38 A F 0.0000 Buried
39 V F 0.0000 Buried
40 A F 0.0000 Buried
41 W F 0.0000 Buried
42 Y F 0.0000 Buried
43 Q F 0.0000 Buried
44 Q F 0.0000 Buried
45 K F -1.6690 Soluble
46 P F -1.5830 Soluble
47 G F -1.7007 Soluble
48 K F -2.6371 Soluble
49 A F -1.6727 Soluble
50 P F 0.0000 Buried
51 K F -1.4801 Soluble
52 L F 0.0000 Buried
53 L F 0.0000 Buried
54 I F 0.0000 Buried
55 Y F 0.6041 Aggregation-prone
56 S F 0.0000 Buried
57 A F 0.0000 Buried
65 S F 0.0932 Aggregation-prone
66 Y F 0.8271 Aggregation-prone
67 R F -0.3421 Soluble
68 Y F -0.0067 Soluble
69 T F -0.1681 Soluble
70 G F -0.5364 Soluble
71 V F -0.5580 Soluble
72 P F -0.5351 Soluble
74 S F -0.6749 Soluble
75 R F -0.8040 Soluble
76 F F 0.0000 Buried
77 S F -0.4336 Soluble
78 G F -0.2299 Soluble
79 S F -0.5315 Soluble
80 G F -1.1263 Soluble
83 S F -1.1752 Soluble
84 G F -1.8574 Soluble
85 T F -2.4361 Soluble
86 D F -2.7797 Soluble
87 F F 0.0000 Buried
88 T F -0.8479 Soluble
89 L F 0.0000 Buried
90 T F -0.6148 Soluble
91 I F 0.0000 Buried
92 S F -1.3115 Soluble
93 S F -1.1256 Soluble
94 L F 0.0000 Buried
95 N F -0.8460 Soluble
96 P F -0.8526 Soluble
97 E F -1.8879 Soluble
98 D F 0.0000 Buried
99 F F -0.3405 Soluble
100 A F 0.0000 Buried
101 T F -0.4855 Soluble
102 Y F 0.0000 Buried
103 Y F 0.0000 Buried
104 C F 0.0000 Buried
105 Q F 0.0000 Buried
106 Q F 0.0000 Buried
107 H F 0.6732 Aggregation-prone
108 Y F 1.0932 Aggregation-prone
109 S F 0.2774 Aggregation-prone
114 T F -0.2117 Soluble
115 P F -0.6189 Soluble
116 W F -0.1588 Soluble
117 T F -0.5919 Soluble
118 F F 0.0000 Buried
119 G F 0.0000 Buried
120 G F -1.0784 Soluble
121 G F 0.0000 Buried
122 T F 0.0000 Buried
123 K F -0.7309 Soluble
124 V F 0.0000 Buried
125 E F 0.0000 Buried
126 I F -0.3959 Soluble
127 K F -1.3292 Soluble
128 R F -1.0623 Soluble
129 T F 0.1213 Aggregation-prone
130 V F 1.1092 Aggregation-prone
131 A F 0.4344 Aggregation-prone
132 A F 0.0356 Aggregation-prone
133 P F 0.0000 Buried
134 S F 0.0577 Aggregation-prone
135 V F 0.1730 Aggregation-prone
136 F F 0.2828 Aggregation-prone
137 I F 0.1644 Aggregation-prone
138 F F 0.0000 Buried
139 P F -0.7250 Soluble
140 P F 0.0000 Buried
141 S F -1.6654 Soluble
142 D F -2.9748 Soluble
143 E F -3.0329 Soluble
144 Q F 0.0000 Buried
145 L F -2.3126 Soluble
146 K F -2.8546 Soluble
147 S F -1.7196 Soluble
148 G F -1.3042 Soluble
149 T F -1.0806 Soluble
150 A F 0.0000 Buried
151 S F 0.0000 Buried
152 V F 0.0000 Buried
153 V F 0.0000 Buried
154 C F 0.0000 Buried
155 L F 0.0000 Buried
156 L F 0.0000 Buried
157 N F 0.0000 Buried
158 N F -0.6530 Soluble
159 F F 0.0000 Buried
160 Y F 0.0000 Buried
161 P F -1.5472 Soluble
162 R F -2.8542 Soluble
163 E F -3.0975 Soluble
164 A F -2.2891 Soluble
165 K F -2.3414 Soluble
166 V F -1.0872 Soluble
167 Q F -0.7833 Soluble
168 W F 0.0000 Buried
169 K F -0.9774 Soluble
170 V F 0.0000 Buried
171 D F -2.3958 Soluble
172 N F -1.6331 Soluble
173 A F -0.5302 Soluble
174 L F 0.3974 Aggregation-prone
175 Q F -0.2320 Soluble
176 S F -0.4345 Soluble
177 G F -0.8913 Soluble
178 N F -0.8052 Soluble
179 S F -1.0711 Soluble
180 Q F -1.3298 Soluble
181 E F -1.1806 Soluble
182 S F 0.0000 Buried
183 V F -0.7017 Soluble
184 T F -1.2077 Soluble
185 E F -2.2751 Soluble
186 Q F -1.8289 Soluble
187 D F -1.9143 Soluble
188 S F -1.7031 Soluble
189 K F -2.3110 Soluble
190 D F -1.8290 Soluble
191 S F -1.7200 Soluble
192 T F 0.0000 Buried
193 Y F 0.0000 Buried
194 S F 0.0000 Buried
195 L F 0.0000 Buried
196 S F 0.0000 Buried
197 S F 0.0000 Buried
198 T F -0.5466 Soluble
199 L F 0.0000 Buried
200 T F -0.5177 Soluble
201 L F -0.7193 Soluble
202 S F -1.3770 Soluble
203 K F -2.3742 Soluble
204 A F -2.0243 Soluble
205 D F -2.6640 Soluble
206 Y F 0.0000 Buried
207 E F -3.6447 Soluble
208 K F -3.7671 Soluble
209 H F -3.1677 Soluble
210 K F -3.3345 Soluble
211 V F -1.7836 Soluble
212 Y F 0.0000 Buried
213 A F -1.0430 Soluble
214 C F 0.0000 Buried
215 E F -0.9972 Soluble
216 V F 0.0000 Buried
217 T F -1.2432 Soluble
218 H F 0.0000 Buried
219 Q F -1.4154 Soluble
220 G F -0.2750 Soluble
221 L F -0.2034 Soluble
222 S F -0.4794 Soluble
223 S F -0.4225 Soluble
224 P F -0.5259 Soluble
225 V F 0.0166 Aggregation-prone
226 T F -0.5200 Soluble
227 K F -0.7206 Soluble
228 S F -0.7886 Soluble
229 F F -1.0393 Soluble
230 N F -2.4043 Soluble
231 R F -2.9878 Soluble

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
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pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.6769 1.8064 CSV PDB
4.5 -0.7225 1.7602 CSV PDB
5.0 -0.7735 1.6916 CSV PDB
5.5 -0.821 1.6122 CSV PDB
6.0 -0.8545 1.5349 CSV PDB
6.5 -0.8658 1.4714 CSV PDB
7.0 -0.8552 1.4706 CSV PDB
7.5 -0.8303 1.5541 CSV PDB
8.0 -0.7972 1.6477 CSV PDB
8.5 -0.7568 1.7443 CSV PDB
9.0 -0.7084 1.8394 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH