Andecaliximab / 5th9

A4DAB017_5th9_J_N | Source PDB: 5th9 | Chains: J, N | Done
100
Yes
10 Å
Yes
Avg A4D Score
-0.6293
Max Score
2.0743
Min Score
-3.3167
Total Score
-133.41
Score CDR
-0.0694
Score non-CDR
-0.7676

Calculation Parameters

Chain Sequence(s) QVQLQESGPGLVKPSETLSLTCTVSGFSLLSYGVHWVRQPPGKGLEWLGVIWTGGTTNYNSALMSRFTISKDDSKNTVYLKMNSLKTEDTAIYYCARYYYGMDYWGDIQMTQSPSSLSASVGDRVTITCKASQDVRNTVAWYQQKPGKAPKLLIYSSSYRNTGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQHYITPYTFGGGTKVEI input.pdb
Selected Chain(s) J (Heavy), N (Light)
Distance of Aggregation 10 Å
FoldX Energy Minimization Yes
pH Calculations Yes
Downloads Download all data (.tar.gz)

Aggrescan4D Profile

Aggregation-prone (score > 0)
Soluble (score < 0)
Buried (score = 0)

Per-Residue A4D Scores

Download CSV
Minimum Score -3.3167
Maximum Score 2.0743
Average Score -0.6293
Total Score -133.41

Residues with A4D score > 0.0 are highlighted as aggregation-prone.

Index Residue Chain A4D Score Classification
1 Q J -1.4693 Soluble
2 V J -0.8574 Soluble
3 Q J -1.4382 Soluble
4 L J 0.0000 Buried
5 Q J -1.5021 Soluble
6 E J -1.1369 Soluble
7 S J -0.8978 Soluble
8 G J -0.5614 Soluble
9 P J 0.0829 Aggregation-prone
11 G J 0.2065 Aggregation-prone
12 L J 1.0929 Aggregation-prone
13 V J -0.4329 Soluble
14 K J -2.1718 Soluble
15 P J -2.4609 Soluble
16 S J -2.3214 Soluble
17 E J -3.0463 Soluble
18 T J -1.7804 Soluble
19 L J 0.0000 Buried
20 S J -0.7263 Soluble
21 L J -0.6904 Soluble
22 T J -0.6034 Soluble
23 C J 0.0000 Buried
24 T J -1.0224 Soluble
25 V J 0.0000 Buried
26 S J -1.2177 Soluble
27 G J -1.0766 Soluble
28 F J -0.2303 Soluble
29 S J -0.1966 Soluble
30 L J 0.0000 Buried
35 L J 0.8826 Aggregation-prone
36 S J 0.8388 Aggregation-prone
37 Y J 1.0074 Aggregation-prone
38 G J 0.0000 Buried
39 V J 0.0000 Buried
40 H J 0.0000 Buried
41 W J 0.0000 Buried
42 V J 0.0000 Buried
43 R J 0.0000 Buried
44 Q J -0.6892 Soluble
45 P J -1.0367 Soluble
46 P J -0.9013 Soluble
47 G J -1.4830 Soluble
48 K J -2.3161 Soluble
49 G J -1.4814 Soluble
50 L J 0.0000 Buried
51 E J -1.4030 Soluble
52 W J 0.0000 Buried
53 L J 0.0000 Buried
54 G J 0.0000 Buried
55 V J 0.0000 Buried
56 I J 0.0000 Buried
57 W J 0.1815 Aggregation-prone
58 T J 0.1741 Aggregation-prone
59 G J -0.2614 Soluble
63 G J -0.7427 Soluble
64 T J -0.4728 Soluble
65 T J -0.3591 Soluble
66 N J -0.3618 Soluble
67 Y J 0.0734 Aggregation-prone
68 N J -0.3246 Soluble
69 S J -0.2065 Soluble
70 A J -0.1378 Soluble
71 L J 0.0000 Buried
72 M J 0.7423 Aggregation-prone
74 S J 0.0843 Aggregation-prone
75 R J 0.0000 Buried
76 F J 0.0000 Buried
77 T J -0.6262 Soluble
78 I J 0.0000 Buried
79 S J -0.8484 Soluble
80 K J -1.7366 Soluble
81 D J -3.0173 Soluble
82 D J -2.8907 Soluble
83 S J -2.2123 Soluble
84 K J -2.6014 Soluble
85 N J -2.2086 Soluble
86 T J 0.0000 Buried
87 V J 0.0000 Buried
88 Y J -0.4847 Soluble
89 L J 0.0000 Buried
90 K J -2.0811 Soluble
91 M J -1.8569 Soluble
92 N J -2.2023 Soluble
93 S J -1.6664 Soluble
94 L J 0.0000 Buried
95 K J -3.1746 Soluble
96 T J -2.2630 Soluble
97 E J -2.4888 Soluble
98 D J -1.7253 Soluble
99 T J -1.0920 Soluble
100 A J -0.1805 Soluble
101 I J 1.0070 Aggregation-prone
102 Y J 0.3625 Aggregation-prone
103 Y J 0.0000 Buried
104 C J 0.0000 Buried
105 A J 0.0000 Buried
106 R J 0.0000 Buried
107 Y J 1.2317 Aggregation-prone
108 Y J 2.0310 Aggregation-prone
114 Y J 2.0743 Aggregation-prone
115 G J 0.0000 Buried
116 M J 0.0000 Buried
117 D J 0.2955 Aggregation-prone
118 Y J 0.3034 Aggregation-prone
119 W J -0.5998 Soluble
120 G J -1.1225 Soluble
1 D N -2.0884 Soluble
2 I N 0.0000 Buried
3 Q N -2.1006 Soluble
4 M N 0.0000 Buried
5 T N -1.0003 Soluble
6 Q N 0.0000 Buried
7 S N -0.7087 Soluble
8 P N -0.5912 Soluble
9 S N -0.7501 Soluble
10 S N -1.1097 Soluble
11 L N -0.6328 Soluble
12 S N -0.3169 Soluble
13 A N -0.1815 Soluble
14 S N 0.2706 Aggregation-prone
15 V N 0.7795 Aggregation-prone
16 G N -0.8160 Soluble
17 D N -1.5045 Soluble
18 R N -2.3670 Soluble
19 V N 0.0000 Buried
20 T N -0.6429 Soluble
21 I N 0.0000 Buried
22 T N -0.8124 Soluble
23 C N 0.0000 Buried
24 K N -2.6919 Soluble
25 A N -2.4483 Soluble
26 S N -2.3497 Soluble
27 Q N -2.9390 Soluble
28 D N -3.3167 Soluble
29 V N 0.0000 Buried
36 R N -2.8918 Soluble
37 N N -2.0131 Soluble
38 T N -0.3508 Soluble
39 V N 0.0000 Buried
40 A N 0.0000 Buried
41 W N 0.0000 Buried
42 Y N 0.0000 Buried
43 Q N -0.7541 Soluble
44 Q N 0.0000 Buried
45 K N -1.9694 Soluble
46 P N -1.4688 Soluble
47 G N -1.6831 Soluble
48 K N -2.7054 Soluble
49 A N -1.4644 Soluble
50 P N 0.0000 Buried
51 K N -1.6699 Soluble
52 L N 0.0000 Buried
53 L N 0.0000 Buried
54 I N 0.0000 Buried
55 Y N 0.8368 Aggregation-prone
56 S N 0.0973 Aggregation-prone
57 S N 0.0000 Buried
65 S N 0.0041 Aggregation-prone
66 Y N 0.8125 Aggregation-prone
67 R N -0.7526 Soluble
68 N N -0.5907 Soluble
69 T N -0.7522 Soluble
70 G N -0.8707 Soluble
71 V N -0.9145 Soluble
72 P N -1.3322 Soluble
74 D N -2.2067 Soluble
75 R N -1.6461 Soluble
76 F N 0.0000 Buried
77 S N -0.6233 Soluble
78 G N 0.0000 Buried
79 S N -0.5982 Soluble
80 G N -1.4483 Soluble
83 S N -2.1265 Soluble
84 G N -2.6026 Soluble
85 T N -2.7585 Soluble
86 D N -2.7971 Soluble
87 F N 0.0000 Buried
88 T N -0.7823 Soluble
89 L N 0.0000 Buried
90 T N -0.6063 Soluble
91 I N 0.0000 Buried
92 S N -1.5292 Soluble
93 S N -1.3162 Soluble
94 L N 0.0000 Buried
95 Q N -0.6252 Soluble
96 A N -0.2129 Soluble
97 E N -1.0382 Soluble
98 D N 0.0000 Buried
99 V N 0.5231 Aggregation-prone
100 A N 0.0000 Buried
101 V N -0.4485 Soluble
102 Y N 0.0000 Buried
103 Y N 0.0000 Buried
104 C N 0.0000 Buried
105 Q N 0.0000 Buried
106 Q N 0.0000 Buried
107 H N 0.0000 Buried
108 Y N 1.0952 Aggregation-prone
109 I N 1.4771 Aggregation-prone
114 T N 0.4058 Aggregation-prone
115 P N -0.1644 Soluble
116 Y N 0.0000 Buried
117 T N 0.0000 Buried
118 F N 0.0000 Buried
119 G N 0.0000 Buried
120 G N -1.2142 Soluble
121 G N 0.0000 Buried
122 T N 0.0000 Buried
123 K N -1.5939 Soluble
124 V N 0.0000 Buried
125 E N -0.7160 Soluble
126 I N 1.3201 Aggregation-prone

3D Structure — colored by A4D score

Sequence - click residue to focus in viewer  |  colored by A4D score
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Color Legend (B-factor = A4D Score)
Score > 1.5 — highly aggregation-prone
Score 0.5–1.5 — aggregation-prone
Score ≈ 0 — buried
Score −1 to −0.5 — soluble
Score < −2.5 — highly soluble
pH Structure
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A4D Score Threshold
Highlight residues > threshold in the sequence panel
CDR Regions
HCDR1
HCDR2
HCDR3
LCDR1
LCDR2
LCDR3
Display Options

pH-Dependent Aggregation Profiles

A4D scores calculated across 11 pH conditions (4.0–9.0, step 0.5). Click a row to view the structure at that pH. The input structure is globular — max score is recommended for pH analysis.

pH Avg A4D Score Max A4D Score Downloads
4.0 -0.5586 2.4495 CSV PDB
4.5 -0.6123 2.3938 CSV PDB
5.0 -0.6745 2.3308 CSV PDB
5.5 -0.7332 2.2651 CSV PDB
6.0 -0.7765 2.2543 CSV PDB
6.5 -0.7968 2.2458 CSV PDB
7.0 -0.7953 2.2374 CSV PDB
7.5 -0.7799 2.2292 CSV PDB
8.0 -0.7571 2.2215 CSV PDB
8.5 -0.7279 2.2151 CSV PDB
9.0 -0.6906 2.2108 CSV PDB
Average A4D Score vs pH
Max A4D Score vs pH